RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 SRGNP10124 158 aa20.88■□□□□ 0.93
CLK3-211ENST00000563297 ST5P78524 1137 aa20.88■□□□□ 0.93
CLK3-211ENST00000563297 DNAJC5GQ8N7S2 189 aa20.88■□□□□ 0.93
CLK3-211ENST00000563297 FSTL1Q12841 308 aa20.87■□□□□ 0.93
CLK3-211ENST00000563297 STYK1Q6J9G0 422 aa20.87■□□□□ 0.93
CLK3-211ENST00000563297 NBPF5PQ86XG9 351 aaPredicted RBP20.87■□□□□ 0.93
CLK3-211ENST00000563297 CNKSR1Q969H4 720 aa20.87■□□□□ 0.93
CLK3-211ENST00000563297 ZNF652Q9Y2D9 606 aa20.87■□□□□ 0.93
CLK3-211ENST00000563297 COL11A2P13942 1736 aaPredicted RBP20.87■□□□□ 0.93
CLK3-211ENST00000563297 SLX4Q8IY92 1834 aa20.86■□□□□ 0.93
CLK3-211ENST00000563297 RGL2O15211 777 aa20.86■□□□□ 0.93
CLK3-211ENST00000563297 NFE2L2Q16236 605 aa20.86■□□□□ 0.93
CLK3-211ENST00000563297 PNISRQ8TF01 805 aaKnown RBP20.86■□□□□ 0.93
CLK3-211ENST00000563297 MASTLQ96GX5 879 aa20.85■□□□□ 0.93
CLK3-211ENST00000563297 NIP7Q9Y221 180 aaKnown RBP eCLIP20.85■□□□□ 0.93
CLK3-211ENST00000563297 FER1L6Q2WGJ9 1857 aa20.85■□□□□ 0.93
CLK3-211ENST00000563297 TNRC6CQ9HCJ0 1690 aaKnown RBP20.84■□□□□ 0.93
CLK3-211ENST00000563297 VEGFAP15692 232 aaPredicted RBP20.84■□□□□ 0.93
CLK3-211ENST00000563297 EIF4A1P60842 406 aaKnown RBP20.84■□□□□ 0.93
CLK3-211ENST00000563297 HLFQ16534 295 aa20.84■□□□□ 0.93
CLK3-211ENST00000563297 TPTE2Q6XPS3 522 aa20.84■□□□□ 0.93
CLK3-211ENST00000563297 THUMPD2Q9BTF0 503 aaKnown RBP20.84■□□□□ 0.93
CLK3-211ENST00000563297 PNNQ9H307 717 aaKnown RBP20.84■□□□□ 0.93
CLK3-211ENST00000563297 PRPF40BQ6NWY9 871 aaKnown RBP20.83■□□□□ 0.93
CLK3-211ENST00000563297 KLRG2A4D1S0 409 aaPredicted RBP20.82■□□□□ 0.92
CLK3-211ENST00000563297 ERFEQ4G0M1 354 aa20.82■□□□□ 0.92
CLK3-211ENST00000563297 DPY19L2Q6NUT2 758 aa20.82■□□□□ 0.92
CLK3-211ENST00000563297 C7orf43Q8WVR3 580 aa20.82■□□□□ 0.92
CLK3-211ENST00000563297 DICER1Q9UPY3 1922 aaKnown RBP20.82■□□□□ 0.92
CLK3-211ENST00000563297 LTBP3Q9NS15 1303 aa20.81■□□□□ 0.92
CLK3-211ENST00000563297 POTECB2RU33 542 aa20.81■□□□□ 0.92
CLK3-211ENST00000563297 HTRA3P83110 453 aa20.81■□□□□ 0.92
CLK3-211ENST00000563297 NGEFQ8N5V2 710 aa20.81■□□□□ 0.92
CLK3-211ENST00000563297 SMC1BQ8NDV3 1235 aa20.81■□□□□ 0.92
CLK3-211ENST00000563297 CACNA1SQ13698 1873 aa20.81■□□□□ 0.92
CLK3-211ENST00000563297 KDM3BQ7LBC6 1761 aa20.8■□□□□ 0.92
CLK3-211ENST00000563297 FAM177BA6PVY3 158 aa20.8■□□□□ 0.92
CLK3-211ENST00000563297 NPR1P16066 1061 aa20.8■□□□□ 0.92
CLK3-211ENST00000563297 TAOK3Q9H2K8 898 aa20.8■□□□□ 0.92
CLK3-211ENST00000563297 RRP7AQ9Y3A4 280 aaKnown RBP20.8■□□□□ 0.92
CLK3-211ENST00000563297 MAPK8IP3Q9UPT6 1336 aa20.79■□□□□ 0.92
CLK3-211ENST00000563297 TIAM2Q8IVF5 1701 aa20.79■□□□□ 0.92
CLK3-211ENST00000563297 RALBP1Q15311 655 aa20.79■□□□□ 0.92
CLK3-211ENST00000563297 SOGA3Q5TF21 947 aa20.79■□□□□ 0.92
CLK3-211ENST00000563297 ERVV-1B6SEH8 477 aa20.78■□□□□ 0.92
CLK3-211ENST00000563297 WDR90Q96KV7 1748 aa20.78■□□□□ 0.92
CLK3-211ENST00000563297 LAMB4A4D0S4 1761 aa20.77■□□□□ 0.92
CLK3-211ENST00000563297 IFFO2Q5TF58 517 aa20.77■□□□□ 0.92
CLK3-211ENST00000563297 TTLL7Q6ZT98 887 aa20.77■□□□□ 0.92
CLK3-211ENST00000563297 ARFGEF2Q9Y6D5 1785 aa20.77■□□□□ 0.91
CLK3-211ENST00000563297 MAP3K15Q6ZN16 1313 aa20.77■□□□□ 0.91
CLK3-211ENST00000563297 NUP98P52948 1817 aa20.76■□□□□ 0.91
CLK3-211ENST00000563297 MYL6BP14649 208 aa20.76■□□□□ 0.91
CLK3-211ENST00000563297 RIPK4P57078 832 aa20.76■□□□□ 0.91
CLK3-211ENST00000563297 GTF2E1P29083 439 aaPredicted RBP20.75■□□□□ 0.91
CLK3-211ENST00000563297 DDX10Q13206 875 aaKnown RBP20.75■□□□□ 0.91
CLK3-211ENST00000563297 DDNO94850 711 aaPredicted RBP20.74■□□□□ 0.91
CLK3-211ENST00000563297 CCDC93Q567U6 631 aa20.74■□□□□ 0.91
CLK3-211ENST00000563297 KLRG1Q96E93 195 aa20.74■□□□□ 0.91
CLK3-211ENST00000563297 NYXQ9GZU5 481 aa20.74■□□□□ 0.91
CLK3-211ENST00000563297 ALDH1B1P30837 517 aa20.73■□□□□ 0.91
CLK3-211ENST00000563297 TMPOP42166 694 aaKnown RBP20.73■□□□□ 0.91
CLK3-211ENST00000563297 OLFM4Q6UX06 510 aa20.73■□□□□ 0.91
CLK3-211ENST00000563297 KIF6Q6ZMV9 814 aa20.73■□□□□ 0.91
CLK3-211ENST00000563297 NUTM1Q86Y26 1132 aa20.73■□□□□ 0.91
CLK3-211ENST00000563297 TSPYL4Q9UJ04 414 aa20.73■□□□□ 0.91
CLK3-211ENST00000563297 FKBP4Q02790 459 aaKnown RBP eCLIP20.72■□□□□ 0.91
CLK3-211ENST00000563297 ZBTB3Q9H5J0 574 aa20.72■□□□□ 0.91
CLK3-211ENST00000563297 GPTP24298 496 aa20.71■□□□□ 0.91
CLK3-211ENST00000563297 CRY2Q49AN0 593 aa20.71■□□□□ 0.91
CLK3-211ENST00000563297 BABAM1Q9NWV8 329 aa20.71■□□□□ 0.91
CLK3-211ENST00000563297 ERBB4Q15303 1308 aa20.71■□□□□ 0.91
CLK3-211ENST00000563297 EIF2S2P20042 333 aaKnown RBP20.7■□□□□ 0.9
CLK3-211ENST00000563297 PDIA6Q15084 440 aa20.7■□□□□ 0.9
CLK3-211ENST00000563297 SUSD4Q5VX71 490 aa20.7■□□□□ 0.9
CLK3-211ENST00000563297 GIGYF2Q6Y7W6 1299 aaKnown RBP20.7■□□□□ 0.9
CLK3-211ENST00000563297 LRP10Q7Z4F1 713 aa20.7■□□□□ 0.9
CLK3-211ENST00000563297 ZNF34Q8IZ26 560 aa20.7■□□□□ 0.9
CLK3-211ENST00000563297 RTKN2Q8IZC4 609 aa20.7■□□□□ 0.9
CLK3-211ENST00000563297 JMYQ8N9B5 988 aa20.7■□□□□ 0.9
CLK3-211ENST00000563297 ZNF277Q9NRM2 450 aaPredicted RBP20.7■□□□□ 0.9
CLK3-211ENST00000563297 UBN2Q6ZU65 1347 aa20.7■□□□□ 0.9
CLK3-211ENST00000563297 ABCC12Q96J65 1359 aa20.7■□□□□ 0.9
CLK3-211ENST00000563297 SYNE4Q8N205 404 aa20.68■□□□□ 0.9
CLK3-211ENST00000563297 MYBBP1AQ9BQG0 1328 aaKnown RBP20.68■□□□□ 0.9
CLK3-211ENST00000563297 HOXA10P31260 410 aaPredicted RBP20.67■□□□□ 0.9
CLK3-211ENST00000563297 LMOD3Q0VAK6 560 aa20.67■□□□□ 0.9
CLK3-211ENST00000563297 NTSR2O95665 410 aa20.66■□□□□ 0.9
CLK3-211ENST00000563297 POTEIP0CG38 1075 aa20.66■□□□□ 0.9
CLK3-211ENST00000563297 POTEJP0CG39 1038 aa20.66■□□□□ 0.9
CLK3-211ENST00000563297 NEUROD2Q15784 382 aa20.66■□□□□ 0.9
CLK3-211ENST00000563297 PROSER3Q2NL68 480 aa20.66■□□□□ 0.9
CLK3-211ENST00000563297 CCDC146Q8IYE0 955 aa20.66■□□□□ 0.9
CLK3-211ENST00000563297 IBTKQ9P2D0 1353 aaPredicted RBP20.66■□□□□ 0.9
CLK3-211ENST00000563297 ANXA1P04083 346 aa20.65■□□□□ 0.9
CLK3-211ENST00000563297 CHADLQ6NUI6 762 aa20.65■□□□□ 0.9
CLK3-211ENST00000563297 PPP1R42Q7Z4L9 355 aa20.65■□□□□ 0.9
CLK3-211ENST00000563297 L3MBTL3Q96JM7 780 aaPredicted RBP20.65■□□□□ 0.9
CLK3-211ENST00000563297 CHL1O00533 1208 aa20.64■□□□□ 0.89
CLK3-211ENST00000563297 IARSP41252 1262 aaKnown RBP20.64■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms