RNA–Protein interactions for RNA: ENST00000568219.5

PALB2-206, Transcript of partner and localizer of BRCA2, humanhuman

TSL 1 (best) BASIC

Gene PALB2, Length 3,963 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PALB2-206ENST00000568219 POLR3DP05423 398 aaPredicted RBP12.77□□□□□ -0.37
PALB2-206ENST00000568219 ANKRD1Q15327 319 aa12.77□□□□□ -0.37
PALB2-206ENST00000568219 NOM1Q5C9Z4 860 aaKnown RBP12.77□□□□□ -0.37
PALB2-206ENST00000568219 CCDC171Q6TFL3 1326 aa12.77□□□□□ -0.37
PALB2-206ENST00000568219 EIF2AK4Q9P2K8 1649 aaKnown RBP12.77□□□□□ -0.37
PALB2-206ENST00000568219 IBSPP21815 317 aaPredicted RBP12.77□□□□□ -0.37
PALB2-206ENST00000568219 BRF1Q92994 677 aa12.77□□□□□ -0.37
PALB2-206ENST00000568219 PA2G4Q9UQ80 394 aaKnown RBP12.77□□□□□ -0.37
PALB2-206ENST00000568219 IFT140Q96RY7 1462 aa12.77□□□□□ -0.37
PALB2-206ENST00000568219 PRDM15P57071 1507 aaPredicted RBP12.77□□□□□ -0.37
PALB2-206ENST00000568219 LARGE1O95461 756 aa12.76□□□□□ -0.37
PALB2-206ENST00000568219 KRBA2Q6ZNG9 492 aa12.76□□□□□ -0.37
PALB2-206ENST00000568219 CCDC191Q8NCU4 936 aa12.76□□□□□ -0.37
PALB2-206ENST00000568219 MTMR6Q9Y217 621 aa12.76□□□□□ -0.37
PALB2-206ENST00000568219 NSD2O96028 1365 aa12.76□□□□□ -0.37
PALB2-206ENST00000568219 ITSN2Q9NZM3 1697 aa12.76□□□□□ -0.37
PALB2-206ENST00000568219 KIAA0556O60303 1618 aa12.76□□□□□ -0.37
PALB2-206ENST00000568219 NPHP3Q7Z494 1330 aa12.76□□□□□ -0.37
PALB2-206ENST00000568219 HSPA4P34932 840 aa12.76□□□□□ -0.37
PALB2-206ENST00000568219 GNG11P61952 73 aa12.76□□□□□ -0.37
PALB2-206ENST00000568219 STX1AQ16623 288 aa12.76□□□□□ -0.37
PALB2-206ENST00000568219 SHANK2Q9UPX8 1470 aa12.75□□□□□ -0.37
PALB2-206ENST00000568219 ADCK5Q3MIX3 580 aa12.75□□□□□ -0.37
PALB2-206ENST00000568219 ERO1AQ96HE7 468 aa12.75□□□□□ -0.37
PALB2-206ENST00000568219 RTL1A6NKG5 1358 aa12.75□□□□□ -0.37
PALB2-206ENST00000568219 POLR1AO95602 1720 aaPredicted RBP12.75□□□□□ -0.37
PALB2-206ENST00000568219 APPP05067 770 aa12.75□□□□□ -0.37
PALB2-206ENST00000568219 FAM193AP78312 1265 aa12.75□□□□□ -0.37
PALB2-206ENST00000568219 TERF2Q15554 542 aa12.75□□□□□ -0.37
PALB2-206ENST00000568219 ME3Q16798 604 aa12.75□□□□□ -0.37
PALB2-206ENST00000568219 ZNF396Q96N95 335 aaPredicted RBP12.75□□□□□ -0.37
PALB2-206ENST00000568219 IFNKQ9P0W0 207 aa12.75□□□□□ -0.37
PALB2-206ENST00000568219 MRVI1Q9Y6F6 885 aa12.75□□□□□ -0.37
PALB2-206ENST00000568219 CEP170Q5SW79 1584 aa12.75□□□□□ -0.37
PALB2-206ENST00000568219 ZNF518AQ6AHZ1 1483 aa12.75□□□□□ -0.37
PALB2-206ENST00000568219 GTF2E1P29083 439 aaPredicted RBP12.75□□□□□ -0.37
PALB2-206ENST00000568219 DHX37Q8IY37 1157 aaKnown RBP12.75□□□□□ -0.37
PALB2-206ENST00000568219 CPLX3Q8WVH0 158 aa12.75□□□□□ -0.37
PALB2-206ENST00000568219 NUDT16Q96DE0 195 aaKnown RBP12.75□□□□□ -0.37
PALB2-206ENST00000568219 CTNNA3Q9UI47 895 aa12.75□□□□□ -0.37
PALB2-206ENST00000568219 PI4KAP2A4QPH2 592 aa12.74□□□□□ -0.37
PALB2-206ENST00000568219 NEMFO60524 1076 aa12.74□□□□□ -0.37
PALB2-206ENST00000568219 PI4KAP1Q8N8J0 262 aa12.74□□□□□ -0.37
PALB2-206ENST00000568219 RNF216Q9NWF9 866 aaPredicted RBP12.74□□□□□ -0.37
PALB2-206ENST00000568219 CD109Q6YHK3 1445 aa12.74□□□□□ -0.37
PALB2-206ENST00000568219 KIF2AO00139 706 aaPredicted RBP12.74□□□□□ -0.37
PALB2-206ENST00000568219 SGSM2O43147 1006 aa12.74□□□□□ -0.37
PALB2-206ENST00000568219 NLRP6P59044 892 aa12.74□□□□□ -0.37
PALB2-206ENST00000568219 FBXO38Q6PIJ6 1188 aa12.74□□□□□ -0.37
PALB2-206ENST00000568219 OLFM4Q6UX06 510 aa12.74□□□□□ -0.37
PALB2-206ENST00000568219 ECHDC1Q9NTX5 307 aa12.74□□□□□ -0.37
PALB2-206ENST00000568219 EIF4G3O43432 1585 aaKnown RBP12.74□□□□□ -0.37
PALB2-206ENST00000568219 USHBP1Q8N6Y0 703 aa12.74□□□□□ -0.37
PALB2-206ENST00000568219 SPTLC3Q9NUV7 552 aa12.74□□□□□ -0.37
PALB2-206ENST00000568219 JAK2O60674 1132 aa12.73□□□□□ -0.37
PALB2-206ENST00000568219 PTH1RQ03431 593 aa12.73□□□□□ -0.37
PALB2-206ENST00000568219 PTPN21Q16825 1174 aa12.73□□□□□ -0.37
PALB2-206ENST00000568219 A0A0G2JS52 829 aa12.73□□□□□ -0.37
PALB2-206ENST00000568219 USP27XA6NNY8 438 aa12.73□□□□□ -0.37
PALB2-206ENST00000568219 TULP1O00294 542 aaPredicted RBP12.73□□□□□ -0.37
PALB2-206ENST00000568219 LEO1Q8WVC0 666 aaPredicted RBP12.73□□□□□ -0.37
PALB2-206ENST00000568219 PHAXQ9H814 394 aaKnown RBP12.73□□□□□ -0.37
PALB2-206ENST00000568219 DDX41Q9UJV9 622 aaKnown RBP12.73□□□□□ -0.37
PALB2-206ENST00000568219 KMT5BQ4FZB7 885 aa12.73□□□□□ -0.37
PALB2-206ENST00000568219 PAXIP1Q6ZW49 1069 aaPredicted RBP12.73□□□□□ -0.37
PALB2-206ENST00000568219 CHST3Q7LGC8 479 aa12.73□□□□□ -0.37
PALB2-206ENST00000568219 RIC3Q7Z5B4 369 aa12.73□□□□□ -0.37
PALB2-206ENST00000568219 CARD6Q9BX69 1037 aa12.73□□□□□ -0.37
PALB2-206ENST00000568219 RSPH14Q9UHP6 348 aa12.73□□□□□ -0.37
PALB2-206ENST00000568219 SYNMO15061 1565 aa12.73□□□□□ -0.37
PALB2-206ENST00000568219 FBXO31Q5XUX0 539 aaPredicted RBP12.72□□□□□ -0.37
PALB2-206ENST00000568219 LRRC8AQ8IWT6 810 aa12.72□□□□□ -0.37
PALB2-206ENST00000568219 IPO4Q8TEX9 1081 aaKnown RBP12.72□□□□□ -0.37
PALB2-206ENST00000568219 FAM227BQ96M60 508 aa12.72□□□□□ -0.37
PALB2-206ENST00000568219 HDAC5Q9UQL6 1122 aa12.72□□□□□ -0.37
PALB2-206ENST00000568219 RAD50Q92878 1312 aa12.72□□□□□ -0.37
PALB2-206ENST00000568219 AP5Z1O43299 807 aa12.72□□□□□ -0.37
PALB2-206ENST00000568219 WASHC4Q2M389 1173 aa12.72□□□□□ -0.37
PALB2-206ENST00000568219 UTP14AQ9BVJ6 771 aaKnown RBP12.72□□□□□ -0.37
PALB2-206ENST00000568219 CCDC61Q9Y6R9 512 aa12.72□□□□□ -0.37
PALB2-206ENST00000568219 A0A1B0GVL5 298 aa12.72□□□□□ -0.37
PALB2-206ENST00000568219 HNRNPH2P55795 449 aaKnown RBP12.72□□□□□ -0.37
PALB2-206ENST00000568219 IRX5P78411 483 aaPredicted RBP12.72□□□□□ -0.37
PALB2-206ENST00000568219 AXDND1Q5T1B0 1012 aaPredicted RBP12.72□□□□□ -0.37
PALB2-206ENST00000568219 CREB3L3Q68CJ9 461 aa12.72□□□□□ -0.37
PALB2-206ENST00000568219 TRPM1Q7Z4N2 1603 aa12.72□□□□□ -0.37
PALB2-206ENST00000568219 TOP1P11387 765 aaKnown RBP12.71□□□□□ -0.37
PALB2-206ENST00000568219 IL13P35225 146 aa12.71□□□□□ -0.37
PALB2-206ENST00000568219 GSDMDP57764 484 aa12.71□□□□□ -0.37
PALB2-206ENST00000568219 IRX3P78415 501 aaPredicted RBP12.71□□□□□ -0.37
PALB2-206ENST00000568219 EIF4A2Q14240 407 aaKnown RBP12.71□□□□□ -0.37
PALB2-206ENST00000568219 PDIA4P13667 645 aaKnown RBP12.71□□□□□ -0.37
PALB2-206ENST00000568219 CASQ1P31415 396 aa12.71□□□□□ -0.37
PALB2-206ENST00000568219 ARFGAP3Q9NP61 516 aa12.71□□□□□ -0.37
PALB2-206ENST00000568219 ZCCHC17Q9NP64 241 aaKnown RBP12.71□□□□□ -0.37
PALB2-206ENST00000568219 SLC3A2P08195 630 aaKnown RBP12.71□□□□□ -0.38
PALB2-206ENST00000568219 CCDC144BQ3MJ40 725 aa12.71□□□□□ -0.38
PALB2-206ENST00000568219 CCDC144CPQ8IYA2 1237 aa12.71□□□□□ -0.38
PALB2-206ENST00000568219 RPGRIP1LQ68CZ1 1315 aa12.71□□□□□ -0.38
PALB2-206ENST00000568219 SEC31AO94979 1220 aaKnown RBP12.71□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms