RNA–Protein interactions for RNA: ENST00000567805.5

CLK3-219, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 327 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-219ENST00000567805 DCTN1Q14203 1278 aa6.33□□□□□ -1.4
CLK3-219ENST00000567805 NFIXQ14938 502 aa6.33□□□□□ -1.4
CLK3-219ENST00000567805 TAF7Q15545 349 aaPredicted RBP6.33□□□□□ -1.4
CLK3-219ENST00000567805 NPM2Q86SE8 214 aaKnown RBP6.33□□□□□ -1.4
CLK3-219ENST00000567805 BCL2L12Q9HB09 334 aa6.33□□□□□ -1.4
CLK3-219ENST00000567805 WWC3Q9ULE0 1092 aa6.33□□□□□ -1.4
CLK3-219ENST00000567805 ADCY9O60503 1353 aa6.32□□□□□ -1.4
CLK3-219ENST00000567805 CACNA1SQ13698 1873 aa6.32□□□□□ -1.4
CLK3-219ENST00000567805 NUP98P52948 1817 aa6.32□□□□□ -1.4
CLK3-219ENST00000567805 ARFGEF2Q9Y6D5 1785 aa6.32□□□□□ -1.4
CLK3-219ENST00000567805 A1BGP04217 495 aa6.32□□□□□ -1.4
CLK3-219ENST00000567805 DPEP1P16444 411 aa6.32□□□□□ -1.4
CLK3-219ENST00000567805 KCNA3P22001 575 aa6.32□□□□□ -1.4
CLK3-219ENST00000567805 ZEB1P37275 1124 aaPredicted RBP6.32□□□□□ -1.4
CLK3-219ENST00000567805 PNISRQ8TF01 805 aaKnown RBP6.32□□□□□ -1.4
CLK3-219ENST00000567805 PIM2Q9P1W9 311 aa6.32□□□□□ -1.4
CLK3-219ENST00000567805 BCS1LQ9Y276 419 aa6.32□□□□□ -1.4
CLK3-219ENST00000567805 ZNF330Q9Y3S2 320 aaPredicted RBP6.32□□□□□ -1.4
CLK3-219ENST00000567805 USP16Q9Y5T5 823 aa6.32□□□□□ -1.4
CLK3-219ENST00000567805 CCDC88AQ3V6T2 1871 aa6.32□□□□□ -1.4
CLK3-219ENST00000567805 CARMIL3Q8ND23 1372 aa6.31□□□□□ -1.4
CLK3-219ENST00000567805 COL11A2P13942 1736 aaPredicted RBP6.31□□□□□ -1.4
CLK3-219ENST00000567805 PRAMEF22A3QJZ6 481 aa6.31□□□□□ -1.4
CLK3-219ENST00000567805 SERPINB2P05120 415 aa6.31□□□□□ -1.4
CLK3-219ENST00000567805 LMOD3Q0VAK6 560 aa6.31□□□□□ -1.4
CLK3-219ENST00000567805 DALRD3Q5D0E6 543 aaKnown RBP6.31□□□□□ -1.4
CLK3-219ENST00000567805 PCDH10Q9P2E7 1040 aa6.31□□□□□ -1.4
CLK3-219ENST00000567805 TBC1D2BQ9UPU7 963 aa6.31□□□□□ -1.4
CLK3-219ENST00000567805 ATP10DQ9P241 1426 aa6.31□□□□□ -1.4
CLK3-219ENST00000567805 RGL2O15211 777 aa6.3□□□□□ -1.4
CLK3-219ENST00000567805 GIGYF1O75420 1035 aaPredicted RBP6.3□□□□□ -1.4
CLK3-219ENST00000567805 CAMTA2O94983 1202 aa6.3□□□□□ -1.4
CLK3-219ENST00000567805 TMPOP42166 694 aaKnown RBP6.3□□□□□ -1.4
CLK3-219ENST00000567805 RIPK4P57078 832 aa6.3□□□□□ -1.4
CLK3-219ENST00000567805 WDR43Q15061 677 aaKnown RBP eCLIP6.3□□□□□ -1.4
CLK3-219ENST00000567805 TBC1D9BQ66K14 1250 aa6.3□□□□□ -1.4
CLK3-219ENST00000567805 CLEC4GQ6UXB4 293 aa6.3□□□□□ -1.4
CLK3-219ENST00000567805 BICDL1Q6ZP65 573 aa6.3□□□□□ -1.4
CLK3-219ENST00000567805 DZIP3Q86Y13 1208 aaKnown RBP6.3□□□□□ -1.4
CLK3-219ENST00000567805 SETDB2Q96T68 719 aa6.3□□□□□ -1.4
CLK3-219ENST00000567805 THUMPD2Q9BTF0 503 aaKnown RBP6.3□□□□□ -1.4
CLK3-219ENST00000567805 PRKRIP1Q9H875 184 aaPredicted RBP6.3□□□□□ -1.4
CLK3-219ENST00000567805 BABAM1Q9NWV8 329 aa6.3□□□□□ -1.4
CLK3-219ENST00000567805 MIS18AQ9NYP9 233 aa6.3□□□□□ -1.4
CLK3-219ENST00000567805 PDZRN3Q9UPQ7 1066 aa6.3□□□□□ -1.4
CLK3-219ENST00000567805 ZNF652Q9Y2D9 606 aa6.3□□□□□ -1.4
CLK3-219ENST00000567805 CEP350Q5VT06 3117 aa6.3□□□□□ -1.4
CLK3-219ENST00000567805 DICER1Q9UPY3 1922 aaKnown RBP6.3□□□□□ -1.4
CLK3-219ENST00000567805 FER1L6Q2WGJ9 1857 aa6.3□□□□□ -1.4
CLK3-219ENST00000567805 ANKRD36CQ5JPF3 1778 aa6.29□□□□□ -1.4
CLK3-219ENST00000567805 NBPF26B4DH59 902 aa6.29□□□□□ -1.4
CLK3-219ENST00000567805 H0YIN7 160 aa6.29□□□□□ -1.4
CLK3-219ENST00000567805 CHRNA5P30532 468 aa6.29□□□□□ -1.4
CLK3-219ENST00000567805 PDE6BP35913 854 aa6.29□□□□□ -1.4
CLK3-219ENST00000567805 PIP4K2AP48426 406 aaPredicted RBP6.29□□□□□ -1.4
CLK3-219ENST00000567805 C1QTNF8P60827 252 aa6.29□□□□□ -1.4
CLK3-219ENST00000567805 EIF4A1P60842 406 aaKnown RBP6.29□□□□□ -1.4
CLK3-219ENST00000567805 NBPF10Q6P3W6 841 aaKnown RBP6.29□□□□□ -1.4
CLK3-219ENST00000567805 ARHGAP27Q6ZUM4 889 aa6.29□□□□□ -1.4
CLK3-219ENST00000567805 TIAM2Q8IVF5 1701 aa6.29□□□□□ -1.4
CLK3-219ENST00000567805 NBPF15Q8N660 670 aa6.29□□□□□ -1.4
CLK3-219ENST00000567805 CNBD1Q8NA66 436 aa6.29□□□□□ -1.4
CLK3-219ENST00000567805 RUNDC1Q96C34 613 aa6.29□□□□□ -1.4
CLK3-219ENST00000567805 BRIP1Q9BX63 1249 aa6.29□□□□□ -1.4
CLK3-219ENST00000567805 GPBP1L1Q9HC44 474 aaPredicted RBP6.29□□□□□ -1.4
CLK3-219ENST00000567805 CREBZFQ9NS37 354 aa6.29□□□□□ -1.4
CLK3-219ENST00000567805 TSPYL4Q9UJ04 414 aa6.29□□□□□ -1.4
CLK3-219ENST00000567805 SLX4Q8IY92 1834 aa6.28□□□□□ -1.4
CLK3-219ENST00000567805 NPHP1O15259 732 aa6.28□□□□□ -1.4
CLK3-219ENST00000567805 ST5P78524 1137 aa6.28□□□□□ -1.4
CLK3-219ENST00000567805 PRR5LQ6MZQ0 368 aa6.28□□□□□ -1.4
CLK3-219ENST00000567805 C2CD5Q86YS7 1000 aa6.28□□□□□ -1.4
CLK3-219ENST00000567805 CCDC146Q8IYE0 955 aa6.28□□□□□ -1.4
CLK3-219ENST00000567805 TTLL6Q8N841 843 aa6.28□□□□□ -1.4
CLK3-219ENST00000567805 ADAMTS8Q9UP79 889 aa6.28□□□□□ -1.4
CLK3-219ENST00000567805 TNRC6CQ9HCJ0 1690 aaKnown RBP6.28□□□□□ -1.4
CLK3-219ENST00000567805 ERBB4Q15303 1308 aa6.27□□□□□ -1.41
CLK3-219ENST00000567805 ERVV-1B6SEH8 477 aa6.27□□□□□ -1.41
CLK3-219ENST00000567805 POTEJP0CG39 1038 aa6.27□□□□□ -1.41
CLK3-219ENST00000567805 NEUROD2Q15784 382 aa6.27□□□□□ -1.41
CLK3-219ENST00000567805 KIF6Q6ZMV9 814 aa6.27□□□□□ -1.41
CLK3-219ENST00000567805 NBPF5PQ86XG9 351 aaPredicted RBP6.27□□□□□ -1.41
CLK3-219ENST00000567805 ZNF526Q8TF50 670 aaPredicted RBP6.27□□□□□ -1.41
CLK3-219ENST00000567805 PHF12Q96QT6 1004 aa6.27□□□□□ -1.41
CLK3-219ENST00000567805 RRP7AQ9Y3A4 280 aaKnown RBP6.27□□□□□ -1.41
CLK3-219ENST00000567805 MAP3K15Q6ZN16 1313 aa6.26□□□□□ -1.41
CLK3-219ENST00000567805 MYL6BP14649 208 aa6.26□□□□□ -1.41
CLK3-219ENST00000567805 HLFQ16534 295 aa6.26□□□□□ -1.41
CLK3-219ENST00000567805 C9orf131Q5VYM1 1079 aa6.26□□□□□ -1.41
CLK3-219ENST00000567805 STYK1Q6J9G0 422 aa6.26□□□□□ -1.41
CLK3-219ENST00000567805 TPTE2Q6XPS3 522 aa6.26□□□□□ -1.41
CLK3-219ENST00000567805 CNKSR1Q969H4 720 aa6.26□□□□□ -1.41
CLK3-219ENST00000567805 ZNF622Q969S3 477 aaKnown RBP eCLIP6.26□□□□□ -1.413e-8■□□□□ 10.7
CLK3-219ENST00000567805 NYXQ9GZU5 481 aa6.26□□□□□ -1.41
CLK3-219ENST00000567805 TRIM35Q9UPQ4 493 aa6.26□□□□□ -1.41
CLK3-219ENST00000567805 NIP7Q9Y221 180 aaKnown RBP eCLIP6.26□□□□□ -1.41
CLK3-219ENST00000567805 ZC3H4Q9UPT8 1303 aaKnown RBP6.25□□□□□ -1.41
CLK3-219ENST00000567805 KLRG2A4D1S0 409 aaPredicted RBP6.25□□□□□ -1.41
CLK3-219ENST00000567805 CHL1O00533 1208 aa6.25□□□□□ -1.41
CLK3-219ENST00000567805 SRGNP10124 158 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms