RNA–Protein interactions for RNA: ENST00000562874.2

SF3B3-203, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 401 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-203ENST00000562874 KIF3CO14782 793 aa20.75■□□□□ 0.91
SF3B3-203ENST00000562874 RIPK4P57078 832 aa20.75■□□□□ 0.91
SF3B3-203ENST00000562874 EIF4A1P60842 406 aaKnown RBP20.75■□□□□ 0.91
SF3B3-203ENST00000562874 NGEFQ8N5V2 710 aa20.75■□□□□ 0.91
SF3B3-203ENST00000562874 TTLL6Q8N841 843 aa20.75■□□□□ 0.91
SF3B3-203ENST00000562874 ZNF622Q969S3 477 aaKnown RBP eCLIP20.75■□□□□ 0.91
SF3B3-203ENST00000562874 ZNF219Q9P2Y4 722 aaPredicted RBP20.75■□□□□ 0.91
SF3B3-203ENST00000562874 NMRK2Q9NPI5 230 aa20.74■□□□□ 0.91
SF3B3-203ENST00000562874 ZNF652Q9Y2D9 606 aa20.74■□□□□ 0.91
SF3B3-203ENST00000562874 FAM177BA6PVY3 158 aa20.73■□□□□ 0.91
SF3B3-203ENST00000562874 TMPOP42166 694 aaKnown RBP20.73■□□□□ 0.91
SF3B3-203ENST00000562874 ST5P78524 1137 aa20.73■□□□□ 0.91
SF3B3-203ENST00000562874 NEUROD2Q15784 382 aa20.73■□□□□ 0.91
SF3B3-203ENST00000562874 BRIP1Q9BX63 1249 aa20.73■□□□□ 0.91
SF3B3-203ENST00000562874 TSPYL4Q9UJ04 414 aa20.73■□□□□ 0.91
SF3B3-203ENST00000562874 WDR90Q96KV7 1748 aa20.73■□□□□ 0.91
SF3B3-203ENST00000562874 MYL6BP14649 208 aa20.72■□□□□ 0.91
SF3B3-203ENST00000562874 PDE6BP35913 854 aa20.72■□□□□ 0.91
SF3B3-203ENST00000562874 PRELPP51888 382 aa20.72■□□□□ 0.91
SF3B3-203ENST00000562874 HLFQ16534 295 aa20.72■□□□□ 0.91
SF3B3-203ENST00000562874 NBPF5PQ86XG9 351 aaPredicted RBP20.72■□□□□ 0.91
SF3B3-203ENST00000562874 NIP7Q9Y221 180 aaKnown RBP eCLIP20.72■□□□□ 0.91
SF3B3-203ENST00000562874 WDR43Q15061 677 aaKnown RBP eCLIP20.71■□□□□ 0.91
SF3B3-203ENST00000562874 NFKBIEO00221 500 aa20.7■□□□□ 0.9
SF3B3-203ENST00000562874 CLEC4GQ6UXB4 293 aa20.7■□□□□ 0.9
SF3B3-203ENST00000562874 TTLL7Q6ZT98 887 aa20.7■□□□□ 0.9
SF3B3-203ENST00000562874 PRKRIP1Q9H875 184 aaPredicted RBP20.7■□□□□ 0.9
SF3B3-203ENST00000562874 ABCC12Q96J65 1359 aa20.69■□□□□ 0.9
SF3B3-203ENST00000562874 C21orf2O43822 256 aa20.68■□□□□ 0.9
SF3B3-203ENST00000562874 ZBTB3Q9H5J0 574 aa20.68■□□□□ 0.9
SF3B3-203ENST00000562874 TAF1P21675 1872 aa20.68■□□□□ 0.9
SF3B3-203ENST00000562874 LMOD3Q0VAK6 560 aa20.67■□□□□ 0.9
SF3B3-203ENST00000562874 MAP3K15Q6ZN16 1313 aa20.67■□□□□ 0.9
SF3B3-203ENST00000562874 ANXA1P04083 346 aa20.66■□□□□ 0.9
SF3B3-203ENST00000562874 SRGNP10124 158 aa20.66■□□□□ 0.9
SF3B3-203ENST00000562874 EIF2S2P20042 333 aaKnown RBP20.66■□□□□ 0.9
SF3B3-203ENST00000562874 PRPF40BQ6NWY9 871 aaKnown RBP20.66■□□□□ 0.9
SF3B3-203ENST00000562874 KIF6Q6ZMV9 814 aa20.66■□□□□ 0.9
SF3B3-203ENST00000562874 RUNDC1Q96C34 613 aa20.66■□□□□ 0.9
SF3B3-203ENST00000562874 ADAMTS8Q9UP79 889 aa20.66■□□□□ 0.9
SF3B3-203ENST00000562874 PDZRN3Q9UPQ7 1066 aa20.66■□□□□ 0.9
SF3B3-203ENST00000562874 DDX60Q8IY21 1712 aaKnown RBP20.65■□□□□ 0.9
SF3B3-203ENST00000562874 LMNB1P20700 586 aa20.65■□□□□ 0.9
SF3B3-203ENST00000562874 GPTP24298 496 aa20.65■□□□□ 0.9
SF3B3-203ENST00000562874 KRT24Q2M2I5 525 aa20.65■□□□□ 0.9
SF3B3-203ENST00000562874 NECTIN2Q92692 538 aa20.65■□□□□ 0.9
SF3B3-203ENST00000562874 UBN2Q6ZU65 1347 aa20.64■□□□□ 0.89
SF3B3-203ENST00000562874 PROSER3Q2NL68 480 aa20.64■□□□□ 0.89
SF3B3-203ENST00000562874 STYK1Q6J9G0 422 aa20.64■□□□□ 0.89
SF3B3-203ENST00000562874 NUTM1Q86Y26 1132 aa20.64■□□□□ 0.89
SF3B3-203ENST00000562874 MASTLQ96GX5 879 aa20.64■□□□□ 0.89
SF3B3-203ENST00000562874 TRIM35Q9UPQ4 493 aa20.64■□□□□ 0.89
SF3B3-203ENST00000562874 LAS1LQ9Y4W2 734 aaKnown RBP20.64■□□□□ 0.89
SF3B3-203ENST00000562874 KDM2BQ8NHM5 1336 aa20.63■□□□□ 0.89
SF3B3-203ENST00000562874 HSPA6P17066 643 aa20.63■□□□□ 0.89
SF3B3-203ENST00000562874 ERBB4Q15303 1308 aa20.62■□□□□ 0.89
SF3B3-203ENST00000562874 RGL2O15211 777 aa20.62■□□□□ 0.89
SF3B3-203ENST00000562874 TPTE2Q6XPS3 522 aa20.62■□□□□ 0.89
SF3B3-203ENST00000562874 CNKSR1Q969H4 720 aa20.62■□□□□ 0.89
SF3B3-203ENST00000562874 GTF2E1P29083 439 aaPredicted RBP20.61■□□□□ 0.89
SF3B3-203ENST00000562874 RRAGCQ9HB90 399 aa20.61■□□□□ 0.89
SF3B3-203ENST00000562874 ZC3H4Q9UPT8 1303 aaKnown RBP20.6■□□□□ 0.89
SF3B3-203ENST00000562874 ERVV-1B6SEH8 477 aa20.6■□□□□ 0.89
SF3B3-203ENST00000562874 TOMM70O94826 608 aa20.6■□□□□ 0.89
SF3B3-203ENST00000562874 PDIA6Q15084 440 aa20.6■□□□□ 0.89
SF3B3-203ENST00000562874 OLFM4Q6UX06 510 aa20.6■□□□□ 0.89
SF3B3-203ENST00000562874 LRP10Q7Z4F1 713 aa20.6■□□□□ 0.89
SF3B3-203ENST00000562874 TAOK3Q9H2K8 898 aa20.6■□□□□ 0.89
SF3B3-203ENST00000562874 NPR1P16066 1061 aa20.59■□□□□ 0.89
SF3B3-203ENST00000562874 ERFEQ4G0M1 354 aa20.59■□□□□ 0.89
SF3B3-203ENST00000562874 C16orf71Q8IYS4 520 aaPredicted RBP20.59■□□□□ 0.89
SF3B3-203ENST00000562874 IBTKQ9P2D0 1353 aaPredicted RBP20.59■□□□□ 0.89
SF3B3-203ENST00000562874 SCN4AP35499 1836 aa20.58■□□□□ 0.89
SF3B3-203ENST00000562874 BABAM1Q9NWV8 329 aa20.58■□□□□ 0.89
SF3B3-203ENST00000562874 CEP350Q5VT06 3117 aa20.58■□□□□ 0.88
SF3B3-203ENST00000562874 RIC1Q4ADV7 1423 aa20.57■□□□□ 0.88
SF3B3-203ENST00000562874 SUSD4Q5VX71 490 aa20.57■□□□□ 0.88
SF3B3-203ENST00000562874 GIGYF2Q6Y7W6 1299 aaKnown RBP20.57■□□□□ 0.88
SF3B3-203ENST00000562874 NYXQ9GZU5 481 aa20.57■□□□□ 0.88
SF3B3-203ENST00000562874 LTBP3Q9NS15 1303 aa20.56■□□□□ 0.88
SF3B3-203ENST00000562874 KLRG2A4D1S0 409 aaPredicted RBP20.56■□□□□ 0.88
SF3B3-203ENST00000562874 CHL1O00533 1208 aa20.56■□□□□ 0.88
SF3B3-203ENST00000562874 NTSR2O95665 410 aa20.56■□□□□ 0.88
SF3B3-203ENST00000562874 AIMP1Q12904 312 aaKnown RBP20.56■□□□□ 0.88
SF3B3-203ENST00000562874 GLTPD2A6NH11 291 aa20.55■□□□□ 0.88
SF3B3-203ENST00000562874 APAF1O14727 1248 aa20.55■□□□□ 0.88
SF3B3-203ENST00000562874 CCDC184Q52MB2 194 aa20.55■□□□□ 0.88
SF3B3-203ENST00000562874 CCDC93Q567U6 631 aa20.55■□□□□ 0.88
SF3B3-203ENST00000562874 SLC51AQ86UW1 340 aa20.55■□□□□ 0.88
SF3B3-203ENST00000562874 ZNF34Q8IZ26 560 aa20.55■□□□□ 0.88
SF3B3-203ENST00000562874 SOGA3Q5TF21 947 aa20.54■□□□□ 0.88
SF3B3-203ENST00000562874 RBM46Q8TBY0 533 aaKnown RBP20.54■□□□□ 0.88
SF3B3-203ENST00000562874 XAGE3Q8WTP9 111 aa20.54■□□□□ 0.88
SF3B3-203ENST00000562874 C7orf43Q8WVR3 580 aa20.54■□□□□ 0.88
SF3B3-203ENST00000562874 ZNF428Q96B54 188 aa20.54■□□□□ 0.88
SF3B3-203ENST00000562874 CHPF2Q9P2E5 772 aa20.54■□□□□ 0.88
SF3B3-203ENST00000562874 SNED1Q8TER0 1413 aa20.53■□□□□ 0.88
SF3B3-203ENST00000562874 SPEF2Q9C093 1822 aa20.53■□□□□ 0.88
SF3B3-203ENST00000562874 C3orf67Q6ZVT6 689 aa20.53■□□□□ 0.88
SF3B3-203ENST00000562874 COPS6Q7L5N1 327 aa20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms