RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 A1BGP04217 495 aa14.17□□□□□ -0.14
SF3B3-204ENST00000563739 HSPA8P11142 646 aaKnown RBP14.17□□□□□ -0.14
SF3B3-204ENST00000563739 STYK1Q6J9G0 422 aa14.17□□□□□ -0.14
SF3B3-204ENST00000563739 DPY19L2Q6NUT2 758 aa14.17□□□□□ -0.14
SF3B3-204ENST00000563739 LDHDQ86WU2 507 aa14.17□□□□□ -0.14
SF3B3-204ENST00000563739 TNRC18O15417 2968 aaPredicted RBP14.16□□□□□ -0.14
SF3B3-204ENST00000563739 PDE6BP35913 854 aa14.16□□□□□ -0.14
SF3B3-204ENST00000563739 IL6STP40189 918 aaPredicted RBP14.16□□□□□ -0.14
SF3B3-204ENST00000563739 ZNF790Q6PG37 636 aa14.16□□□□□ -0.14
SF3B3-204ENST00000563739 TRPM7Q96QT4 1865 aa14.16□□□□□ -0.14
SF3B3-204ENST00000563739 PRAMEF22A3QJZ6 481 aa14.15□□□□□ -0.14
SF3B3-204ENST00000563739 KLRG2A4D1S0 409 aaPredicted RBP14.15□□□□□ -0.14
SF3B3-204ENST00000563739 PIP4K2AP48426 406 aaPredicted RBP14.15□□□□□ -0.14
SF3B3-204ENST00000563739 TIMELESSQ9UNS1 1208 aa14.15□□□□□ -0.14
SF3B3-204ENST00000563739 PDZRN3Q9UPQ7 1066 aa14.15□□□□□ -0.14
SF3B3-204ENST00000563739 A0A087WZG4 1122 aa14.14□□□□□ -0.15
SF3B3-204ENST00000563739 RASSF10A6NK89 507 aa14.14□□□□□ -0.15
SF3B3-204ENST00000563739 CTCFP49711 727 aaPredicted RBP14.14□□□□□ -0.15
SF3B3-204ENST00000563739 LBX1P52954 281 aa14.14□□□□□ -0.15
SF3B3-204ENST00000563739 FMR1Q06787 632 aaKnown RBP eCLIP14.14□□□□□ -0.151e-6■□□□□ 10.6
SF3B3-204ENST00000563739 CNBD1Q8NA66 436 aa14.14□□□□□ -0.15
SF3B3-204ENST00000563739 ABCC12Q96J65 1359 aa14.13□□□□□ -0.15
SF3B3-204ENST00000563739 TMEM88BA6NKF7 163 aa14.13□□□□□ -0.15
SF3B3-204ENST00000563739 PER1O15534 1290 aaPredicted RBP14.13□□□□□ -0.15
SF3B3-204ENST00000563739 STARD3NLO95772 234 aa14.13□□□□□ -0.15
SF3B3-204ENST00000563739 CNKSR1Q969H4 720 aa14.13□□□□□ -0.15
SF3B3-204ENST00000563739 MASTLQ96GX5 879 aa14.13□□□□□ -0.15
SF3B3-204ENST00000563739 ZNF277Q9NRM2 450 aaPredicted RBP14.13□□□□□ -0.15
SF3B3-204ENST00000563739 NUP98P52948 1817 aa14.13□□□□□ -0.15
SF3B3-204ENST00000563739 EIF4G2P78344 907 aaKnown RBP eCLIP14.12□□□□□ -0.15
SF3B3-204ENST00000563739 ABHD8Q96I13 439 aa14.12□□□□□ -0.15
SF3B3-204ENST00000563739 RNF123Q5XPI4 1314 aa14.12□□□□□ -0.15
SF3B3-204ENST00000563739 KDM3BQ7LBC6 1761 aa14.11□□□□□ -0.15
SF3B3-204ENST00000563739 FZD9O00144 591 aa14.11□□□□□ -0.15
SF3B3-204ENST00000563739 FKBP4Q02790 459 aaKnown RBP eCLIP14.11□□□□□ -0.15
SF3B3-204ENST00000563739 CCDC93Q567U6 631 aa14.11□□□□□ -0.15
SF3B3-204ENST00000563739 MAP1SQ66K74 1059 aaPredicted RBP14.11□□□□□ -0.15
SF3B3-204ENST00000563739 ZNF330Q9Y3S2 320 aaPredicted RBP14.11□□□□□ -0.15
SF3B3-204ENST00000563739 USP16Q9Y5T5 823 aa14.11□□□□□ -0.15
SF3B3-204ENST00000563739 KIF7Q2M1P5 1343 aa14.11□□□□□ -0.15
SF3B3-204ENST00000563739 IQCA1LA6NCM1 817 aa14.1□□□□□ -0.15
SF3B3-204ENST00000563739 NBPF26B4DH59 902 aa14.1□□□□□ -0.15
SF3B3-204ENST00000563739 NBPF10Q6P3W6 841 aaKnown RBP14.1□□□□□ -0.15
SF3B3-204ENST00000563739 DZIP3Q86Y13 1208 aaKnown RBP14.1□□□□□ -0.15
SF3B3-204ENST00000563739 TTC5Q8N0Z6 440 aa14.1□□□□□ -0.15
SF3B3-204ENST00000563739 NBPF15Q8N660 670 aa14.1□□□□□ -0.15
SF3B3-204ENST00000563739 RIC1Q4ADV7 1423 aa14.09□□□□□ -0.15
SF3B3-204ENST00000563739 DIAPH1O60610 1272 aaKnown RBP14.09□□□□□ -0.15
SF3B3-204ENST00000563739 EPHX2P34913 555 aa14.09□□□□□ -0.15
SF3B3-204ENST00000563739 PHACTR3Q96KR7 559 aa14.09□□□□□ -0.15
SF3B3-204ENST00000563739 SETDB2Q96T68 719 aa14.09□□□□□ -0.15
SF3B3-204ENST00000563739 KNSTRNQ9Y448 316 aa14.09□□□□□ -0.15
SF3B3-204ENST00000563739 ST5P78524 1137 aa14.08□□□□□ -0.16
SF3B3-204ENST00000563739 EAPPQ56P03 285 aaPredicted RBP14.08□□□□□ -0.16
SF3B3-204ENST00000563739 SOGA3Q5TF21 947 aa14.08□□□□□ -0.16
SF3B3-204ENST00000563739 FMNL2Q96PY5 1086 aa14.08□□□□□ -0.16
SF3B3-204ENST00000563739 HACL1Q9UJ83 578 aa14.08□□□□□ -0.16
SF3B3-204ENST00000563739 LAMB2P55268 1798 aa14.08□□□□□ -0.16
SF3B3-204ENST00000563739 WDR33Q9C0J8 1336 aaKnown RBP14.08□□□□□ -0.16
SF3B3-204ENST00000563739 DLG5Q8TDM6 1919 aa14.07□□□□□ -0.16
SF3B3-204ENST00000563739 GNAT3A8MTJ3 354 aa14.07□□□□□ -0.16
SF3B3-204ENST00000563739 NPR1P16066 1061 aa14.07□□□□□ -0.16
SF3B3-204ENST00000563739 TEX13AQ9BXU3 409 aaPredicted RBP14.07□□□□□ -0.16
SF3B3-204ENST00000563739 IARSP41252 1262 aaKnown RBP14.06□□□□□ -0.16
SF3B3-204ENST00000563739 SCNN1DP51172 638 aa14.06□□□□□ -0.16
SF3B3-204ENST00000563739 TEFQ10587 303 aa14.06□□□□□ -0.16
SF3B3-204ENST00000563739 HLFQ16534 295 aa14.06□□□□□ -0.16
SF3B3-204ENST00000563739 CNTROBQ8N137 903 aa14.06□□□□□ -0.16
SF3B3-204ENST00000563739 CLSPNQ9HAW4 1339 aa14.06□□□□□ -0.16
SF3B3-204ENST00000563739 RGS19P49795 217 aa14.05□□□□□ -0.16
SF3B3-204ENST00000563739 DEFB115Q30KQ5 88 aa14.05□□□□□ -0.16
SF3B3-204ENST00000563739 CRY2Q49AN0 593 aa14.05□□□□□ -0.16
SF3B3-204ENST00000563739 CLEC4GQ6UXB4 293 aa14.05□□□□□ -0.16
SF3B3-204ENST00000563739 NBPF5PQ86XG9 351 aaPredicted RBP14.05□□□□□ -0.16
SF3B3-204ENST00000563739 AIDAQ96BJ3 306 aa14.05□□□□□ -0.16
SF3B3-204ENST00000563739 RSPH6AQ9H0K4 717 aa14.05□□□□□ -0.16
SF3B3-204ENST00000563739 DDX21Q9NR30 783 aaKnown RBP eCLIP14.05□□□□□ -0.16
SF3B3-204ENST00000563739 NPC1L1Q9UHC9 1359 aa14.05□□□□□ -0.16
SF3B3-204ENST00000563739 CASP8AP2Q9UKL3 1982 aa14.05□□□□□ -0.16
SF3B3-204ENST00000563739 CST9Q5W186 159 aa14.04□□□□□ -0.16
SF3B3-204ENST00000563739 GPC2Q8N158 579 aa14.04□□□□□ -0.16
SF3B3-204ENST00000563739 SYNE4Q8N205 404 aa14.04□□□□□ -0.16
SF3B3-204ENST00000563739 GAS2L2Q8NHY3 880 aa14.04□□□□□ -0.16
SF3B3-204ENST00000563739 DUOX1Q9NRD9 1551 aa14.04□□□□□ -0.16
SF3B3-204ENST00000563739 TRAF5O00463 557 aa14.03□□□□□ -0.16
SF3B3-204ENST00000563739 EPS15P42566 896 aa14.03□□□□□ -0.16
SF3B3-204ENST00000563739 CC2D1BQ5T0F9 858 aaKnown RBP14.03□□□□□ -0.16
SF3B3-204ENST00000563739 C3orf67Q6ZVT6 689 aa14.03□□□□□ -0.16
SF3B3-204ENST00000563739 PSMD1Q99460 953 aa14.03□□□□□ -0.16
SF3B3-204ENST00000563739 COL4A1P02462 1669 aa14.02□□□□□ -0.16
SF3B3-204ENST00000563739 UBN2Q6ZU65 1347 aa14.02□□□□□ -0.17
SF3B3-204ENST00000563739 RGL2O15211 777 aa14.02□□□□□ -0.17
SF3B3-204ENST00000563739 CYP4F22Q6NT55 531 aa14.02□□□□□ -0.17
SF3B3-204ENST00000563739 PPP4R3CPQ6ZMV5 832 aa14.02□□□□□ -0.17
SF3B3-204ENST00000563739 CAPNS2Q96L46 248 aa14.02□□□□□ -0.17
SF3B3-204ENST00000563739 NIP7Q9Y221 180 aaKnown RBP eCLIP14.02□□□□□ -0.17
SF3B3-204ENST00000563739 BTBD11A6QL63 1104 aa14.01□□□□□ -0.17
SF3B3-204ENST00000563739 PRKAR2BP31323 418 aa14.01□□□□□ -0.17
SF3B3-204ENST00000563739 TRIM26Q12899 539 aaPredicted RBP14.01□□□□□ -0.17
SF3B3-204ENST00000563739 PNMA8AQ86V59 439 aaPredicted RBP14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms