RNA–Protein interactions for RNA: ENST00000564228.5

TCF4-222, Transcript of transcription factor 4, human

TSL 1 (best) BASIC

Gene TCF4, Length 1,915 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-222	ENST00000564228	PRIM1	P49642	420 aa	Known RBP	13.45	□□□□□ -0.26
TCF4-222	ENST00000564228	TWISTNB	Q3B726	338 aa	Predicted RBP	13.45	□□□□□ -0.26
TCF4-222	ENST00000564228	MCTP1	Q6DN14	999 aa		13.45	□□□□□ -0.26
TCF4-222	ENST00000564228	CHD1L	Q86WJ1	897 aa		13.45	□□□□□ -0.26
TCF4-222	ENST00000564228	DCAF5	Q96JK2	942 aa		13.45	□□□□□ -0.26
TCF4-222	ENST00000564228	ZBTB40	Q9NUA8	1239 aa		13.45	□□□□□ -0.26
TCF4-222	ENST00000564228	BTBD11	A6QL63	1104 aa		13.45	□□□□□ -0.26
TCF4-222	ENST00000564228	RABEP1	Q15276	862 aa		13.45	□□□□□ -0.26
TCF4-222	ENST00000564228	ATF7IP	Q6VMQ6	1270 aa		13.45	□□□□□ -0.26
TCF4-222	ENST00000564228	THRAP3	Q9Y2W1	955 aa	Known RBP	13.45	□□□□□ -0.26
TCF4-222	ENST00000564228	AFF2	P51816	1311 aa		13.44	□□□□□ -0.26
TCF4-222	ENST00000564228	TRIM27	P14373	513 aa		13.44	□□□□□ -0.26
TCF4-222	ENST00000564228	PPP4R3B	Q5MIZ7	849 aa		13.44	□□□□□ -0.26
TCF4-222	ENST00000564228	SMC4	Q9NTJ3	1288 aa		13.44	□□□□□ -0.26
TCF4-222	ENST00000564228	EXOC5	O00471	708 aa		13.43	□□□□□ -0.26
TCF4-222	ENST00000564228	VAMP4	O75379	141 aa		13.43	□□□□□ -0.26
TCF4-222	ENST00000564228	VPS72	Q15906	364 aa		13.43	□□□□□ -0.26
TCF4-222	ENST00000564228	SLC52A2	Q9HAB3	445 aa		13.43	□□□□□ -0.26
TCF4-222	ENST00000564228	TOGARAM1	Q9Y4F4	1720 aa		13.43	□□□□□ -0.26
TCF4-222	ENST00000564228	ITGB4	P16144	1822 aa		13.43	□□□□□ -0.26
TCF4-222	ENST00000564228	ITPRIP	Q8IWB1	547 aa		13.43	□□□□□ -0.26
TCF4-222	ENST00000564228	NFATC2IP	Q8NCF5	419 aa		13.43	□□□□□ -0.26
TCF4-222	ENST00000564228	SSH1	Q8WYL5	1049 aa		13.43	□□□□□ -0.26
TCF4-222	ENST00000564228	CDCA7	Q9BWT1	371 aa	Predicted RBP	13.43	□□□□□ -0.26
TCF4-222	ENST00000564228	TNS2	Q63HR2	1409 aa		13.42	□□□□□ -0.26
TCF4-222	ENST00000564228	MBD3	O95983	291 aa		13.42	□□□□□ -0.26
TCF4-222	ENST00000564228	FAM98C	Q17RN3	349 aa	Known RBP	13.42	□□□□□ -0.26
TCF4-222	ENST00000564228	TBC1D9	Q6ZT07	1266 aa		13.42	□□□□□ -0.26
TCF4-222	ENST00000564228	GCC1	Q96CN9	775 aa		13.42	□□□□□ -0.26
TCF4-222	ENST00000564228	BABAM1	Q9NWV8	329 aa		13.42	□□□□□ -0.26
TCF4-222	ENST00000564228	MRC1	P22897	1456 aa		13.41	□□□□□ -0.26
TCF4-222	ENST00000564228		A0A0G2JS52	829 aa		13.41	□□□□□ -0.26
TCF4-222	ENST00000564228	KCNQ3	O43525	872 aa		13.41	□□□□□ -0.26
TCF4-222	ENST00000564228	CABP4	P57796	275 aa		13.41	□□□□□ -0.26
TCF4-222	ENST00000564228	PDE4C	Q08493	712 aa		13.41	□□□□□ -0.26
TCF4-222	ENST00000564228	DDB1	Q16531	1140 aa		13.41	□□□□□ -0.26
TCF4-222	ENST00000564228	ZNF710	Q8N1W2	664 aa		13.41	□□□□□ -0.26
TCF4-222	ENST00000564228	BARGIN	Q6ZT62	677 aa		13.41	□□□□□ -0.26
TCF4-222	ENST00000564228	GPT2	Q8TD30	523 aa		13.41	□□□□□ -0.26
TCF4-222	ENST00000564228	LNPK	Q9C0E8	428 aa		13.41	□□□□□ -0.26
TCF4-222	ENST00000564228	CACNA1F	O60840	1977 aa		13.4	□□□□□ -0.26
TCF4-222	ENST00000564228	IPO8	O15397	1037 aa	Known RBP	13.4	□□□□□ -0.26
TCF4-222	ENST00000564228	CDC45	O75419	566 aa		13.4	□□□□□ -0.26
TCF4-222	ENST00000564228	SLC39A6	Q13433	755 aa		13.4	□□□□□ -0.26
TCF4-222	ENST00000564228	NKX1-1	Q15270	411 aa	Predicted RBP	13.4	□□□□□ -0.26
TCF4-222	ENST00000564228	PIBF1	Q8WXW3	757 aa		13.4	□□□□□ -0.26
TCF4-222	ENST00000564228	ZNF428	Q96B54	188 aa		13.4	□□□□□ -0.26
TCF4-222	ENST00000564228	CHMP4B	Q9H444	224 aa	Known RBP	13.4	□□□□□ -0.26
TCF4-222	ENST00000564228	DOT1L	Q8TEK3	1739 aa		13.39	□□□□□ -0.27
TCF4-222	ENST00000564228	ALDH1L2	Q3SY69	923 aa		13.39	□□□□□ -0.27
TCF4-222	ENST00000564228	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	13.39	□□□□□ -0.27
TCF4-222	ENST00000564228	GLI3	P10071	1580 aa		13.39	□□□□□ -0.27
TCF4-222	ENST00000564228	TULP1	O00294	542 aa	Predicted RBP	13.39	□□□□□ -0.27
TCF4-222	ENST00000564228	EIF4A1	P60842	406 aa	Known RBP	13.39	□□□□□ -0.27
TCF4-222	ENST00000564228	ARID3A	Q99856	593 aa		13.39	□□□□□ -0.27
TCF4-222	ENST00000564228	ERVV-2	B6SEH9	535 aa		13.38	□□□□□ -0.27
TCF4-222	ENST00000564228	TMEM57	Q8N5G2	664 aa		13.38	□□□□□ -0.27
TCF4-222	ENST00000564228	NECTIN2	Q92692	538 aa		13.38	□□□□□ -0.27
TCF4-222	ENST00000564228	RBM42	Q9BTD8	480 aa	Known RBP	13.38	□□□□□ -0.27
TCF4-222	ENST00000564228	TMEM63C	Q9P1W3	806 aa		13.38	□□□□□ -0.27
TCF4-222	ENST00000564228	KIF3A	Q9Y496	699 aa		13.38	□□□□□ -0.27
TCF4-222	ENST00000564228	PTMA	P06454	111 aa	Known RBP	13.37	□□□□□ -0.27
TCF4-222	ENST00000564228	GTF2E1	P29083	439 aa	Predicted RBP	13.37	□□□□□ -0.27
TCF4-222	ENST00000564228	HOXD11	P31277	338 aa	Predicted RBP	13.37	□□□□□ -0.27
TCF4-222	ENST00000564228	UVSSA	Q2YD98	709 aa		13.37	□□□□□ -0.27
TCF4-222	ENST00000564228	ZNF790	Q6PG37	636 aa		13.37	□□□□□ -0.27
TCF4-222	ENST00000564228	BBX	Q8WY36	941 aa	Predicted RBP	13.37	□□□□□ -0.27
TCF4-222	ENST00000564228	GJD4	Q96KN9	370 aa	Predicted RBP	13.37	□□□□□ -0.27
TCF4-222	ENST00000564228	SPTLC3	Q9NUV7	552 aa		13.37	□□□□□ -0.27
TCF4-222	ENST00000564228	FBXO3	Q9UK99	471 aa		13.37	□□□□□ -0.27
TCF4-222	ENST00000564228	C5	P01031	1676 aa		13.37	□□□□□ -0.27
TCF4-222	ENST00000564228	PRPF40A	O75400	957 aa	Known RBP	13.37	□□□□□ -0.27
TCF4-222	ENST00000564228	TTC5	Q8N0Z6	440 aa		13.37	□□□□□ -0.27
TCF4-222	ENST00000564228	FBXO41	Q8TF61	875 aa		13.37	□□□□□ -0.27
TCF4-222	ENST00000564228	TRPC5	Q9UL62	973 aa	Predicted RBP	13.37	□□□□□ -0.27
TCF4-222	ENST00000564228	NOB1	Q9ULX3	412 aa	Known RBP	13.37	□□□□□ -0.27
TCF4-222	ENST00000564228	ATF5	Q9Y2D1	282 aa	Predicted RBP	13.37	□□□□□ -0.27
TCF4-222	ENST00000564228	THSD7A	Q9UPZ6	1657 aa		13.36	□□□□□ -0.27
TCF4-222	ENST00000564228	SYCE3	A1L190	88 aa		13.36	□□□□□ -0.27
TCF4-222	ENST00000564228	DNTTIP2	Q5QJE6	756 aa	Known RBP	13.36	□□□□□ -0.27
TCF4-222	ENST00000564228	MRPL50	Q8N5N7	158 aa	Known RBP	13.36	□□□□□ -0.27
TCF4-222	ENST00000564228	FAM184A	Q8NB25	1140 aa		13.36	□□□□□ -0.27
TCF4-222	ENST00000564228	SYAP1	Q96A49	352 aa	Predicted RBP	13.36	□□□□□ -0.27
TCF4-222	ENST00000564228	TSPY26P	Q9H489	355 aa		13.36	□□□□□ -0.27
TCF4-222	ENST00000564228	TMOD3	Q9NYL9	352 aa		13.36	□□□□□ -0.27
TCF4-222	ENST00000564228	RBM27	Q9P2N5	1060 aa	Known RBP	13.36	□□□□□ -0.27
TCF4-222	ENST00000564228	ATRN	O75882	1429 aa		13.36	□□□□□ -0.27
TCF4-222	ENST00000564228	PAPPA	Q13219	1627 aa		13.36	□□□□□ -0.27
TCF4-222	ENST00000564228	UBR2	Q8IWV8	1755 aa		13.35	□□□□□ -0.27
TCF4-222	ENST00000564228	EIF2S2	P20042	333 aa	Known RBP	13.35	□□□□□ -0.27
TCF4-222	ENST00000564228	BRPF1	P55201	1214 aa	Predicted RBP	13.35	□□□□□ -0.27
TCF4-222	ENST00000564228	CBX1	P83916	185 aa		13.35	□□□□□ -0.27
TCF4-222	ENST00000564228	FKBP5	Q13451	457 aa	Predicted RBP	13.35	□□□□□ -0.27
TCF4-222	ENST00000564228	MARCH10	Q8NA82	808 aa	Predicted RBP	13.35	□□□□□ -0.27
TCF4-222	ENST00000564228	SYTL4	Q96C24	671 aa	Predicted RBP	13.35	□□□□□ -0.27
TCF4-222	ENST00000564228	PHF14	O94880	888 aa		13.35	□□□□□ -0.27
TCF4-222	ENST00000564228	NOLC1	Q14978	699 aa	Known RBP eCLIP	13.35	□□□□□ -0.27
TCF4-222	ENST00000564228	HDGFL1	Q5TGJ6	251 aa		13.35	□□□□□ -0.27
TCF4-222	ENST00000564228	KLHL34	Q8N239	644 aa		13.35	□□□□□ -0.27
TCF4-222	ENST00000564228	QTRT2	Q9H974	415 aa	Known RBP	13.35	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms