RNA–Protein interactions for RNA: ENST00000560131.1

TPM1-222, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 537 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-222ENST00000560131 DRC1Q96MC2 740 aa7.03□□□□□ -1.28
TPM1-222ENST00000560131 NOP58Q9Y2X3 529 aaKnown RBP7.03□□□□□ -1.28
TPM1-222ENST00000560131 NCAPD3P42695 1498 aa7.03□□□□□ -1.28
TPM1-222ENST00000560131 CFAP43Q8NDM7 1665 aa7.03□□□□□ -1.28
TPM1-222ENST00000560131 UNC13AQ9UPW8 1703 aa7.02□□□□□ -1.29
TPM1-222ENST00000560131 ERVH48-1M5A8F1 160 aa7.02□□□□□ -1.29
TPM1-222ENST00000560131 WASLO00401 505 aaPredicted RBP7.02□□□□□ -1.29
TPM1-222ENST00000560131 SCTRP47872 440 aa7.02□□□□□ -1.29
TPM1-222ENST00000560131 ZC3H6P61129 1189 aaKnown RBP7.02□□□□□ -1.29
TPM1-222ENST00000560131 ERVK-9P63128 1117 aa7.02□□□□□ -1.29
TPM1-222ENST00000560131 CC2D2BQ6DHV5 1058 aa7.02□□□□□ -1.29
TPM1-222ENST00000560131 VTI1AQ96AJ9 217 aa7.02□□□□□ -1.29
TPM1-222ENST00000560131 CITED4Q96RK1 184 aa7.02□□□□□ -1.29
TPM1-222ENST00000560131 MAP4K5Q9Y4K4 846 aa7.02□□□□□ -1.29
TPM1-222ENST00000560131 NCOA2Q15596 1464 aa7.01□□□□□ -1.29
TPM1-222ENST00000560131 KRTAP9-6A0A140TA67 174 aa7.01□□□□□ -1.29
TPM1-222ENST00000560131 VARSP26640 1264 aaKnown RBP7.01□□□□□ -1.29
TPM1-222ENST00000560131 GDF10P55107 478 aa7.01□□□□□ -1.29
TPM1-222ENST00000560131 DDX10Q13206 875 aaKnown RBP7.01□□□□□ -1.29
TPM1-222ENST00000560131 TSNAXIP1Q2TAA8 658 aa7.01□□□□□ -1.29
TPM1-222ENST00000560131 INTS6LQ5JSJ4 861 aaKnown RBP7.01□□□□□ -1.29
TPM1-222ENST00000560131 VASH1Q7L8A9 365 aaPredicted RBP7.01□□□□□ -1.29
TPM1-222ENST00000560131 TMC7Q7Z402 723 aa7.01□□□□□ -1.29
TPM1-222ENST00000560131 TNS4Q8IZW8 715 aa7.01□□□□□ -1.29
TPM1-222ENST00000560131 SVOPQ8N4V2 548 aa7.01□□□□□ -1.29
TPM1-222ENST00000560131 GPR161Q8N6U8 529 aaKnown RBP7.01□□□□□ -1.29
TPM1-222ENST00000560131 UBE2Q2Q8WVN8 375 aa7.01□□□□□ -1.29
TPM1-222ENST00000560131 WASHC2AQ641Q2 1341 aa7.01□□□□□ -1.29
TPM1-222ENST00000560131 ARHGAP35Q9NRY4 1499 aa7□□□□□ -1.29
TPM1-222ENST00000560131 NDUFB5O43674 189 aa7□□□□□ -1.29
TPM1-222ENST00000560131 TIMP2P16035 220 aa7□□□□□ -1.29
TPM1-222ENST00000560131 SCNN1DP51172 638 aa7□□□□□ -1.29
TPM1-222ENST00000560131 FGD1P98174 961 aa7□□□□□ -1.29
TPM1-222ENST00000560131 NNTQ13423 1086 aa7□□□□□ -1.29
TPM1-222ENST00000560131 SREK1Q8WXA9 508 aaKnown RBP7□□□□□ -1.29
TPM1-222ENST00000560131 SCARF2Q96GP6 870 aaPredicted RBP7□□□□□ -1.29
TPM1-222ENST00000560131 SLC4A9Q96Q91 983 aa7□□□□□ -1.29
TPM1-222ENST00000560131 BACH2Q9BYV9 841 aa7□□□□□ -1.29
TPM1-222ENST00000560131 OSBPL3Q9H4L5 887 aa7□□□□□ -1.29
TPM1-222ENST00000560131 BRPF3Q9ULD4 1205 aa7□□□□□ -1.29
TPM1-222ENST00000560131 MSTNO14793 375 aa6.99□□□□□ -1.29
TPM1-222ENST00000560131 TREHO43280 583 aa6.99□□□□□ -1.29
TPM1-222ENST00000560131 ADH1CP00326 375 aa6.99□□□□□ -1.29
TPM1-222ENST00000560131 INHAP05111 366 aa6.99□□□□□ -1.29
TPM1-222ENST00000560131 P4HBP07237 508 aaKnown RBP6.99□□□□□ -1.29
TPM1-222ENST00000560131 MPSTP25325 297 aa6.99□□□□□ -1.29
TPM1-222ENST00000560131 EPHA4P54764 986 aa6.99□□□□□ -1.29
TPM1-222ENST00000560131 WDR4P57081 412 aaKnown RBP6.99□□□□□ -1.29
TPM1-222ENST00000560131 PLCB3Q01970 1234 aa6.99□□□□□ -1.29
TPM1-222ENST00000560131 MRPL58Q14197 206 aaKnown RBP6.99□□□□□ -1.29
TPM1-222ENST00000560131 ALKBH2Q6NS38 261 aa6.99□□□□□ -1.29
TPM1-222ENST00000560131 C16orf46Q6P387 395 aa6.99□□□□□ -1.29
TPM1-222ENST00000560131 LRRC9Q6ZRR7 1453 aa6.98□□□□□ -1.29
TPM1-222ENST00000560131 ARHGEF15O94989 841 aa6.98□□□□□ -1.29
TPM1-222ENST00000560131 HMGB1P09429 215 aaKnown RBP6.98□□□□□ -1.29
TPM1-222ENST00000560131 ITGAEP38570 1179 aa6.98□□□□□ -1.29
TPM1-222ENST00000560131 FMR1Q06787 632 aaKnown RBP eCLIP6.98□□□□□ -1.29
TPM1-222ENST00000560131 DHX9Q08211 1270 aaKnown RBP6.98□□□□□ -1.29
TPM1-222ENST00000560131 STAG2Q8N3U4 1231 aa6.98□□□□□ -1.29
TPM1-222ENST00000560131 MPNDQ8N594 471 aa6.98□□□□□ -1.29
TPM1-222ENST00000560131 CHMP7Q8WUX9 453 aaPredicted RBP6.98□□□□□ -1.29
TPM1-222ENST00000560131 SAP130Q9H0E3 1048 aa6.98□□□□□ -1.29
TPM1-222ENST00000560131 TSPAN10Q9H1Z9 355 aaPredicted RBP6.98□□□□□ -1.29
TPM1-222ENST00000560131 SERTAD1Q9UHV2 236 aa6.98□□□□□ -1.29
TPM1-222ENST00000560131 POLR1AO95602 1720 aaPredicted RBP6.98□□□□□ -1.29
TPM1-222ENST00000560131 ABCA5Q8WWZ7 1642 aa6.98□□□□□ -1.29
TPM1-222ENST00000560131 A0A1W2PRU2 124 aa6.97□□□□□ -1.29
TPM1-222ENST00000560131 SCAMP3O14828 347 aaKnown RBP6.97□□□□□ -1.29
TPM1-222ENST00000560131 PPP1R12BO60237 982 aaPredicted RBP6.97□□□□□ -1.29
TPM1-222ENST00000560131 DSC3Q14574 896 aa6.97□□□□□ -1.29
TPM1-222ENST00000560131 TMC1Q8TDI8 760 aa6.97□□□□□ -1.29
TPM1-222ENST00000560131 DMRTB1Q96MA1 342 aa6.97□□□□□ -1.29
TPM1-222ENST00000560131 COL25A1Q9BXS0 654 aaPredicted RBP6.97□□□□□ -1.29
TPM1-222ENST00000560131 STIM2Q9P246 746 aa6.97□□□□□ -1.29
TPM1-222ENST00000560131 TLL2Q9Y6L7 1015 aa6.97□□□□□ -1.29
TPM1-222ENST00000560131 RNF123Q5XPI4 1314 aa6.97□□□□□ -1.29
TPM1-222ENST00000560131 ZBED9Q6R2W3 1325 aa6.97□□□□□ -1.29
TPM1-222ENST00000560131 WASHC2CQ9Y4E1 1318 aa6.97□□□□□ -1.29
TPM1-222ENST00000560131 KIF27Q86VH2 1401 aa6.96□□□□□ -1.3
TPM1-222ENST00000560131 STAU1O95793 577 aaKnown RBP6.96□□□□□ -1.3
TPM1-222ENST00000560131 ERCC5P28715 1186 aaPredicted RBP6.96□□□□□ -1.3
TPM1-222ENST00000560131 EIF1AXP47813 144 aaKnown RBP6.96□□□□□ -1.3
TPM1-222ENST00000560131 XPCQ01831 940 aaPredicted RBP6.96□□□□□ -1.3
TPM1-222ENST00000560131 AAMPQ13685 434 aa6.96□□□□□ -1.3
TPM1-222ENST00000560131 NAALADL2Q58DX5 795 aa6.96□□□□□ -1.3
TPM1-222ENST00000560131 C6orf118Q5T5N4 469 aa6.96□□□□□ -1.3
TPM1-222ENST00000560131 IPO9Q96P70 1041 aaKnown RBP6.96□□□□□ -1.3
TPM1-222ENST00000560131 CDK15Q96Q40 435 aa6.96□□□□□ -1.3
TPM1-222ENST00000560131 C2orf49Q9BVC5 232 aaPredicted RBP6.96□□□□□ -1.3
TPM1-222ENST00000560131 ETNK1Q9HBU6 452 aa6.96□□□□□ -1.3
TPM1-222ENST00000560131 TMPRSS4Q9NRS4 437 aa6.96□□□□□ -1.3
TPM1-222ENST00000560131 KDM5BQ9UGL1 1544 aa6.96□□□□□ -1.3
TPM1-222ENST00000560131 FZD6O60353 706 aa6.95□□□□□ -1.3
TPM1-222ENST00000560131 GNRH1P01148 92 aa6.95□□□□□ -1.3
TPM1-222ENST00000560131 ESCO1Q5FWF5 840 aa6.95□□□□□ -1.3
TPM1-222ENST00000560131 COX20Q5RI15 118 aa6.95□□□□□ -1.3
TPM1-222ENST00000560131 KRTAP1-3Q8IUG1 177 aa6.95□□□□□ -1.3
TPM1-222ENST00000560131 WHAMMQ8TF30 809 aa6.95□□□□□ -1.3
TPM1-222ENST00000560131 KLF16Q9BXK1 252 aaPredicted RBP6.95□□□□□ -1.3
TPM1-222ENST00000560131 CYLDQ9NQC7 956 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms