RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 SPACA7Q96KW9 195 aa4.25□□□□□ -1.73
VPS35-209ENST00000568642 TINF2Q9BSI4 451 aa4.25□□□□□ -1.73
VPS35-209ENST00000568642 HMX1Q9NP08 348 aaPredicted RBP4.25□□□□□ -1.73
VPS35-209ENST00000568642 KLHL42Q9P2K6 505 aa4.25□□□□□ -1.73
VPS35-209ENST00000568642 TNIKQ9UKE5 1360 aa4.25□□□□□ -1.73
VPS35-209ENST00000568642 FAM135BQ49AJ0 1406 aa4.24□□□□□ -1.73
VPS35-209ENST00000568642 TPD52L2O43399 206 aaKnown RBP4.24□□□□□ -1.73
VPS35-209ENST00000568642 DXOO77932 396 aaKnown RBP4.24□□□□□ -1.73
VPS35-209ENST00000568642 MAP4K4O95819 1239 aaPredicted RBP4.24□□□□□ -1.73
VPS35-209ENST00000568642 SLURP2P0DP57 97 aa4.24□□□□□ -1.73
VPS35-209ENST00000568642 TIMP2P16035 220 aa4.24□□□□□ -1.73
VPS35-209ENST00000568642 RBM6P78332 1123 aaKnown RBP4.24□□□□□ -1.73
VPS35-209ENST00000568642 VAC14Q08AM6 782 aa4.24□□□□□ -1.73
VPS35-209ENST00000568642 NOP9Q86U38 636 aaKnown RBP4.24□□□□□ -1.73
VPS35-209ENST00000568642 EXOC8Q8IYI6 725 aa4.24□□□□□ -1.73
VPS35-209ENST00000568642 PXYLP1Q8TE99 480 aa4.24□□□□□ -1.73
VPS35-209ENST00000568642 ZNF526Q8TF50 670 aaPredicted RBP4.24□□□□□ -1.73
VPS35-209ENST00000568642 SPIRE2Q8WWL2 714 aa4.24□□□□□ -1.73
VPS35-209ENST00000568642 SGSM3Q96HU1 749 aa4.24□□□□□ -1.73
VPS35-209ENST00000568642 KRTAP4-7Q9BYR0 210 aa4.24□□□□□ -1.73
VPS35-209ENST00000568642 TLL2Q9Y6L7 1015 aa4.24□□□□□ -1.73
VPS35-209ENST00000568642 ZMYM4Q5VZL5 1548 aa4.24□□□□□ -1.73
VPS35-209ENST00000568642 CEP170BQ9Y4F5 1589 aaPredicted RBP4.23□□□□□ -1.73
VPS35-209ENST00000568642 ADGBQ8N7X0 1667 aa4.23□□□□□ -1.73
VPS35-209ENST00000568642 USP17L8P0C7I0 530 aa4.23□□□□□ -1.73
VPS35-209ENST00000568642 HSPA6P17066 643 aa4.23□□□□□ -1.73
VPS35-209ENST00000568642 TCEAL1Q15170 157 aa4.23□□□□□ -1.73
VPS35-209ENST00000568642 SF3A1Q15459 793 aaKnown RBP4.23□□□□□ -1.73
VPS35-209ENST00000568642 RIC3Q7Z5B4 369 aa4.23□□□□□ -1.73
VPS35-209ENST00000568642 METTL3Q86U44 580 aaKnown RBP4.23□□□□□ -1.73
VPS35-209ENST00000568642 RDH13Q8NBN7 331 aa4.23□□□□□ -1.73
VPS35-209ENST00000568642 CCER1Q8TC90 406 aaPredicted RBP4.23□□□□□ -1.73
VPS35-209ENST00000568642 BACH2Q9BYV9 841 aa4.23□□□□□ -1.73
VPS35-209ENST00000568642 PPP1R1BQ9UD71 204 aaPredicted RBP4.23□□□□□ -1.73
VPS35-209ENST00000568642 WWC3Q9ULE0 1092 aa4.23□□□□□ -1.73
VPS35-209ENST00000568642 WDR3Q9UNX4 943 aaKnown RBP eCLIP4.23□□□□□ -1.73
VPS35-209ENST00000568642 PCDHB15Q9Y5E8 787 aa4.23□□□□□ -1.73
VPS35-209ENST00000568642 ABCA9Q8IUA7 1624 aa4.23□□□□□ -1.73
VPS35-209ENST00000568642 NEURL4Q96JN8 1562 aa4.23□□□□□ -1.73
VPS35-209ENST00000568642 SHPRHQ149N8 1683 aa4.22□□□□□ -1.73
VPS35-209ENST00000568642 SPATA31A6Q5VVP1 1343 aa4.22□□□□□ -1.73
VPS35-209ENST00000568642 ERICH3Q5RHP9 1530 aa4.22□□□□□ -1.73
VPS35-209ENST00000568642 KIAA1210Q9ULL0 1709 aa4.22□□□□□ -1.73
VPS35-209ENST00000568642 FURINP09958 794 aa4.22□□□□□ -1.73
VPS35-209ENST00000568642 NNTQ13423 1086 aa4.22□□□□□ -1.73
VPS35-209ENST00000568642 C6orf118Q5T5N4 469 aa4.22□□□□□ -1.73
VPS35-209ENST00000568642 C9orf131Q5VYM1 1079 aa4.22□□□□□ -1.73
VPS35-209ENST00000568642 RSBN1LQ6PCB5 846 aaPredicted RBP4.22□□□□□ -1.73
VPS35-209ENST00000568642 TEX2Q8IWB9 1127 aa4.22□□□□□ -1.73
VPS35-209ENST00000568642 CUEDC1Q9NWM3 386 aaPredicted RBP4.22□□□□□ -1.73
VPS35-209ENST00000568642 AFF2P51816 1311 aa4.21□□□□□ -1.73
VPS35-209ENST00000568642 BLMP54132 1417 aaPredicted RBP4.21□□□□□ -1.73
VPS35-209ENST00000568642 CARMIL2Q6F5E8 1435 aa4.21□□□□□ -1.73
VPS35-209ENST00000568642 ARID4AP29374 1257 aaPredicted RBP4.21□□□□□ -1.74
VPS35-209ENST00000568642 BAG6P46379 1132 aa4.21□□□□□ -1.74
VPS35-209ENST00000568642 WDR4P57081 412 aaKnown RBP4.21□□□□□ -1.74
VPS35-209ENST00000568642 MCCD1P59942 119 aaPredicted RBP4.21□□□□□ -1.74
VPS35-209ENST00000568642 CCDC144BQ3MJ40 725 aa4.21□□□□□ -1.74
VPS35-209ENST00000568642 SDE2Q6IQ49 451 aa4.21□□□□□ -1.74
VPS35-209ENST00000568642 LYPD4Q6UWN0 246 aa4.21□□□□□ -1.74
VPS35-209ENST00000568642 DEFB132Q7Z7B7 95 aa4.21□□□□□ -1.74
VPS35-209ENST00000568642 RPUSD2Q8IZ73 545 aaKnown RBP4.21□□□□□ -1.74
VPS35-209ENST00000568642 MPNDQ8N594 471 aa4.21□□□□□ -1.74
VPS35-209ENST00000568642 STAG1Q8WVM7 1258 aa4.21□□□□□ -1.74
VPS35-209ENST00000568642 DHX38Q92620 1227 aaKnown RBP4.21□□□□□ -1.74
VPS35-209ENST00000568642 KCNB2Q92953 911 aa4.21□□□□□ -1.74
VPS35-209ENST00000568642 DNAJC2Q99543 621 aaKnown RBP4.21□□□□□ -1.74
VPS35-209ENST00000568642 KLF16Q9BXK1 252 aaPredicted RBP4.21□□□□□ -1.74
VPS35-209ENST00000568642 DNMT3LQ9UJW3 386 aa4.21□□□□□ -1.74
VPS35-209ENST00000568642 DENND4BO75064 1496 aaPredicted RBP4.21□□□□□ -1.74
VPS35-209ENST00000568642 CNTNAP5Q8WYK1 1306 aa4.21□□□□□ -1.74
VPS35-209ENST00000568642 MAGI2Q86UL8 1455 aa4.2□□□□□ -1.74
VPS35-209ENST00000568642 NINLQ9Y2I6 1382 aa4.2□□□□□ -1.74
VPS35-209ENST00000568642 GCGRP47871 477 aa4.2□□□□□ -1.74
VPS35-209ENST00000568642 RBL2Q08999 1139 aa4.2□□□□□ -1.74
VPS35-209ENST00000568642 WASHC4Q2M389 1173 aa4.2□□□□□ -1.74
VPS35-209ENST00000568642 PTCRAQ6ISU1 281 aaPredicted RBP4.2□□□□□ -1.74
VPS35-209ENST00000568642 JAZF1Q86VZ6 243 aa4.2□□□□□ -1.74
VPS35-209ENST00000568642 NME8Q8N427 588 aa4.2□□□□□ -1.74
VPS35-209ENST00000568642 EPS8L1Q8TE68 723 aa4.2□□□□□ -1.74
VPS35-209ENST00000568642 NGLY1Q96IV0 654 aa4.2□□□□□ -1.74
VPS35-209ENST00000568642 GMLQ99445 158 aa4.2□□□□□ -1.74
VPS35-209ENST00000568642 NDUFB9Q9Y6M9 179 aa4.2□□□□□ -1.74
VPS35-209ENST00000568642 COL16A1Q07092 1604 aaPredicted RBP4.2□□□□□ -1.74
VPS35-209ENST00000568642 FHOD3Q2V2M9 1422 aa4.2□□□□□ -1.74
VPS35-209ENST00000568642 C9orf84Q5VXU9 1444 aa4.2□□□□□ -1.74
VPS35-209ENST00000568642 MROH2AA6NES4 1674 aa4.19□□□□□ -1.74
VPS35-209ENST00000568642 MOXD2PA6NHM9 499 aa4.19□□□□□ -1.74
VPS35-209ENST00000568642 DDX11L8A8MPP1 907 aa4.19□□□□□ -1.74
VPS35-209ENST00000568642 AP1G2O75843 785 aa4.19□□□□□ -1.74
VPS35-209ENST00000568642 ADH1CP00326 375 aa4.19□□□□□ -1.74
VPS35-209ENST00000568642 ERCC5P28715 1186 aaPredicted RBP4.19□□□□□ -1.74
VPS35-209ENST00000568642 SH3BP2P78314 561 aa4.19□□□□□ -1.74
VPS35-209ENST00000568642 SF3B2Q13435 895 aaKnown RBP4.19□□□□□ -1.74
VPS35-209ENST00000568642 WWC1Q8IX03 1113 aa4.19□□□□□ -1.74
VPS35-209ENST00000568642 SLC43A3Q8NBI5 491 aa4.19□□□□□ -1.74
VPS35-209ENST00000568642 CABLES1Q8TDN4 633 aa4.19□□□□□ -1.74
VPS35-209ENST00000568642 NANOS1Q8WY41 292 aaKnown RBP4.19□□□□□ -1.74
VPS35-209ENST00000568642 CLP1Q92989 425 aaKnown RBP4.19□□□□□ -1.74
VPS35-209ENST00000568642 HLA-CQ95604 372 aa4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms