RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 TCERG1O14776 1098 aaKnown RBP11.76□□□□□ -0.53
LDLR-210ENST00000559340 MS4A1P11836 297 aa11.76□□□□□ -0.53
LDLR-210ENST00000559340 PIP4K2AP48426 406 aaPredicted RBP11.76□□□□□ -0.53
LDLR-210ENST00000559340 FLIIQ13045 1269 aa11.76□□□□□ -0.53
LDLR-210ENST00000559340 FKBP5Q13451 457 aaPredicted RBP11.76□□□□□ -0.53
LDLR-210ENST00000559340 CLEC4GQ6UXB4 293 aa11.76□□□□□ -0.53
LDLR-210ENST00000559340 RIC3Q7Z5B4 369 aa11.76□□□□□ -0.53
LDLR-210ENST00000559340 PLBD2Q8NHP8 589 aa11.76□□□□□ -0.53
LDLR-210ENST00000559340 ANXA1P04083 346 aa11.75□□□□□ -0.53
LDLR-210ENST00000559340 PROSER3Q2NL68 480 aa11.75□□□□□ -0.53
LDLR-210ENST00000559340 KSR2Q6VAB6 950 aa11.75□□□□□ -0.53
LDLR-210ENST00000559340 COL23A1Q86Y22 540 aaPredicted RBP11.75□□□□□ -0.53
LDLR-210ENST00000559340 NLGN1Q8N2Q7 840 aa11.75□□□□□ -0.53
LDLR-210ENST00000559340 ARHGAP45Q92619 1136 aa11.75□□□□□ -0.53
LDLR-210ENST00000559340 API5Q9BZZ5 524 aaKnown RBP11.75□□□□□ -0.53
LDLR-210ENST00000559340 TBC1D2BQ9UPU7 963 aa11.75□□□□□ -0.53
LDLR-210ENST00000559340 MAP3K15Q6ZN16 1313 aa11.75□□□□□ -0.53
LDLR-210ENST00000559340 C4AP0C0L4 1744 aa11.74□□□□□ -0.53
LDLR-210ENST00000559340 NEXNQ0ZGT2 675 aa11.74□□□□□ -0.53
LDLR-210ENST00000559340 LRP10Q7Z4F1 713 aa11.74□□□□□ -0.53
LDLR-210ENST00000559340 PHAXQ9H814 394 aaKnown RBP11.74□□□□□ -0.53
LDLR-210ENST00000559340 PNPLA7Q6ZV29 1317 aa11.74□□□□□ -0.53
LDLR-210ENST00000559340 ANKRD36CQ5JPF3 1778 aa11.73□□□□□ -0.53
LDLR-210ENST00000559340 ZKSCAN2Q63HK3 967 aa11.73□□□□□ -0.53
LDLR-210ENST00000559340 BCORQ6W2J9 1755 aa11.73□□□□□ -0.53
LDLR-210ENST00000559340 GIGYF2Q6Y7W6 1299 aaKnown RBP11.73□□□□□ -0.53
LDLR-210ENST00000559340 TTLL7Q6ZT98 887 aa11.73□□□□□ -0.53
LDLR-210ENST00000559340 BCL2L13Q9BXK5 485 aa11.73□□□□□ -0.53
LDLR-210ENST00000559340 USP42Q9H9J4 1324 aaKnown RBP11.73□□□□□ -0.53
LDLR-210ENST00000559340 ARFGEF2Q9Y6D5 1785 aa11.72□□□□□ -0.53
LDLR-210ENST00000559340 BCAR3O75815 825 aa11.72□□□□□ -0.53
LDLR-210ENST00000559340 CAMTA2O94983 1202 aa11.72□□□□□ -0.53
LDLR-210ENST00000559340 ZBTB7AO95365 584 aa11.72□□□□□ -0.53
LDLR-210ENST00000559340 USPL1Q5W0Q7 1092 aa11.72□□□□□ -0.53
LDLR-210ENST00000559340 G2E3Q7L622 706 aa11.72□□□□□ -0.53
LDLR-210ENST00000559340 DNAAF4Q8WXU2 420 aa11.72□□□□□ -0.53
LDLR-210ENST00000559340 ZBTB3Q9H5J0 574 aa11.72□□□□□ -0.53
LDLR-210ENST00000559340 NOB1Q9ULX3 412 aaKnown RBP11.72□□□□□ -0.53
LDLR-210ENST00000559340 AFDNP55196 1824 aaKnown RBP11.72□□□□□ -0.53
LDLR-210ENST00000559340 CASZ1Q86V15 1759 aa11.72□□□□□ -0.53
LDLR-210ENST00000559340 PI4KAP2A4QPH2 592 aa11.71□□□□□ -0.53
LDLR-210ENST00000559340 PTGER2P43116 358 aa11.71□□□□□ -0.53
LDLR-210ENST00000559340 TCIRG1Q13488 830 aa11.71□□□□□ -0.53
LDLR-210ENST00000559340 PARP10Q53GL7 1025 aa11.71□□□□□ -0.53
LDLR-210ENST00000559340 PI4KAP1Q8N8J0 262 aa11.71□□□□□ -0.53
LDLR-210ENST00000559340 FRAT1Q92837 279 aaPredicted RBP11.71□□□□□ -0.53
LDLR-210ENST00000559340 SETDB2Q96T68 719 aa11.71□□□□□ -0.53
LDLR-210ENST00000559340 METTL22Q9BUU2 404 aaPredicted RBP11.71□□□□□ -0.53
LDLR-210ENST00000559340 MTFR1LQ9H019 292 aa11.71□□□□□ -0.53
LDLR-210ENST00000559340 MAP3K2Q9Y2U5 619 aa11.71□□□□□ -0.53
LDLR-210ENST00000559340 SCN7AQ01118 1682 aa11.71□□□□□ -0.54
LDLR-210ENST00000559340 GYS1P13807 737 aa11.7□□□□□ -0.54
LDLR-210ENST00000559340 POLD1P28340 1107 aa11.7□□□□□ -0.54
LDLR-210ENST00000559340 ATF7IPQ6VMQ6 1270 aa11.7□□□□□ -0.54
LDLR-210ENST00000559340 AMIGO3Q86WK7 504 aa11.7□□□□□ -0.54
LDLR-210ENST00000559340 PDGFDQ9GZP0 370 aaPredicted RBP11.7□□□□□ -0.54
LDLR-210ENST00000559340 SRP68Q9UHB9 627 aaKnown RBP11.7□□□□□ -0.54
LDLR-210ENST00000559340 HSP90B1P14625 803 aaKnown RBP11.69□□□□□ -0.54
LDLR-210ENST00000559340 CCT4P50991 539 aaKnown RBP11.69□□□□□ -0.54
LDLR-210ENST00000559340 TRIM28Q13263 835 aaKnown RBP11.69□□□□□ -0.54
LDLR-210ENST00000559340 HLFQ16534 295 aa11.69□□□□□ -0.54
LDLR-210ENST00000559340 SMIM5Q71RC9 77 aa11.69□□□□□ -0.54
LDLR-210ENST00000559340 PPP1R42Q7Z4L9 355 aa11.69□□□□□ -0.54
LDLR-210ENST00000559340 FTSJ3Q8IY81 847 aaKnown RBP11.69□□□□□ -0.54
LDLR-210ENST00000559340 NYXQ9GZU5 481 aa11.69□□□□□ -0.54
LDLR-210ENST00000559340 CHMP4BQ9H444 224 aaKnown RBP11.69□□□□□ -0.54
LDLR-210ENST00000559340 HDAC5Q9UQL6 1122 aa11.69□□□□□ -0.54
LDLR-210ENST00000559340 NIP7Q9Y221 180 aaKnown RBP eCLIP11.69□□□□□ -0.54
LDLR-210ENST00000559340 ATF5Q9Y2D1 282 aaPredicted RBP11.69□□□□□ -0.54
LDLR-210ENST00000559340 PARP3Q9Y6F1 533 aa11.69□□□□□ -0.54
LDLR-210ENST00000559340 NPHP1O15259 732 aa11.68□□□□□ -0.54
LDLR-210ENST00000559340 ALDH1L1O75891 902 aa11.68□□□□□ -0.54
LDLR-210ENST00000559340 FKBP8Q14318 412 aa11.68□□□□□ -0.54
LDLR-210ENST00000559340 SLC4A10Q6U841 1118 aa11.68□□□□□ -0.54
LDLR-210ENST00000559340 TPTE2Q6XPS3 522 aa11.68□□□□□ -0.54
LDLR-210ENST00000559340 DZIP1LQ8IYY4 767 aaKnown RBP11.68□□□□□ -0.54
LDLR-210ENST00000559340 ZNF34Q8IZ26 560 aa11.68□□□□□ -0.54
LDLR-210ENST00000559340 CCDC191Q8NCU4 936 aa11.68□□□□□ -0.54
LDLR-210ENST00000559340 LINS1Q8NG48 757 aa11.68□□□□□ -0.54
LDLR-210ENST00000559340 MYD88Q99836 296 aa11.68□□□□□ -0.54
LDLR-210ENST00000559340 SRCIN1Q9C0H9 1055 aa11.68□□□□□ -0.54
LDLR-210ENST00000559340 ATP10DQ9P241 1426 aa11.68□□□□□ -0.54
LDLR-210ENST00000559340 ADCY9O60503 1353 aa11.67□□□□□ -0.54
LDLR-210ENST00000559340 RNF123Q5XPI4 1314 aa11.67□□□□□ -0.54
LDLR-210ENST00000559340 GTF2E1P29083 439 aaPredicted RBP11.67□□□□□ -0.54
LDLR-210ENST00000559340 TM4SF1P30408 202 aa11.67□□□□□ -0.54
LDLR-210ENST00000559340 PDE3AQ14432 1141 aa11.67□□□□□ -0.54
LDLR-210ENST00000559340 TBC1D9BQ66K14 1250 aa11.67□□□□□ -0.54
LDLR-210ENST00000559340 BICDL1Q6ZP65 573 aa11.67□□□□□ -0.54
LDLR-210ENST00000559340 SGIP1Q9BQI5 828 aa11.67□□□□□ -0.54
LDLR-210ENST00000559340 SYT17Q9BSW7 474 aa11.67□□□□□ -0.54
LDLR-210ENST00000559340 ISCA1Q9BUE6 129 aa11.67□□□□□ -0.54
LDLR-210ENST00000559340 BCL2L12Q9HB09 334 aa11.67□□□□□ -0.54
LDLR-210ENST00000559340 CWC25Q9NXE8 425 aaPredicted RBP11.67□□□□□ -0.54
LDLR-210ENST00000559340 PXDNLA1KZ92 1463 aa11.67□□□□□ -0.54
LDLR-210ENST00000559340 N4BP2Q86UW6 1770 aaPredicted RBP11.67□□□□□ -0.54
LDLR-210ENST00000559340 CARMIL3Q8ND23 1372 aa11.67□□□□□ -0.54
LDLR-210ENST00000559340 COL24A1Q17RW2 1714 aa11.66□□□□□ -0.54
LDLR-210ENST00000559340 F6X3S4 739 aa11.66□□□□□ -0.54
LDLR-210ENST00000559340 GPTP24298 496 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms