RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 RBM46Q8TBY0 533 aaKnown RBP16.52■□□□□ 0.24
SNX1-209ENST00000559961 PLEKHF1Q96S99 279 aa16.52■□□□□ 0.24
SNX1-209ENST00000559961 RRP7AQ9Y3A4 280 aaKnown RBP16.52■□□□□ 0.24
SNX1-209ENST00000559961 FAM177BA6PVY3 158 aa16.51■□□□□ 0.23
SNX1-209ENST00000559961 NYXQ9GZU5 481 aa16.51■□□□□ 0.23
SNX1-209ENST00000559961 TSPYL4Q9UJ04 414 aa16.51■□□□□ 0.23
SNX1-209ENST00000559961 FSTL1Q12841 308 aa16.5■□□□□ 0.23
SNX1-209ENST00000559961 GLTPD2A6NH11 291 aa16.49■□□□□ 0.23
SNX1-209ENST00000559961 ERVV-1B6SEH8 477 aa16.49■□□□□ 0.23
SNX1-209ENST00000559961 SRGNP10124 158 aa16.49■□□□□ 0.23
SNX1-209ENST00000559961 VEGFAP15692 232 aaPredicted RBP16.49■□□□□ 0.23
SNX1-209ENST00000559961 NPR1P16066 1061 aa16.49■□□□□ 0.23
SNX1-209ENST00000559961 ALDH1B1P30837 517 aa16.49■□□□□ 0.23
SNX1-209ENST00000559961 EIF4A1P60842 406 aaKnown RBP16.49■□□□□ 0.23
SNX1-209ENST00000559961 ERFEQ4G0M1 354 aa16.49■□□□□ 0.23
SNX1-209ENST00000559961 TAOK3Q9H2K8 898 aa16.49■□□□□ 0.23
SNX1-209ENST00000559961 KIAA1551Q9HCM1 1747 aa16.49■□□□□ 0.23
SNX1-209ENST00000559961 VIRMAQ69YN4 1812 aaKnown RBP16.49■□□□□ 0.23
SNX1-209ENST00000559961 MYBBP1AQ9BQG0 1328 aaKnown RBP16.48■□□□□ 0.23
SNX1-209ENST00000559961 NBPF26B4DH59 902 aa16.48■□□□□ 0.23
SNX1-209ENST00000559961 MYL6BP14649 208 aa16.48■□□□□ 0.23
SNX1-209ENST00000559961 PRPF40BQ6NWY9 871 aaKnown RBP16.48■□□□□ 0.23
SNX1-209ENST00000559961 NBPF10Q6P3W6 841 aaKnown RBP16.48■□□□□ 0.23
SNX1-209ENST00000559961 NBPF15Q8N660 670 aa16.48■□□□□ 0.23
SNX1-209ENST00000559961 SMC1BQ8NDV3 1235 aa16.48■□□□□ 0.23
SNX1-209ENST00000559961 THUMPD2Q9BTF0 503 aaKnown RBP16.48■□□□□ 0.23
SNX1-209ENST00000559961 BABAM1Q9NWV8 329 aa16.48■□□□□ 0.23
SNX1-209ENST00000559961 TMX4Q9H1E5 349 aaPredicted RBP16.47■□□□□ 0.23
SNX1-209ENST00000559961 EIF2S2P20042 333 aaKnown RBP16.46■□□□□ 0.23
SNX1-209ENST00000559961 NEUROD2Q15784 382 aa16.46■□□□□ 0.23
SNX1-209ENST00000559961 CCDC93Q567U6 631 aa16.46■□□□□ 0.23
SNX1-209ENST00000559961 ARFGEF1Q9Y6D6 1849 aa16.46■□□□□ 0.23
SNX1-209ENST00000559961 SIPA1L3O60292 1781 aaPredicted RBP16.46■□□□□ 0.22
SNX1-209ENST00000559961 ERBB4Q15303 1308 aa16.45■□□□□ 0.22
SNX1-209ENST00000559961 NFKBIEO00221 500 aa16.45■□□□□ 0.22
SNX1-209ENST00000559961 RTKN2Q8IZC4 609 aa16.45■□□□□ 0.22
SNX1-209ENST00000559961 MAP3K15Q6ZN16 1313 aa16.45■□□□□ 0.22
SNX1-209ENST00000559961 TMPOP42166 694 aaKnown RBP16.44■□□□□ 0.22
SNX1-209ENST00000559961 HLFQ16534 295 aa16.44■□□□□ 0.22
SNX1-209ENST00000559961 PPP1R42Q7Z4L9 355 aa16.44■□□□□ 0.22
SNX1-209ENST00000559961 RPGRQ92834 1020 aaKnown RBP16.44■□□□□ 0.22
SNX1-209ENST00000559961 LAS1LQ9Y4W2 734 aaKnown RBP16.44■□□□□ 0.22
SNX1-209ENST00000559961 NRXN2Q9P2S2 1712 aa16.44■□□□□ 0.22
SNX1-209ENST00000559961 AFDNP55196 1824 aaKnown RBP16.43■□□□□ 0.22
SNX1-209ENST00000559961 RUNDC1Q96C34 613 aa16.43■□□□□ 0.22
SNX1-209ENST00000559961 ZBTB3Q9H5J0 574 aa16.43■□□□□ 0.22
SNX1-209ENST00000559961 BRCA1P38398 1863 aaKnown RBP16.43■□□□□ 0.22
SNX1-209ENST00000559961 LTBP3Q9NS15 1303 aa16.43■□□□□ 0.22
SNX1-209ENST00000559961 CCDC146Q8IYE0 955 aa16.42■□□□□ 0.22
SNX1-209ENST00000559961 SCN7AQ01118 1682 aa16.42■□□□□ 0.22
SNX1-209ENST00000559961 KLRG2A4D1S0 409 aaPredicted RBP16.41■□□□□ 0.22
SNX1-209ENST00000559961 GPTP24298 496 aa16.41■□□□□ 0.22
SNX1-209ENST00000559961 PARP10Q53GL7 1025 aa16.41■□□□□ 0.22
SNX1-209ENST00000559961 HSP90AB3PQ58FF7 597 aa16.41■□□□□ 0.22
SNX1-209ENST00000559961 TTLL7Q6ZT98 887 aa16.41■□□□□ 0.22
SNX1-209ENST00000559961 RBM17Q96I25 401 aaKnown RBP16.41■□□□□ 0.22
SNX1-209ENST00000559961 IQCA1LA6NCM1 817 aa16.4■□□□□ 0.22
SNX1-209ENST00000559961 FKBP4Q02790 459 aaKnown RBP eCLIP16.4■□□□□ 0.22
SNX1-209ENST00000559961 GRIPAP1Q4V328 841 aa16.4■□□□□ 0.22
SNX1-209ENST00000559961 CC2D2BQ6DHV5 1058 aa16.4■□□□□ 0.22
SNX1-209ENST00000559961 GIGYF2Q6Y7W6 1299 aaKnown RBP16.39■□□□□ 0.21
SNX1-209ENST00000559961 NUTM1Q86Y26 1132 aa16.39■□□□□ 0.21
SNX1-209ENST00000559961 JDP2Q8WYK2 163 aa16.39■□□□□ 0.21
SNX1-209ENST00000559961 NLRP3Q96P20 1036 aa16.39■□□□□ 0.21
SNX1-209ENST00000559961 CALD1Q05682 793 aaKnown RBP16.38■□□□□ 0.21
SNX1-209ENST00000559961 AIMP1Q12904 312 aaKnown RBP16.38■□□□□ 0.21
SNX1-209ENST00000559961 UTP14AQ9BVJ6 771 aaKnown RBP16.38■□□□□ 0.21
SNX1-209ENST00000559961 PRELPP51888 382 aa16.37■□□□□ 0.21
SNX1-209ENST00000559961 NECTIN2Q92692 538 aa16.37■□□□□ 0.21
SNX1-209ENST00000559961 CHMP4AQ9BY43 222 aa16.37■□□□□ 0.21
SNX1-209ENST00000559961 ADAMTS8Q9UP79 889 aa16.37■□□□□ 0.21
SNX1-209ENST00000559961 SUSD4Q5VX71 490 aa16.36■□□□□ 0.21
SNX1-209ENST00000559961 ZNF34Q8IZ26 560 aa16.36■□□□□ 0.21
SNX1-209ENST00000559961 SYNE4Q8N205 404 aa16.36■□□□□ 0.21
SNX1-209ENST00000559961 C7orf43Q8WVR3 580 aa16.36■□□□□ 0.21
SNX1-209ENST00000559961 ZNF277Q9NRM2 450 aaPredicted RBP16.36■□□□□ 0.21
SNX1-209ENST00000559961 DDNO94850 711 aaPredicted RBP16.35■□□□□ 0.21
SNX1-209ENST00000559961 COPS6Q7L5N1 327 aa16.35■□□□□ 0.21
SNX1-209ENST00000559961 PRKRIP1Q9H875 184 aaPredicted RBP16.35■□□□□ 0.21
SNX1-209ENST00000559961 IBTKQ9P2D0 1353 aaPredicted RBP16.35■□□□□ 0.21
SNX1-209ENST00000559961 DLEC1Q9Y238 1755 aa16.34■□□□□ 0.21
SNX1-209ENST00000559961 CHL1O00533 1208 aa16.34■□□□□ 0.21
SNX1-209ENST00000559961 IARSP41252 1262 aaKnown RBP16.34■□□□□ 0.21
SNX1-209ENST00000559961 EIF6P56537 245 aaKnown RBP16.34■□□□□ 0.21
SNX1-209ENST00000559961 CRY2Q49AN0 593 aa16.34■□□□□ 0.21
SNX1-209ENST00000559961 HDGFL1Q5TGJ6 251 aa16.34■□□□□ 0.21
SNX1-209ENST00000559961 XAGE3Q8WTP9 111 aa16.34■□□□□ 0.21
SNX1-209ENST00000559961 KLRG1Q96E93 195 aa16.34■□□□□ 0.21
SNX1-209ENST00000559961 CRAMP1Q96RY5 1269 aa16.34■□□□□ 0.21
SNX1-209ENST00000559961 DDX21Q9NR30 783 aaKnown RBP eCLIP16.34■□□□□ 0.21
SNX1-209ENST00000559961 RNF123Q5XPI4 1314 aa16.34■□□□□ 0.21
SNX1-209ENST00000559961 PPEF1O14829 653 aaPredicted RBP16.33■□□□□ 0.2
SNX1-209ENST00000559961 HOXB7P09629 217 aa16.33■□□□□ 0.2
SNX1-209ENST00000559961 HOXA10P31260 410 aaPredicted RBP16.33■□□□□ 0.2
SNX1-209ENST00000559961 ZEB1P37275 1124 aaPredicted RBP16.33■□□□□ 0.2
SNX1-209ENST00000559961 CHADLQ6NUI6 762 aa16.33■□□□□ 0.2
SNX1-209ENST00000559961 DNAJC5GQ8N7S2 189 aa16.33■□□□□ 0.2
SNX1-209ENST00000559961 PSMD1Q99460 953 aa16.33■□□□□ 0.2
SNX1-209ENST00000559961 TRMT112Q9UI30 125 aaKnown RBP16.33■□□□□ 0.2
SNX1-209ENST00000559961 CLEC11AQ9Y240 323 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms