RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 CEP350Q5VT06 3117 aa10.82□□□□□ -0.68
SF3B3-212ENST00000568539 COL5A3P25940 1745 aaPredicted RBP10.81□□□□□ -0.68
SF3B3-212ENST00000568539 RGL2O15211 777 aa10.81□□□□□ -0.68
SF3B3-212ENST00000568539 GNPATO15228 680 aa10.81□□□□□ -0.68
SF3B3-212ENST00000568539 RPS6KA4O75676 772 aa10.81□□□□□ -0.68
SF3B3-212ENST00000568539 ZNF827Q17R98 1081 aa10.81□□□□□ -0.68
SF3B3-212ENST00000568539 AMIGO3Q86WK7 504 aa10.81□□□□□ -0.68
SF3B3-212ENST00000568539 SPDYE1Q8NFV5 336 aaPredicted RBP10.81□□□□□ -0.68
SF3B3-212ENST00000568539 AK7Q96M32 723 aa10.81□□□□□ -0.68
SF3B3-212ENST00000568539 KIF16BQ96L93 1317 aa10.81□□□□□ -0.68
SF3B3-212ENST00000568539 C4BP0C0L5 1744 aa10.81□□□□□ -0.68
SF3B3-212ENST00000568539 FLIIQ13045 1269 aa10.8□□□□□ -0.68
SF3B3-212ENST00000568539 IFFO2Q5TF58 517 aa10.8□□□□□ -0.68
SF3B3-212ENST00000568539 COPS6Q7L5N1 327 aa10.8□□□□□ -0.68
SF3B3-212ENST00000568539 XAGE3Q8WTP9 111 aa10.8□□□□□ -0.68
SF3B3-212ENST00000568539 ANO8Q9HCE9 1232 aaPredicted RBP10.8□□□□□ -0.68
SF3B3-212ENST00000568539 RTCBQ9Y3I0 505 aaKnown RBP10.8□□□□□ -0.68
SF3B3-212ENST00000568539 COL15A1P39059 1388 aa10.79□□□□□ -0.68
SF3B3-212ENST00000568539 AIMP1Q12904 312 aaKnown RBP10.79□□□□□ -0.68
SF3B3-212ENST00000568539 TTLL7Q6ZT98 887 aa10.79□□□□□ -0.68
SF3B3-212ENST00000568539 SMIM5Q71RC9 77 aa10.79□□□□□ -0.68
SF3B3-212ENST00000568539 NOB1Q9ULX3 412 aaKnown RBP10.79□□□□□ -0.68
SF3B3-212ENST00000568539 ZNF330Q9Y3S2 320 aaPredicted RBP10.79□□□□□ -0.68
SF3B3-212ENST00000568539 PTPRCP08575 1304 aa10.79□□□□□ -0.68
SF3B3-212ENST00000568539 RNF123Q5XPI4 1314 aa10.79□□□□□ -0.68
SF3B3-212ENST00000568539 SSFA2P28290 1259 aa10.78□□□□□ -0.68
SF3B3-212ENST00000568539 FKBP5Q13451 457 aaPredicted RBP10.78□□□□□ -0.68
SF3B3-212ENST00000568539 SLC15A2Q16348 729 aa10.78□□□□□ -0.68
SF3B3-212ENST00000568539 ARHGAP45Q92619 1136 aa10.78□□□□□ -0.68
SF3B3-212ENST00000568539 FRAT1Q92837 279 aaPredicted RBP10.78□□□□□ -0.68
SF3B3-212ENST00000568539 TFCP2L1Q9NZI6 479 aa10.78□□□□□ -0.68
SF3B3-212ENST00000568539 ADCY9O60503 1353 aa10.77□□□□□ -0.68
SF3B3-212ENST00000568539 A0A087WZG4 1122 aa10.77□□□□□ -0.69
SF3B3-212ENST00000568539 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.77□□□□□ -0.69
SF3B3-212ENST00000568539 IPO8O15397 1037 aaKnown RBP10.77□□□□□ -0.69
SF3B3-212ENST00000568539 PHF14O94880 888 aa10.77□□□□□ -0.69
SF3B3-212ENST00000568539 DDX58O95786 925 aaKnown RBP10.77□□□□□ -0.69
SF3B3-212ENST00000568539 TRIM27P14373 513 aa10.77□□□□□ -0.69
SF3B3-212ENST00000568539 RRP1P56182 461 aaKnown RBP10.77□□□□□ -0.69
SF3B3-212ENST00000568539 TRAPPC3LQ5T215 181 aa10.77□□□□□ -0.69
SF3B3-212ENST00000568539 ZKSCAN2Q63HK3 967 aa10.77□□□□□ -0.69
SF3B3-212ENST00000568539 ATF7IPQ6VMQ6 1270 aa10.77□□□□□ -0.69
SF3B3-212ENST00000568539 ANKRD13DQ6ZTN6 518 aa10.77□□□□□ -0.69
SF3B3-212ENST00000568539 NPM2Q86SE8 214 aaKnown RBP10.77□□□□□ -0.69
SF3B3-212ENST00000568539 DZIP3Q86Y13 1208 aaKnown RBP10.77□□□□□ -0.69
SF3B3-212ENST00000568539 PLBD2Q8NHP8 589 aa10.77□□□□□ -0.69
SF3B3-212ENST00000568539 ARHGEF1Q92888 912 aaKnown RBP10.77□□□□□ -0.69
SF3B3-212ENST00000568539 STK32BQ9NY57 414 aa10.77□□□□□ -0.69
SF3B3-212ENST00000568539 TBC1D2BQ9UPU7 963 aa10.77□□□□□ -0.69
SF3B3-212ENST00000568539 SUPT16HQ9Y5B9 1047 aaKnown RBP10.77□□□□□ -0.69
SF3B3-212ENST00000568539 NUP188Q5SRE5 1749 aa10.77□□□□□ -0.69
SF3B3-212ENST00000568539 PI4KAP2A4QPH2 592 aa10.76□□□□□ -0.69
SF3B3-212ENST00000568539 ERVV-1B6SEH8 477 aa10.76□□□□□ -0.69
SF3B3-212ENST00000568539 PLIN1O60240 522 aa10.76□□□□□ -0.69
SF3B3-212ENST00000568539 CAMTA2O94983 1202 aa10.76□□□□□ -0.69
SF3B3-212ENST00000568539 KSR2Q6VAB6 950 aa10.76□□□□□ -0.69
SF3B3-212ENST00000568539 KIF6Q6ZMV9 814 aa10.76□□□□□ -0.69
SF3B3-212ENST00000568539 PI4KAP1Q8N8J0 262 aa10.76□□□□□ -0.69
SF3B3-212ENST00000568539 API5Q9BZZ5 524 aaKnown RBP10.76□□□□□ -0.69
SF3B3-212ENST00000568539 ZBTB3Q9H5J0 574 aa10.76□□□□□ -0.69
SF3B3-212ENST00000568539 TNNQ9UQP3 1299 aa10.76□□□□□ -0.69
SF3B3-212ENST00000568539 TAF1LQ8IZX4 1826 aa10.76□□□□□ -0.69
SF3B3-212ENST00000568539 MAP3K15Q6ZN16 1313 aa10.76□□□□□ -0.69
SF3B3-212ENST00000568539 PNPLA7Q6ZV29 1317 aa10.76□□□□□ -0.69
SF3B3-212ENST00000568539 F6X3S4 739 aa10.75□□□□□ -0.69
SF3B3-212ENST00000568539 RFC4P35249 363 aa10.75□□□□□ -0.69
SF3B3-212ENST00000568539 RIC3Q7Z5B4 369 aa10.75□□□□□ -0.69
SF3B3-212ENST00000568539 COL23A1Q86Y22 540 aaPredicted RBP10.75□□□□□ -0.69
SF3B3-212ENST00000568539 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.75□□□□□ -0.69
SF3B3-212ENST00000568539 FLAD1Q8NFF5 587 aa10.75□□□□□ -0.69
SF3B3-212ENST00000568539 BBXQ8WY36 941 aaPredicted RBP10.75□□□□□ -0.69
SF3B3-212ENST00000568539 ARXQ96QS3 562 aa10.75□□□□□ -0.69
SF3B3-212ENST00000568539 NARFQ9UHQ1 456 aa10.75□□□□□ -0.69
SF3B3-212ENST00000568539 MAP3K2Q9Y2U5 619 aa10.75□□□□□ -0.69
SF3B3-212ENST00000568539 ABCC4O15439 1325 aa10.75□□□□□ -0.69
SF3B3-212ENST00000568539 USP42Q9H9J4 1324 aaKnown RBP10.75□□□□□ -0.69
SF3B3-212ENST00000568539 NUBP1P53384 320 aa10.74□□□□□ -0.69
SF3B3-212ENST00000568539 HLFQ16534 295 aa10.74□□□□□ -0.69
SF3B3-212ENST00000568539 USPL1Q5W0Q7 1092 aa10.74□□□□□ -0.69
SF3B3-212ENST00000568539 GIGYF2Q6Y7W6 1299 aaKnown RBP10.74□□□□□ -0.69
SF3B3-212ENST00000568539 REM2Q8IYK8 340 aaPredicted RBP10.74□□□□□ -0.69
SF3B3-212ENST00000568539 DNAAF4Q8WXU2 420 aa10.74□□□□□ -0.69
SF3B3-212ENST00000568539 CLUAP1Q96AJ1 413 aa10.74□□□□□ -0.69
SF3B3-212ENST00000568539 BCL2L12Q9HB09 334 aa10.74□□□□□ -0.69
SF3B3-212ENST00000568539 SRP68Q9UHB9 627 aaKnown RBP10.74□□□□□ -0.69
SF3B3-212ENST00000568539 ZPR1O75312 459 aa10.73□□□□□ -0.69
SF3B3-212ENST00000568539 RLBP1P12271 317 aa10.73□□□□□ -0.69
SF3B3-212ENST00000568539 PDE3AQ14432 1141 aa10.73□□□□□ -0.69
SF3B3-212ENST00000568539 C20orf194Q5TEA3 1177 aa10.73□□□□□ -0.69
SF3B3-212ENST00000568539 CLEC4GQ6UXB4 293 aa10.73□□□□□ -0.69
SF3B3-212ENST00000568539 DZIP1LQ8IYY4 767 aaKnown RBP10.73□□□□□ -0.69
SF3B3-212ENST00000568539 METTL22Q9BUU2 404 aaPredicted RBP10.73□□□□□ -0.69
SF3B3-212ENST00000568539 ATP10DQ9P241 1426 aa10.73□□□□□ -0.69
SF3B3-212ENST00000568539 PXDNLA1KZ92 1463 aa10.73□□□□□ -0.69
SF3B3-212ENST00000568539 MYH14Q7Z406 1995 aaKnown RBP10.72□□□□□ -0.69
SF3B3-212ENST00000568539 KAT6BQ8WYB5 2073 aa10.72□□□□□ -0.69
SF3B3-212ENST00000568539 MS4A1P11836 297 aa10.72□□□□□ -0.69
SF3B3-212ENST00000568539 GYS1P13807 737 aa10.72□□□□□ -0.69
SF3B3-212ENST00000568539 MNX1P50219 401 aaPredicted RBP10.72□□□□□ -0.69
SF3B3-212ENST00000568539 TCIRG1Q13488 830 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms