RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 AATKQ6ZMQ8 1374 aa7.01□□□□□ -1.29
SPG11-220ENST00000559933 KIAA0232Q92628 1395 aa7.01□□□□□ -1.29
SPG11-220ENST00000559933 CCER2I3L3R5 266 aa7.01□□□□□ -1.29
SPG11-220ENST00000559933 GCP02774 474 aa7.01□□□□□ -1.29
SPG11-220ENST00000559933 USP46P62068 366 aa7.01□□□□□ -1.29
SPG11-220ENST00000559933 TTLL12Q14166 644 aaPredicted RBP7.01□□□□□ -1.29
SPG11-220ENST00000559933 FAM9BQ8IZU0 186 aa7.01□□□□□ -1.29
SPG11-220ENST00000559933 LTV1Q96GA3 475 aaPredicted RBP7.01□□□□□ -1.29
SPG11-220ENST00000559933 SLC27A5Q9Y2P5 690 aa7.01□□□□□ -1.29
SPG11-220ENST00000559933 NUTM2BA6NNL0 878 aaPredicted RBP7□□□□□ -1.29
SPG11-220ENST00000559933 NUTM2EB1AL46 878 aaPredicted RBP7□□□□□ -1.29
SPG11-220ENST00000559933 PPEF1O14829 653 aaPredicted RBP7□□□□□ -1.29
SPG11-220ENST00000559933 ZMYND10O75800 440 aa7□□□□□ -1.29
SPG11-220ENST00000559933 HOXC9P31274 260 aa7□□□□□ -1.29
SPG11-220ENST00000559933 HSP90AB2PQ58FF8 381 aa7□□□□□ -1.29
SPG11-220ENST00000559933 NUTM1Q86Y26 1132 aa7□□□□□ -1.29
SPG11-220ENST00000559933 NUTM2AQ8IVF1 878 aaPredicted RBP7□□□□□ -1.29
SPG11-220ENST00000559933 SALL2Q9Y467 1007 aaPredicted RBP7□□□□□ -1.29
SPG11-220ENST00000559933 PLCH1Q4KWH8 1693 aa7□□□□□ -1.29
SPG11-220ENST00000559933 LMO7Q8WWI1 1683 aa7□□□□□ -1.29
SPG11-220ENST00000559933 RGPD1P0DJD0 1748 aa6.99□□□□□ -1.29
SPG11-220ENST00000559933 FLT4P35916 1363 aa6.99□□□□□ -1.29
SPG11-220ENST00000559933 ADAMTS2O95450 1211 aa6.99□□□□□ -1.29
SPG11-220ENST00000559933 AMPHP49418 695 aa6.99□□□□□ -1.29
SPG11-220ENST00000559933 EIF4A2Q14240 407 aaKnown RBP6.99□□□□□ -1.29
SPG11-220ENST00000559933 CCDC146Q8IYE0 955 aa6.99□□□□□ -1.29
SPG11-220ENST00000559933 USHBP1Q8N6Y0 703 aa6.99□□□□□ -1.29
SPG11-220ENST00000559933 PDZRN3Q9UPQ7 1066 aa6.99□□□□□ -1.29
SPG11-220ENST00000559933 CAMTA1Q9Y6Y1 1673 aa6.98□□□□□ -1.29
SPG11-220ENST00000559933 NRG2O14511 850 aaPredicted RBP6.98□□□□□ -1.29
SPG11-220ENST00000559933 U2SURPO15042 1029 aaKnown RBP6.98□□□□□ -1.29
SPG11-220ENST00000559933 ARHGEF25Q86VW2 580 aa6.98□□□□□ -1.29
SPG11-220ENST00000559933 AEBP1Q8IUX7 1158 aa6.98□□□□□ -1.29
SPG11-220ENST00000559933 PNISRQ8TF01 805 aaKnown RBP6.98□□□□□ -1.29
SPG11-220ENST00000559933 LRRC59Q96AG4 307 aaKnown RBP6.98□□□□□ -1.29
SPG11-220ENST00000559933 FAM217BQ9NTX9 383 aaPredicted RBP6.98□□□□□ -1.29
SPG11-220ENST00000559933 RTL1A6NKG5 1358 aa6.97□□□□□ -1.29
SPG11-220ENST00000559933 FAM83GA6ND36 823 aa6.97□□□□□ -1.29
SPG11-220ENST00000559933 HMOX1P09601 288 aa6.97□□□□□ -1.29
SPG11-220ENST00000559933 IL13P35225 146 aa6.97□□□□□ -1.29
SPG11-220ENST00000559933 BLMP54132 1417 aaPredicted RBP6.97□□□□□ -1.29
SPG11-220ENST00000559933 BRICD5Q6PL45 260 aa6.97□□□□□ -1.29
SPG11-220ENST00000559933 KCNH5Q8NCM2 988 aa6.97□□□□□ -1.29
SPG11-220ENST00000559933 THAP11Q96EK4 314 aa6.97□□□□□ -1.29
SPG11-220ENST00000559933 PRDM11Q9NQV5 511 aa6.97□□□□□ -1.29
SPG11-220ENST00000559933 ADAMTS8Q9UP79 889 aa6.97□□□□□ -1.29
SPG11-220ENST00000559933 FAM208AQ9UK61 1670 aaKnown RBP6.96□□□□□ -1.29
SPG11-220ENST00000559933 CPDO75976 1380 aa6.96□□□□□ -1.29
SPG11-220ENST00000559933 INSRP06213 1382 aa6.96□□□□□ -1.29
SPG11-220ENST00000559933 JCADQ9P266 1359 aa6.96□□□□□ -1.29
SPG11-220ENST00000559933 NRAPQ86VF7 1730 aa6.96□□□□□ -1.29
SPG11-220ENST00000559933 COL14A1Q05707 1796 aaKnown RBP6.96□□□□□ -1.3
SPG11-220ENST00000559933 DIAPH1O60610 1272 aaKnown RBP6.96□□□□□ -1.3
SPG11-220ENST00000559933 U2AF1L5P0DN76 240 aaPredicted RBP6.96□□□□□ -1.3
SPG11-220ENST00000559933 U2AF1Q01081 240 aaKnown RBP eCLIP6.96□□□□□ -1.3
SPG11-220ENST00000559933 WDR43Q15061 677 aaKnown RBP eCLIP6.96□□□□□ -1.3
SPG11-220ENST00000559933 SPRYD7Q5W111 196 aa6.96□□□□□ -1.3
SPG11-220ENST00000559933 ZNF598Q86UK7 904 aaKnown RBP6.96□□□□□ -1.3
SPG11-220ENST00000559933 ANKRD24Q8TF21 1146 aa6.96□□□□□ -1.3
SPG11-220ENST00000559933 IP6K1Q92551 441 aa6.96□□□□□ -1.3
SPG11-220ENST00000559933 CFAP53Q96M91 514 aa6.96□□□□□ -1.3
SPG11-220ENST00000559933 COL5A2P05997 1499 aaPredicted RBP6.96□□□□□ -1.3
SPG11-220ENST00000559933 ZBTB24O43167 697 aaPredicted RBP6.95□□□□□ -1.3
SPG11-220ENST00000559933 SSTR3P32745 418 aaPredicted RBP6.95□□□□□ -1.3
SPG11-220ENST00000559933 MSS51Q4VC12 460 aa6.95□□□□□ -1.3
SPG11-220ENST00000559933 ZNF697Q5TEC3 545 aa6.95□□□□□ -1.3
SPG11-220ENST00000559933 RNF19BQ6ZMZ0 732 aa6.95□□□□□ -1.3
SPG11-220ENST00000559933 AK7Q96M32 723 aa6.95□□□□□ -1.3
SPG11-220ENST00000559933 STRN4Q9NRL3 753 aa6.95□□□□□ -1.3
SPG11-220ENST00000559933 FCF1Q9Y324 198 aaKnown RBP6.95□□□□□ -1.3
SPG11-220ENST00000559933 RRP7AQ9Y3A4 280 aaKnown RBP6.95□□□□□ -1.3
SPG11-220ENST00000559933 HOXA2O43364 376 aa6.94□□□□□ -1.3
SPG11-220ENST00000559933 CD2BP2O95400 341 aaKnown RBP6.94□□□□□ -1.3
SPG11-220ENST00000559933 CSB-PGBD3P0DP91 1061 aa6.94□□□□□ -1.3
SPG11-220ENST00000559933 NBPF6Q5VWK0 638 aa6.94□□□□□ -1.3
SPG11-220ENST00000559933 SULT6B1Q6IMI4 303 aa6.94□□□□□ -1.3
SPG11-220ENST00000559933 LIAT1Q6ZQX7 453 aa6.94□□□□□ -1.3
SPG11-220ENST00000559933 FAM160A2Q8N612 972 aaPredicted RBP6.94□□□□□ -1.3
SPG11-220ENST00000559933 NBPF4Q96M43 638 aa6.94□□□□□ -1.3
SPG11-220ENST00000559933 C8orf37Q96NL8 207 aa6.94□□□□□ -1.3
SPG11-220ENST00000559933 USB1Q9BQ65 265 aaKnown RBP6.94□□□□□ -1.3
SPG11-220ENST00000559933 BTG4Q9NY30 223 aa6.94□□□□□ -1.3
SPG11-220ENST00000559933 ABCC6O95255 1503 aa6.94□□□□□ -1.3
SPG11-220ENST00000559933 IGSF1Q8N6C5 1336 aa6.94□□□□□ -1.3
SPG11-220ENST00000559933 MEGF6O75095 1541 aa6.93□□□□□ -1.3
SPG11-220ENST00000559933 PRKAR2BP31323 418 aa6.93□□□□□ -1.3
SPG11-220ENST00000559933 RPIAP49247 311 aa6.93□□□□□ -1.3
SPG11-220ENST00000559933 HNRNPUQ00839 825 aaKnown RBP eCLIP6.93□□□□□ -1.3
SPG11-220ENST00000559933 AMHR2Q16671 573 aa6.93□□□□□ -1.3
SPG11-220ENST00000559933 LARP1Q6PKG0 1096 aaKnown RBP6.93□□□□□ -1.3
SPG11-220ENST00000559933 GIGYF2Q6Y7W6 1299 aaKnown RBP6.93□□□□□ -1.3
SPG11-220ENST00000559933 PHACTR3Q96KR7 559 aa6.93□□□□□ -1.3
SPG11-220ENST00000559933 RSPH6AQ9H0K4 717 aa6.93□□□□□ -1.3
SPG11-220ENST00000559933 KIF24Q5T7B8 1368 aa6.93□□□□□ -1.3
SPG11-220ENST00000559933 WNK3Q9BYP7 1800 aa6.92□□□□□ -1.3
SPG11-220ENST00000559933 SLIT2O94813 1529 aa6.92□□□□□ -1.3
SPG11-220ENST00000559933 MEX3CQ5U5Q3 659 aaKnown RBP6.92□□□□□ -1.3
SPG11-220ENST00000559933 TRAF7Q6Q0C0 670 aa6.92□□□□□ -1.3
SPG11-220ENST00000559933 PLEKHF1Q96S99 279 aa6.92□□□□□ -1.3
SPG11-220ENST00000559933 PRDM9Q9NQV7 894 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 276.9 ms