RNA–Protein interactions for RNA: ENST00000560519.1

HERC1-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 3

Gene HERC1, Length 591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-209ENST00000560519 ADAMTSL1Q8N6G6 1762 aa12.91□□□□□ -0.34
HERC1-209ENST00000560519 PRPF40BQ6NWY9 871 aaKnown RBP12.9□□□□□ -0.34
HERC1-209ENST00000560519 DZIP3Q86Y13 1208 aaKnown RBP12.9□□□□□ -0.34
HERC1-209ENST00000560519 POTEDQ86YR6 584 aa12.9□□□□□ -0.34
HERC1-209ENST00000560519 MASTLQ96GX5 879 aa12.9□□□□□ -0.34
HERC1-209ENST00000560519 TBC1D2BQ9UPU7 963 aa12.9□□□□□ -0.34
HERC1-209ENST00000560519 DLG5Q8TDM6 1919 aa12.9□□□□□ -0.35
HERC1-209ENST00000560519 BTBD11A6QL63 1104 aa12.89□□□□□ -0.35
HERC1-209ENST00000560519 RGL2O15211 777 aa12.89□□□□□ -0.35
HERC1-209ENST00000560519 CAMTA2O94983 1202 aa12.89□□□□□ -0.35
HERC1-209ENST00000560519 IL17REQ8NFR9 667 aa12.89□□□□□ -0.35
HERC1-209ENST00000560519 CREBZFQ9NS37 354 aa12.89□□□□□ -0.35
HERC1-209ENST00000560519 SRGNP10124 158 aa12.88□□□□□ -0.35
HERC1-209ENST00000560519 CCDC93Q567U6 631 aa12.88□□□□□ -0.35
HERC1-209ENST00000560519 CHADLQ6NUI6 762 aa12.88□□□□□ -0.35
HERC1-209ENST00000560519 CLEC4GQ6UXB4 293 aa12.88□□□□□ -0.35
HERC1-209ENST00000560519 RTF1Q92541 710 aaKnown RBP12.88□□□□□ -0.35
HERC1-209ENST00000560519 NUDCQ9Y266 331 aa12.88□□□□□ -0.35
HERC1-209ENST00000560519 NUP98P52948 1817 aa12.88□□□□□ -0.35
HERC1-209ENST00000560519 NBPF5PQ86XG9 351 aaPredicted RBP12.87□□□□□ -0.35
HERC1-209ENST00000560519 ZNF219Q9P2Y4 722 aaPredicted RBP12.87□□□□□ -0.35
HERC1-209ENST00000560519 PCNTO95613 3336 aa12.86□□□□□ -0.35
HERC1-209ENST00000560519 POTECB2RU33 542 aa12.86□□□□□ -0.35
HERC1-209ENST00000560519 A1BGP04217 495 aa12.86□□□□□ -0.35
HERC1-209ENST00000560519 PRKAR2BP31323 418 aa12.86□□□□□ -0.35
HERC1-209ENST00000560519 LDHDQ86WU2 507 aa12.86□□□□□ -0.35
HERC1-209ENST00000560519 RSPH6AQ9H0K4 717 aa12.86□□□□□ -0.35
HERC1-209ENST00000560519 THSD7BQ9C0I4 1608 aa12.86□□□□□ -0.35
HERC1-209ENST00000560519 CNTNAP1P78357 1384 aa12.85□□□□□ -0.35
HERC1-209ENST00000560519 ANKRD36CQ5JPF3 1778 aa12.85□□□□□ -0.35
HERC1-209ENST00000560519 CAPN15O75808 1086 aa12.85□□□□□ -0.35
HERC1-209ENST00000560519 SNRPA1P09661 255 aaKnown RBP12.85□□□□□ -0.35
HERC1-209ENST00000560519 NPR1P16066 1061 aa12.85□□□□□ -0.35
HERC1-209ENST00000560519 L3MBTL3Q96JM7 780 aaPredicted RBP12.85□□□□□ -0.35
HERC1-209ENST00000560519 DDNO94850 711 aaPredicted RBP12.84□□□□□ -0.35
HERC1-209ENST00000560519 FKBP4Q02790 459 aaKnown RBP eCLIP12.84□□□□□ -0.35
HERC1-209ENST00000560519 TPTE2Q6XPS3 522 aa12.84□□□□□ -0.35
HERC1-209ENST00000560519 RTKN2Q8IZC4 609 aa12.84□□□□□ -0.35
HERC1-209ENST00000560519 CCDC24Q8N4L8 307 aa12.84□□□□□ -0.35
HERC1-209ENST00000560519 RIC1Q4ADV7 1423 aa12.84□□□□□ -0.35
HERC1-209ENST00000560519 HTATSF1O43719 755 aaKnown RBP12.83□□□□□ -0.36
HERC1-209ENST00000560519 IBTKQ9P2D0 1353 aaPredicted RBP12.82□□□□□ -0.36
HERC1-209ENST00000560519 NEFMP07197 916 aa12.82□□□□□ -0.36
HERC1-209ENST00000560519 ALDH1B1P30837 517 aa12.82□□□□□ -0.36
HERC1-209ENST00000560519 AIDAQ96BJ3 306 aa12.82□□□□□ -0.36
HERC1-209ENST00000560519 TAF1DQ9H5J8 278 aaPredicted RBP12.82□□□□□ -0.36
HERC1-209ENST00000560519 MKRN1Q9UHC7 482 aaKnown RBP12.82□□□□□ -0.36
HERC1-209ENST00000560519 NIP7Q9Y221 180 aaKnown RBP eCLIP12.82□□□□□ -0.36
HERC1-209ENST00000560519 TRPM7Q96QT4 1865 aa12.82□□□□□ -0.36
HERC1-209ENST00000560519 PASKQ96RG2 1323 aa12.82□□□□□ -0.36
HERC1-209ENST00000560519 U2AF1L5P0DN76 240 aaPredicted RBP12.81□□□□□ -0.36
HERC1-209ENST00000560519 GTF2E1P29083 439 aaPredicted RBP12.81□□□□□ -0.36
HERC1-209ENST00000560519 U2AF1Q01081 240 aaKnown RBP eCLIP12.81□□□□□ -0.36
HERC1-209ENST00000560519 CNGB1Q14028 1251 aaPredicted RBP12.81□□□□□ -0.36
HERC1-209ENST00000560519 PNMA8AQ86V59 439 aaPredicted RBP12.81□□□□□ -0.36
HERC1-209ENST00000560519 PHACTR3Q96KR7 559 aa12.81□□□□□ -0.36
HERC1-209ENST00000560519 NYXQ9GZU5 481 aa12.81□□□□□ -0.36
HERC1-209ENST00000560519 HACL1Q9UJ83 578 aa12.81□□□□□ -0.36
HERC1-209ENST00000560519 USP16Q9Y5T5 823 aa12.81□□□□□ -0.36
HERC1-209ENST00000560519 KLRG2A4D1S0 409 aaPredicted RBP12.8□□□□□ -0.36
HERC1-209ENST00000560519 TMEM88BA6NKF7 163 aa12.8□□□□□ -0.36
HERC1-209ENST00000560519 KCNQ3O43525 872 aa12.8□□□□□ -0.36
HERC1-209ENST00000560519 GRIPAP1Q4V328 841 aa12.8□□□□□ -0.36
HERC1-209ENST00000560519 SNED1Q8TER0 1413 aa12.79□□□□□ -0.36
HERC1-209ENST00000560519 POTEIP0CG38 1075 aa12.79□□□□□ -0.36
HERC1-209ENST00000560519 POTEJP0CG39 1038 aa12.79□□□□□ -0.36
HERC1-209ENST00000560519 IARSP41252 1262 aaKnown RBP12.79□□□□□ -0.36
HERC1-209ENST00000560519 PIP4K2AP48426 406 aaPredicted RBP12.79□□□□□ -0.36
HERC1-209ENST00000560519 EAPPQ56P03 285 aaPredicted RBP12.79□□□□□ -0.36
HERC1-209ENST00000560519 CC2D2BQ6DHV5 1058 aa12.79□□□□□ -0.36
HERC1-209ENST00000560519 MCM10Q7L590 875 aa12.79□□□□□ -0.36
HERC1-209ENST00000560519 GPC2Q8N158 579 aa12.79□□□□□ -0.36
HERC1-209ENST00000560519 PNISRQ8TF01 805 aaKnown RBP12.79□□□□□ -0.36
HERC1-209ENST00000560519 C7orf43Q8WVR3 580 aa12.79□□□□□ -0.36
HERC1-209ENST00000560519 ZNF541Q9H0D2 1346 aa12.79□□□□□ -0.36
HERC1-209ENST00000560519 LAMB2P55268 1798 aa12.79□□□□□ -0.36
HERC1-209ENST00000560519 PRAMEF22A3QJZ6 481 aa12.78□□□□□ -0.36
HERC1-209ENST00000560519 EPHX2P34913 555 aa12.78□□□□□ -0.36
HERC1-209ENST00000560519 KIF6Q6ZMV9 814 aa12.78□□□□□ -0.36
HERC1-209ENST00000560519 JDP2Q8WYK2 163 aa12.78□□□□□ -0.36
HERC1-209ENST00000560519 PSMD1Q99460 953 aa12.78□□□□□ -0.36
HERC1-209ENST00000560519 PRDM10Q9NQV6 1147 aa12.78□□□□□ -0.36
HERC1-209ENST00000560519 ZNF277Q9NRM2 450 aaPredicted RBP12.78□□□□□ -0.36
HERC1-209ENST00000560519 LTBP1Q14766 1721 aa12.78□□□□□ -0.36
HERC1-209ENST00000560519 LMOD1P29536 600 aaPredicted RBP12.77□□□□□ -0.37
HERC1-209ENST00000560519 CTCFP49711 727 aaPredicted RBP12.77□□□□□ -0.37
HERC1-209ENST00000560519 CLEC11AQ9Y240 323 aa12.77□□□□□ -0.37
HERC1-209ENST00000560519 RNF123Q5XPI4 1314 aa12.77□□□□□ -0.37
HERC1-209ENST00000560519 ABCC12Q96J65 1359 aa12.77□□□□□ -0.37
HERC1-209ENST00000560519 DDX60Q8IY21 1712 aaKnown RBP12.76□□□□□ -0.37
HERC1-209ENST00000560519 FAM177BA6PVY3 158 aa12.76□□□□□ -0.37
HERC1-209ENST00000560519 NBPF26B4DH59 902 aa12.76□□□□□ -0.37
HERC1-209ENST00000560519 ERVV-1B6SEH8 477 aa12.76□□□□□ -0.37
HERC1-209ENST00000560519 FZD9O00144 591 aa12.76□□□□□ -0.37
HERC1-209ENST00000560519 PPP2R1AP30153 589 aa12.76□□□□□ -0.37
HERC1-209ENST00000560519 EIF6P56537 245 aaKnown RBP12.76□□□□□ -0.37
HERC1-209ENST00000560519 TAF7Q15545 349 aaPredicted RBP12.76□□□□□ -0.37
HERC1-209ENST00000560519 CRY2Q49AN0 593 aa12.76□□□□□ -0.37
HERC1-209ENST00000560519 NBPF10Q6P3W6 841 aaKnown RBP12.76□□□□□ -0.37
HERC1-209ENST00000560519 NBPF15Q8N660 670 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms