RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 KCNQ3O43525 872 aa22.49■■□□□ 1.19
CLN3-217ENST00000565354 VSIG10Q8N0Z9 540 aa22.49■■□□□ 1.19
CLN3-217ENST00000565354 ZNF496Q96IT1 587 aaPredicted RBP22.49■■□□□ 1.19
CLN3-217ENST00000565354 SALL2Q9Y467 1007 aaPredicted RBP22.49■■□□□ 1.19
CLN3-217ENST00000565354 SERPINB2P05120 415 aa22.48■■□□□ 1.19
CLN3-217ENST00000565354 HSPA1AP0DMV8 641 aaKnown RBP22.48■■□□□ 1.19
CLN3-217ENST00000565354 HSPA1BP0DMV9 641 aaKnown RBP22.48■■□□□ 1.19
CLN3-217ENST00000565354 BCL2L12Q9HB09 334 aa22.48■■□□□ 1.19
CLN3-217ENST00000565354 HEG1Q9ULI3 1381 aa22.48■■□□□ 1.19
CLN3-217ENST00000565354 C2CD5Q86YS7 1000 aa22.47■■□□□ 1.19
CLN3-217ENST00000565354 ZBTB1Q9Y2K1 713 aa22.47■■□□□ 1.19
CLN3-217ENST00000565354 DICER1Q9UPY3 1922 aaKnown RBP22.47■■□□□ 1.19
CLN3-217ENST00000565354 H0YIN7 160 aa22.46■■□□□ 1.19
CLN3-217ENST00000565354 NFKBIEO00221 500 aa22.46■■□□□ 1.19
CLN3-217ENST00000565354 TEX13AQ9BXU3 409 aaPredicted RBP22.46■■□□□ 1.19
CLN3-217ENST00000565354 KDM3BQ7LBC6 1761 aa22.45■■□□□ 1.19
CLN3-217ENST00000565354 BABAM1Q9NWV8 329 aa22.45■■□□□ 1.18
CLN3-217ENST00000565354 POTECB2RU33 542 aa22.44■■□□□ 1.18
CLN3-217ENST00000565354 STARD3NLO95772 234 aa22.44■■□□□ 1.18
CLN3-217ENST00000565354 ANKRD31Q8N7Z5 1873 aa22.44■■□□□ 1.18
CLN3-217ENST00000565354 CARMIL3Q8ND23 1372 aa22.44■■□□□ 1.18
CLN3-217ENST00000565354 FER1L6Q2WGJ9 1857 aa22.43■■□□□ 1.18
CLN3-217ENST00000565354 CCDC27Q2M243 656 aa22.43■■□□□ 1.18
CLN3-217ENST00000565354 DPY19L2Q6NUT2 758 aa22.43■■□□□ 1.18
CLN3-217ENST00000565354 SNRPA1P09661 255 aaKnown RBP22.42■■□□□ 1.18
CLN3-217ENST00000565354 NCBP3Q53F19 620 aaKnown RBP22.42■■□□□ 1.18
CLN3-217ENST00000565354 GNAI1P63096 354 aa22.41■■□□□ 1.18
CLN3-217ENST00000565354 WWC1Q8IX03 1113 aa22.41■■□□□ 1.18
CLN3-217ENST00000565354 NGEFQ8N5V2 710 aa22.41■■□□□ 1.18
CLN3-217ENST00000565354 CANXP27824 592 aaKnown RBP22.4■■□□□ 1.18
CLN3-217ENST00000565354 EIF4A1P60842 406 aaKnown RBP22.4■■□□□ 1.18
CLN3-217ENST00000565354 CFAP44Q96MT7 982 aa22.4■■□□□ 1.18
CLN3-217ENST00000565354 IFT57Q9NWB7 429 aa22.4■■□□□ 1.18
CLN3-217ENST00000565354 CHL1O00533 1208 aa22.39■■□□□ 1.17
CLN3-217ENST00000565354 BICDL1Q6ZP65 573 aa22.39■■□□□ 1.17
CLN3-217ENST00000565354 COL11A2P13942 1736 aaPredicted RBP22.39■■□□□ 1.17
CLN3-217ENST00000565354 NPM2Q86SE8 214 aaKnown RBP22.38■■□□□ 1.17
CLN3-217ENST00000565354 PDZRN3Q9UPQ7 1066 aa22.38■■□□□ 1.17
CLN3-217ENST00000565354 SCN7AQ01118 1682 aa22.37■■□□□ 1.17
CLN3-217ENST00000565354 A0A087WZG4 1122 aa22.37■■□□□ 1.17
CLN3-217ENST00000565354 EIF5P55010 431 aaKnown RBP22.37■■□□□ 1.17
CLN3-217ENST00000565354 ERFEQ4G0M1 354 aa22.37■■□□□ 1.17
CLN3-217ENST00000565354 ZNF622Q969S3 477 aaKnown RBP eCLIP22.37■■□□□ 1.17
CLN3-217ENST00000565354 PRAMEF22A3QJZ6 481 aa22.36■■□□□ 1.17
CLN3-217ENST00000565354 C21orf2O43822 256 aa22.36■■□□□ 1.17
CLN3-217ENST00000565354 PDE6BP35913 854 aa22.36■■□□□ 1.17
CLN3-217ENST00000565354 BRIP1Q9BX63 1249 aa22.36■■□□□ 1.17
CLN3-217ENST00000565354 CREBZFQ9NS37 354 aa22.36■■□□□ 1.17
CLN3-217ENST00000565354 MBIPQ9NS73 344 aa22.36■■□□□ 1.17
CLN3-217ENST00000565354 ZNF330Q9Y3S2 320 aaPredicted RBP22.36■■□□□ 1.17
CLN3-217ENST00000565354 USP16Q9Y5T5 823 aa22.36■■□□□ 1.17
CLN3-217ENST00000565354 CACNA1SQ13698 1873 aa22.35■■□□□ 1.17
CLN3-217ENST00000565354 TBC1D9BQ66K14 1250 aa22.35■■□□□ 1.17
CLN3-217ENST00000565354 CHADLQ6NUI6 762 aa22.35■■□□□ 1.17
CLN3-217ENST00000565354 ZNF219Q9P2Y4 722 aaPredicted RBP22.35■■□□□ 1.17
CLN3-217ENST00000565354 LTBP3Q9NS15 1303 aa22.34■■□□□ 1.17
CLN3-217ENST00000565354 ZNF853P0CG23 659 aa22.34■■□□□ 1.17
CLN3-217ENST00000565354 WDR63Q8IWG1 891 aa22.34■■□□□ 1.17
CLN3-217ENST00000565354 LAMB4A4D0S4 1761 aa22.34■■□□□ 1.17
CLN3-217ENST00000565354 SLX4Q8IY92 1834 aa22.34■■□□□ 1.17
CLN3-217ENST00000565354 IL16Q14005 1332 aa22.33■■□□□ 1.17
CLN3-217ENST00000565354 A1BGP04217 495 aa22.33■■□□□ 1.17
CLN3-217ENST00000565354 PRR5LQ6MZQ0 368 aa22.33■■□□□ 1.17
CLN3-217ENST00000565354 TAOK3Q9H2K8 898 aa22.32■■□□□ 1.16
CLN3-217ENST00000565354 MKRN1Q9UHC7 482 aaKnown RBP22.32■■□□□ 1.16
CLN3-217ENST00000565354 ARFGEF2Q9Y6D5 1785 aa22.32■■□□□ 1.16
CLN3-217ENST00000565354 EIF2S2P20042 333 aaKnown RBP22.31■■□□□ 1.16
CLN3-217ENST00000565354 CCDC24Q8N4L8 307 aa22.31■■□□□ 1.16
CLN3-217ENST00000565354 POTEIP0CG38 1075 aa22.3■■□□□ 1.16
CLN3-217ENST00000565354 POTEJP0CG39 1038 aa22.3■■□□□ 1.16
CLN3-217ENST00000565354 TBC1D2BQ9UPU7 963 aa22.3■■□□□ 1.16
CLN3-217ENST00000565354 DDNO94850 711 aaPredicted RBP22.29■■□□□ 1.16
CLN3-217ENST00000565354 IL6STP40189 918 aaPredicted RBP22.29■■□□□ 1.16
CLN3-217ENST00000565354 PIP4K2AP48426 406 aaPredicted RBP22.29■■□□□ 1.16
CLN3-217ENST00000565354 KRT24Q2M2I5 525 aa22.29■■□□□ 1.16
CLN3-217ENST00000565354 TSR2Q969E8 191 aaKnown RBP22.29■■□□□ 1.16
CLN3-217ENST00000565354 CNKSR1Q969H4 720 aa22.29■■□□□ 1.16
CLN3-217ENST00000565354 SCN4AP35499 1836 aa22.29■■□□□ 1.16
CLN3-217ENST00000565354 MYH16Q9H6N6 1097 aa22.28■■□□□ 1.16
CLN3-217ENST00000565354 CNTNAP1P78357 1384 aa22.27■■□□□ 1.16
CLN3-217ENST00000565354 SOGA3Q5TF21 947 aa22.27■■□□□ 1.16
CLN3-217ENST00000565354 DUSP27Q5VZP5 1158 aa22.27■■□□□ 1.16
CLN3-217ENST00000565354 STYK1Q6J9G0 422 aa22.27■■□□□ 1.16
CLN3-217ENST00000565354 CNBD1Q8NA66 436 aa22.27■■□□□ 1.16
CLN3-217ENST00000565354 NECTIN2Q92692 538 aa22.27■■□□□ 1.16
CLN3-217ENST00000565354 SETDB2Q96T68 719 aa22.27■■□□□ 1.16
CLN3-217ENST00000565354 BCORQ6W2J9 1755 aa22.26■■□□□ 1.15
CLN3-217ENST00000565354 HOXB7P09629 217 aa22.26■■□□□ 1.15
CLN3-217ENST00000565354 PRPF40BQ6NWY9 871 aaKnown RBP22.26■■□□□ 1.15
CLN3-217ENST00000565354 IQCA1LA6NCM1 817 aa22.25■■□□□ 1.15
CLN3-217ENST00000565354 ELL2O00472 640 aaPredicted RBP22.25■■□□□ 1.15
CLN3-217ENST00000565354 NPHP1O15259 732 aa22.25■■□□□ 1.15
CLN3-217ENST00000565354 FOXN1O15353 648 aa22.25■■□□□ 1.15
CLN3-217ENST00000565354 SRGNP10124 158 aa22.25■■□□□ 1.15
CLN3-217ENST00000565354 MYL6BP14649 208 aa22.25■■□□□ 1.15
CLN3-217ENST00000565354 GOLGA2Q08379 1002 aa22.25■■□□□ 1.15
CLN3-217ENST00000565354 HDGFL1Q5TGJ6 251 aa22.25■■□□□ 1.15
CLN3-217ENST00000565354 ERBB4Q15303 1308 aa22.25■■□□□ 1.15
CLN3-217ENST00000565354 PASKQ96RG2 1323 aa22.25■■□□□ 1.15
CLN3-217ENST00000565354 FANCIQ9NVI1 1328 aa22.25■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms