RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 ARAFP10398 606 aa8.44□□□□□ -1.06
VPS35-205ENST00000563984 FGFR3P22607 806 aa8.44□□□□□ -1.06
VPS35-205ENST00000563984 CHSY3Q70JA7 882 aa8.44□□□□□ -1.06
VPS35-205ENST00000563984 PGBD3Q8N328 593 aa8.44□□□□□ -1.06
VPS35-205ENST00000563984 TPCN2Q8NHX9 752 aa8.44□□□□□ -1.06
VPS35-205ENST00000563984 M0R2N6 131 aa8.43□□□□□ -1.06
VPS35-205ENST00000563984 BNIP3LO60238 219 aa8.43□□□□□ -1.06
VPS35-205ENST00000563984 PRSS36Q5K4E3 855 aa8.43□□□□□ -1.06
VPS35-205ENST00000563984 SIX5Q8N196 739 aa8.43□□□□□ -1.06
VPS35-205ENST00000563984 AIDAQ96BJ3 306 aa8.43□□□□□ -1.06
VPS35-205ENST00000563984 KRTAP4-7Q9BYR0 210 aa8.43□□□□□ -1.06
VPS35-205ENST00000563984 IQSEC3Q9UPP2 1182 aaPredicted RBP8.43□□□□□ -1.06
VPS35-205ENST00000563984 KIAA1024Q9UPX6 916 aa8.43□□□□□ -1.06
VPS35-205ENST00000563984 RBM19Q9Y4C8 960 aaKnown RBP8.43□□□□□ -1.06
VPS35-205ENST00000563984 USP3Q9Y6I4 520 aa8.43□□□□□ -1.06
VPS35-205ENST00000563984 SPATA31C1P0DKV0 1188 aa8.42□□□□□ -1.06
VPS35-205ENST00000563984 RASA1P20936 1047 aa8.42□□□□□ -1.06
VPS35-205ENST00000563984 LMOD1P29536 600 aaPredicted RBP8.42□□□□□ -1.06
VPS35-205ENST00000563984 C1orf216Q8TAB5 229 aa8.42□□□□□ -1.06
VPS35-205ENST00000563984 PLVAPQ9BX97 442 aa8.42□□□□□ -1.06
VPS35-205ENST00000563984 SCHIP1Q9P0W5 487 aaPredicted RBP8.42□□□□□ -1.06
VPS35-205ENST00000563984 RANGAP1P46060 587 aaPredicted RBP8.41□□□□□ -1.06
VPS35-205ENST00000563984 ZNF295-AS1Q8N0V1 137 aa8.41□□□□□ -1.06
VPS35-205ENST00000563984 VRTNQ9H8Y1 702 aa8.41□□□□□ -1.06
VPS35-205ENST00000563984 CABP1Q9NZU7 370 aa8.41□□□□□ -1.06
VPS35-205ENST00000563984 EPHA4P54764 986 aa8.4□□□□□ -1.06
VPS35-205ENST00000563984 EFHC2Q5JST6 749 aa8.4□□□□□ -1.06
VPS35-205ENST00000563984 KANK4Q5T7N3 995 aaPredicted RBP8.4□□□□□ -1.06
VPS35-205ENST00000563984 LARP1Q6PKG0 1096 aaKnown RBP8.4□□□□□ -1.06
VPS35-205ENST00000563984 KLF15Q9UIH9 416 aa8.4□□□□□ -1.06
VPS35-205ENST00000563984 DKK1O94907 266 aa8.39□□□□□ -1.07
VPS35-205ENST00000563984 NBPF1Q3BBV0 1214 aa8.39□□□□□ -1.07
VPS35-205ENST00000563984 CFAP70Q5T0N1 1121 aa8.39□□□□□ -1.07
VPS35-205ENST00000563984 TNS4Q8IZW8 715 aa8.39□□□□□ -1.07
VPS35-205ENST00000563984 ZNF594Q96JF6 807 aaPredicted RBP8.39□□□□□ -1.07
VPS35-205ENST00000563984 CRISPLD1Q9H336 500 aa8.39□□□□□ -1.07
VPS35-205ENST00000563984 PARP3Q9Y6F1 533 aa8.39□□□□□ -1.07
VPS35-205ENST00000563984 FAM196BA6NMK8 535 aa8.38□□□□□ -1.07
VPS35-205ENST00000563984 ATP4AP20648 1035 aa8.38□□□□□ -1.07
VPS35-205ENST00000563984 SEC13P55735 322 aa8.38□□□□□ -1.07
VPS35-205ENST00000563984 LRP8Q14114 963 aa8.38□□□□□ -1.07
VPS35-205ENST00000563984 TEAD4Q15561 434 aa8.38□□□□□ -1.07
VPS35-205ENST00000563984 ZDHHC3Q9NYG2 299 aa8.38□□□□□ -1.07
VPS35-205ENST00000563984 PTK7Q13308 1070 aa8.37□□□□□ -1.07
VPS35-205ENST00000563984 LCE1DQ5T752 114 aa8.37□□□□□ -1.07
VPS35-205ENST00000563984 SLC9A9Q8IVB4 645 aa8.37□□□□□ -1.07
VPS35-205ENST00000563984 SFI1A8K8P3 1242 aa8.36□□□□□ -1.07
VPS35-205ENST00000563984 HYAL3O43820 417 aaPredicted RBP8.36□□□□□ -1.07
VPS35-205ENST00000563984 TATP17735 454 aaPredicted RBP8.36□□□□□ -1.07
VPS35-205ENST00000563984 CRTC2Q53ET0 693 aaPredicted RBP8.36□□□□□ -1.07
VPS35-205ENST00000563984 ARSJQ5FYB0 599 aaPredicted RBP8.36□□□□□ -1.07
VPS35-205ENST00000563984 TBCELQ5QJ74 424 aa8.36□□□□□ -1.07
VPS35-205ENST00000563984 NLRP8Q86W28 1048 aa8.36□□□□□ -1.07
VPS35-205ENST00000563984 FCHSD1Q86WN1 690 aa8.36□□□□□ -1.07
VPS35-205ENST00000563984 ZCCHC2Q9C0B9 1178 aaKnown RBP8.36□□□□□ -1.07
VPS35-205ENST00000563984 DCDC2BA2VCK2 349 aa8.35□□□□□ -1.07
VPS35-205ENST00000563984 USP17L15C9J2P7 530 aa8.35□□□□□ -1.07
VPS35-205ENST00000563984 USP17L10C9JJH3 530 aa8.35□□□□□ -1.07
VPS35-205ENST00000563984 USP17L13C9JLJ4 530 aa8.35□□□□□ -1.07
VPS35-205ENST00000563984 USP17L12C9JPN9 530 aa8.35□□□□□ -1.07
VPS35-205ENST00000563984 USP17L11C9JVI0 530 aa8.35□□□□□ -1.07
VPS35-205ENST00000563984 USP17L21D6R901 530 aa8.35□□□□□ -1.07
VPS35-205ENST00000563984 USP17L18D6R9N7 530 aa8.35□□□□□ -1.07
VPS35-205ENST00000563984 USP17L22D6RA61 530 aa8.35□□□□□ -1.07
VPS35-205ENST00000563984 USP17L17D6RBQ6 530 aa8.35□□□□□ -1.07
VPS35-205ENST00000563984 USP17L19D6RCP7 530 aa8.35□□□□□ -1.07
VPS35-205ENST00000563984 USP17L20D6RJB6 530 aa8.35□□□□□ -1.07
VPS35-205ENST00000563984 NOS2P35228 1153 aa8.35□□□□□ -1.07
VPS35-205ENST00000563984 USP17L24Q0WX57 530 aa8.35□□□□□ -1.07
VPS35-205ENST00000563984 L3MBTL2Q969R5 705 aa8.35□□□□□ -1.07
VPS35-205ENST00000563984 HCN2Q9UL51 889 aa8.35□□□□□ -1.07
VPS35-205ENST00000563984 CHMP3Q9Y3E7 222 aa8.35□□□□□ -1.07
VPS35-205ENST00000563984 A0A1W2PNR3 127 aa8.34□□□□□ -1.07
VPS35-205ENST00000563984 SERTM1A2A2V5 107 aa8.34□□□□□ -1.07
VPS35-205ENST00000563984 PSMA6P60900 246 aaKnown RBP8.34□□□□□ -1.07
VPS35-205ENST00000563984 FIGNL1Q6PIW4 674 aa8.34□□□□□ -1.07
VPS35-205ENST00000563984 ANKMY2Q8IV38 441 aa8.34□□□□□ -1.07
VPS35-205ENST00000563984 TSEN2Q8NCE0 465 aaKnown RBP8.34□□□□□ -1.07
VPS35-205ENST00000563984 GAS2L2Q8NHY3 880 aa8.34□□□□□ -1.07
VPS35-205ENST00000563984 ZDHHC1Q8WTX9 485 aa8.34□□□□□ -1.07
VPS35-205ENST00000563984 ADH6P28332 368 aa8.33□□□□□ -1.08
VPS35-205ENST00000563984 TXLNAP40222 546 aa8.33□□□□□ -1.08
VPS35-205ENST00000563984 DPYDQ12882 1025 aa8.33□□□□□ -1.08
VPS35-205ENST00000563984 TSPAN10Q9H1Z9 355 aaPredicted RBP8.33□□□□□ -1.08
VPS35-205ENST00000563984 ZNF232Q9UNY5 417 aa8.33□□□□□ -1.08
VPS35-205ENST00000563984 KHNYNO15037 678 aaKnown RBP8.32□□□□□ -1.08
VPS35-205ENST00000563984 ATXN7O15265 892 aaPredicted RBP8.32□□□□□ -1.08
VPS35-205ENST00000563984 RFX1P22670 979 aa8.32□□□□□ -1.08
VPS35-205ENST00000563984 STAG2Q8N3U4 1231 aa8.32□□□□□ -1.08
VPS35-205ENST00000563984 ZIC5Q96T25 663 aa8.32□□□□□ -1.08
VPS35-205ENST00000563984 PCDHGC4Q9Y5F7 938 aa8.32□□□□□ -1.08
VPS35-205ENST00000563984 GPC6Q9Y625 555 aaPredicted RBP8.32□□□□□ -1.08
VPS35-205ENST00000563984 ATAD2Q6PL18 1390 aa8.32□□□□□ -1.08
VPS35-205ENST00000563984 EML1O00423 815 aa8.31□□□□□ -1.08
VPS35-205ENST00000563984 CD33P20138 364 aa8.31□□□□□ -1.08
VPS35-205ENST00000563984 HIRAP54198 1017 aaPredicted RBP8.31□□□□□ -1.08
VPS35-205ENST00000563984 SH3PXD2AQ5TCZ1 1133 aa8.31□□□□□ -1.08
VPS35-205ENST00000563984 POTEAQ6S8J7 498 aa8.31□□□□□ -1.08
VPS35-205ENST00000563984 BICDL1Q6ZP65 573 aa8.31□□□□□ -1.08
VPS35-205ENST00000563984 CCDC97Q96F63 343 aaPredicted RBP8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms