RNA–Protein interactions for RNA: ENST00000568472.6

CLN3-234, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 1,011 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-234ENST00000568472 ZBED9Q6R2W3 1325 aa28.26■■■□□ 2.11
CLN3-234ENST00000568472 MAP3K15Q6ZN16 1313 aa28.26■■■□□ 2.11
CLN3-234ENST00000568472 TM4SF1P30408 202 aa28.26■■■□□ 2.11
CLN3-234ENST00000568472 CDCA7LQ96GN5 454 aa28.26■■■□□ 2.11
CLN3-234ENST00000568472 PARP3Q9Y6F1 533 aa28.26■■■□□ 2.11
CLN3-234ENST00000568472 COPS6Q7L5N1 327 aa28.25■■■□□ 2.11
CLN3-234ENST00000568472 ANXA1P04083 346 aa28.23■■■□□ 2.11
CLN3-234ENST00000568472 TTLL7Q6ZT98 887 aa28.23■■■□□ 2.11
CLN3-234ENST00000568472 XAGE3Q8WTP9 111 aa28.23■■■□□ 2.11
CLN3-234ENST00000568472 ZNF428Q96B54 188 aa28.23■■■□□ 2.11
CLN3-234ENST00000568472 NFIXQ14938 502 aa28.22■■■□□ 2.11
CLN3-234ENST00000568472 CT47B1P0C2W7 299 aaPredicted RBP28.21■■■□□ 2.11
CLN3-234ENST00000568472 SETDB2Q96T68 719 aa28.21■■■□□ 2.11
CLN3-234ENST00000568472 AIMP1Q12904 312 aaKnown RBP28.2■■■□□ 2.1
CLN3-234ENST00000568472 SLC4A2P04920 1241 aa28.19■■■□□ 2.1
CLN3-234ENST00000568472 TBC1D9BQ66K14 1250 aa28.19■■■□□ 2.1
CLN3-234ENST00000568472 GIGYF2Q6Y7W6 1299 aaKnown RBP28.19■■■□□ 2.1
CLN3-234ENST00000568472 ANKRD13DQ6ZTN6 518 aa28.19■■■□□ 2.1
CLN3-234ENST00000568472 ZBTB3Q9H5J0 574 aa28.19■■■□□ 2.1
CLN3-234ENST00000568472 POLRMTO00411 1230 aaKnown RBP28.18■■■□□ 2.1
CLN3-234ENST00000568472 DDX58O95786 925 aaKnown RBP28.18■■■□□ 2.1
CLN3-234ENST00000568472 HLFQ16534 295 aa28.18■■■□□ 2.1
CLN3-234ENST00000568472 HSP90AB3PQ58FF7 597 aa28.18■■■□□ 2.1
CLN3-234ENST00000568472 PLBD2Q8NHP8 589 aa28.18■■■□□ 2.1
CLN3-234ENST00000568472 CD2APQ9Y5K6 639 aa28.18■■■□□ 2.1
CLN3-234ENST00000568472 SCN7AQ01118 1682 aa28.18■■■□□ 2.1
CLN3-234ENST00000568472 DDR1Q08345 913 aa28.17■■■□□ 2.1
CLN3-234ENST00000568472 CARMIL3Q8ND23 1372 aa28.16■■■□□ 2.1
CLN3-234ENST00000568472 BICDL1Q6ZP65 573 aa28.16■■■□□ 2.1
CLN3-234ENST00000568472 SERPINB2P05120 415 aa28.15■■■□□ 2.1
CLN3-234ENST00000568472 FHDC1Q9C0D6 1143 aaPredicted RBP28.15■■■□□ 2.1
CLN3-234ENST00000568472 NIP7Q9Y221 180 aaKnown RBP eCLIP28.15■■■□□ 2.1
CLN3-234ENST00000568472 PHAXQ9H814 394 aaKnown RBP28.14■■■□□ 2.1
CLN3-234ENST00000568472 ATP10DQ9P241 1426 aa28.14■■■□□ 2.1
CLN3-234ENST00000568472 SRCAPQ6ZRS2 3230 aa28.13■■■□□ 2.09
CLN3-234ENST00000568472 BCORQ6W2J9 1755 aa28.13■■■□□ 2.09
CLN3-234ENST00000568472 TCERG1O14776 1098 aaKnown RBP28.12■■■□□ 2.09
CLN3-234ENST00000568472 ZNF34Q8IZ26 560 aa28.12■■■□□ 2.09
CLN3-234ENST00000568472 TCIRG1Q13488 830 aa28.11■■■□□ 2.09
CLN3-234ENST00000568472 ALDH1L2Q3SY69 923 aa28.11■■■□□ 2.09
CLN3-234ENST00000568472 PARP10Q53GL7 1025 aa28.11■■■□□ 2.09
CLN3-234ENST00000568472 RIC3Q7Z5B4 369 aa28.11■■■□□ 2.09
CLN3-234ENST00000568472 SYT17Q9BSW7 474 aa28.11■■■□□ 2.09
CLN3-234ENST00000568472 TPTE2Q6XPS3 522 aa28.1■■■□□ 2.09
CLN3-234ENST00000568472 NYXQ9GZU5 481 aa28.1■■■□□ 2.09
CLN3-234ENST00000568472 FLIIQ13045 1269 aa28.09■■■□□ 2.09
CLN3-234ENST00000568472 KSR2Q6VAB6 950 aa28.09■■■□□ 2.09
CLN3-234ENST00000568472 NBPF5PQ86XG9 351 aaPredicted RBP28.09■■■□□ 2.09
CLN3-234ENST00000568472 TGFB2P61812 414 aa28.08■■■□□ 2.09
CLN3-234ENST00000568472 KLHL34Q8N239 644 aa28.08■■■□□ 2.09
CLN3-234ENST00000568472 NPHP1O15259 732 aa28.07■■■□□ 2.08
CLN3-234ENST00000568472 PPP1R42Q7Z4L9 355 aa28.07■■■□□ 2.08
CLN3-234ENST00000568472 CNBD1Q8NA66 436 aa28.07■■■□□ 2.08
CLN3-234ENST00000568472 TRIM28Q13263 835 aaKnown RBP28.06■■■□□ 2.08
CLN3-234ENST00000568472 G2E3Q7L622 706 aa28.06■■■□□ 2.08
CLN3-234ENST00000568472 C10orf71Q711Q0 1435 aa28.06■■■□□ 2.08
CLN3-234ENST00000568472 PI4KAP2A4QPH2 592 aa28.05■■■□□ 2.08
CLN3-234ENST00000568472 GPTP24298 496 aa28.05■■■□□ 2.08
CLN3-234ENST00000568472 ST5P78524 1137 aa28.05■■■□□ 2.08
CLN3-234ENST00000568472 FKBP5Q13451 457 aaPredicted RBP28.05■■■□□ 2.08
CLN3-234ENST00000568472 PI4KAP1Q8N8J0 262 aa28.05■■■□□ 2.08
CLN3-234ENST00000568472 IBTKQ9P2D0 1353 aaPredicted RBP28.05■■■□□ 2.08
CLN3-234ENST00000568472 PDZRN3Q9UPQ7 1066 aa28.05■■■□□ 2.08
CLN3-234ENST00000568472 RNF123Q5XPI4 1314 aa28.04■■■□□ 2.08
CLN3-234ENST00000568472 PRR5LQ6MZQ0 368 aa28.04■■■□□ 2.08
CLN3-234ENST00000568472 SSH1Q8WYL5 1049 aa28.04■■■□□ 2.08
CLN3-234ENST00000568472 METTL22Q9BUU2 404 aaPredicted RBP28.04■■■□□ 2.08
CLN3-234ENST00000568472 BRIP1Q9BX63 1249 aa28.04■■■□□ 2.08
CLN3-234ENST00000568472 GTF2E1P29083 439 aaPredicted RBP28.03■■■□□ 2.08
CLN3-234ENST00000568472 MRPL50Q8N5N7 158 aaKnown RBP28.03■■■□□ 2.08
CLN3-234ENST00000568472 ISCA1Q9BUE6 129 aa28.03■■■□□ 2.08
CLN3-234ENST00000568472 MAP3K2Q9Y2U5 619 aa28.03■■■□□ 2.08
CLN3-234ENST00000568472 UBN2Q6ZU65 1347 aa28.02■■■□□ 2.08
CLN3-234ENST00000568472 NEXNQ0ZGT2 675 aa28.02■■■□□ 2.08
CLN3-234ENST00000568472 NLRP10Q86W26 655 aa28.02■■■□□ 2.08
CLN3-234ENST00000568472 UTP14AQ9BVJ6 771 aaKnown RBP28.02■■■□□ 2.08
CLN3-234ENST00000568472 CACNA1FO60840 1977 aa28.02■■■□□ 2.08
CLN3-234ENST00000568472 NUP98P52948 1817 aa28.02■■■□□ 2.08
CLN3-234ENST00000568472 PDE6BP35913 854 aa28.01■■■□□ 2.07
CLN3-234ENST00000568472 BRPF1P55201 1214 aaPredicted RBP28.01■■■□□ 2.07
CLN3-234ENST00000568472 SUSD4Q5VX71 490 aa28.01■■■□□ 2.07
CLN3-234ENST00000568472 SMC4Q9NTJ3 1288 aa28.01■■■□□ 2.07
CLN3-234ENST00000568472 NRXN2Q9P2S2 1712 aa28.01■■■□□ 2.07
CLN3-234ENST00000568472 ADCY9O60503 1353 aa27.99■■■□□ 2.07
CLN3-234ENST00000568472 PTPRCP08575 1304 aa27.99■■■□□ 2.07
CLN3-234ENST00000568472 RARSP54136 660 aaKnown RBP27.99■■■□□ 2.07
CLN3-234ENST00000568472 CCDC191Q8NCU4 936 aa27.99■■■□□ 2.07
CLN3-234ENST00000568472 FAM177BA6PVY3 158 aa27.98■■■□□ 2.07
CLN3-234ENST00000568472 NTSR2O95665 410 aa27.98■■■□□ 2.07
CLN3-234ENST00000568472 NLGN2Q8NFZ4 835 aa27.98■■■□□ 2.07
CLN3-234ENST00000568472 DNAAF4Q8WXU2 420 aa27.98■■■□□ 2.07
CLN3-234ENST00000568472 MYD88Q99836 296 aa27.98■■■□□ 2.07
CLN3-234ENST00000568472 ATP5J2-PTCD1G3V325 749 aa27.97■■■□□ 2.07
CLN3-234ENST00000568472 TRMT112Q9UI30 125 aaKnown RBP27.96■■■□□ 2.07
CLN3-234ENST00000568472 DCAF8L1A6NGE4 600 aa27.95■■■□□ 2.06
CLN3-234ENST00000568472 CWC25Q9NXE8 425 aaPredicted RBP27.95■■■□□ 2.06
CLN3-234ENST00000568472 KIF13BQ9NQT8 1826 aa27.95■■■□□ 2.06
CLN3-234ENST00000568472 SH3TC1Q8TE82 1336 aa27.94■■■□□ 2.06
CLN3-234ENST00000568472 H0YIN7 160 aa27.94■■■□□ 2.06
CLN3-234ENST00000568472 HSP90B1P14625 803 aaKnown RBP27.94■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms