RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 RPS6KA4O75676 772 aa12.26□□□□□ -0.45
CUX1-216ENST00000558469 SMIM5Q71RC9 77 aa12.26□□□□□ -0.45
CUX1-216ENST00000558469 COPS6Q7L5N1 327 aa12.26□□□□□ -0.45
CUX1-216ENST00000558469 ARXQ96QS3 562 aa12.26□□□□□ -0.45
CUX1-216ENST00000558469 RTCBQ9Y3I0 505 aaKnown RBP12.26□□□□□ -0.45
CUX1-216ENST00000558469 ANKRD36CQ5JPF3 1778 aa12.25□□□□□ -0.45
CUX1-216ENST00000558469 BCORQ6W2J9 1755 aa12.25□□□□□ -0.45
CUX1-216ENST00000558469 IPO8O15397 1037 aaKnown RBP12.25□□□□□ -0.45
CUX1-216ENST00000558469 EIF5P55010 431 aaKnown RBP12.25□□□□□ -0.45
CUX1-216ENST00000558469 FKBP5Q13451 457 aaPredicted RBP12.25□□□□□ -0.45
CUX1-216ENST00000558469 ZNF827Q17R98 1081 aa12.25□□□□□ -0.45
CUX1-216ENST00000558469 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.25□□□□□ -0.45
CUX1-216ENST00000558469 AKT1S1Q96B36 256 aa12.25□□□□□ -0.45
CUX1-216ENST00000558469 TFCP2L1Q9NZI6 479 aa12.25□□□□□ -0.45
CUX1-216ENST00000558469 PTPRCP08575 1304 aa12.25□□□□□ -0.45
CUX1-216ENST00000558469 COL15A1P39059 1388 aa12.25□□□□□ -0.45
CUX1-216ENST00000558469 PHF14O94880 888 aa12.24□□□□□ -0.45
CUX1-216ENST00000558469 DDX58O95786 925 aaKnown RBP12.24□□□□□ -0.45
CUX1-216ENST00000558469 RRP1P56182 461 aaKnown RBP12.24□□□□□ -0.45
CUX1-216ENST00000558469 MKRN4PQ13434 485 aaPredicted RBP12.24□□□□□ -0.45
CUX1-216ENST00000558469 ZKSCAN2Q63HK3 967 aa12.24□□□□□ -0.45
CUX1-216ENST00000558469 TTLL7Q6ZT98 887 aa12.24□□□□□ -0.45
CUX1-216ENST00000558469 N4BP2Q86UW6 1770 aaPredicted RBP12.24□□□□□ -0.45
CUX1-216ENST00000558469 AMIGO3Q86WK7 504 aa12.24□□□□□ -0.45
CUX1-216ENST00000558469 TBC1D2BQ9UPU7 963 aa12.24□□□□□ -0.45
CUX1-216ENST00000558469 A0A087WZG4 1122 aa12.23□□□□□ -0.45
CUX1-216ENST00000558469 TRAPPC3LQ5T215 181 aa12.23□□□□□ -0.45
CUX1-216ENST00000558469 ATF7IPQ6VMQ6 1270 aa12.23□□□□□ -0.45
CUX1-216ENST00000558469 KIF6Q6ZMV9 814 aa12.23□□□□□ -0.45
CUX1-216ENST00000558469 ANKRD13DQ6ZTN6 518 aa12.23□□□□□ -0.45
CUX1-216ENST00000558469 RIC3Q7Z5B4 369 aa12.23□□□□□ -0.45
CUX1-216ENST00000558469 DZIP3Q86Y13 1208 aaKnown RBP12.23□□□□□ -0.45
CUX1-216ENST00000558469 ARHGAP45Q92619 1136 aa12.23□□□□□ -0.45
CUX1-216ENST00000558469 STK32BQ9NY57 414 aa12.23□□□□□ -0.45
CUX1-216ENST00000558469 TNNQ9UQP3 1299 aa12.23□□□□□ -0.45
CUX1-216ENST00000558469 SCN7AQ01118 1682 aa12.22□□□□□ -0.45
CUX1-216ENST00000558469 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.22□□□□□ -0.45
CUX1-216ENST00000558469 PI4KAP2A4QPH2 592 aa12.22□□□□□ -0.45
CUX1-216ENST00000558469 F6X3S4 739 aa12.22□□□□□ -0.45
CUX1-216ENST00000558469 TRIM27P14373 513 aa12.22□□□□□ -0.45
CUX1-216ENST00000558469 SLC15A2Q16348 729 aa12.22□□□□□ -0.45
CUX1-216ENST00000558469 KSR2Q6VAB6 950 aa12.22□□□□□ -0.45
CUX1-216ENST00000558469 PI4KAP1Q8N8J0 262 aa12.22□□□□□ -0.45
CUX1-216ENST00000558469 PLBD2Q8NHP8 589 aa12.22□□□□□ -0.45
CUX1-216ENST00000558469 ARHGEF1Q92888 912 aaKnown RBP12.22□□□□□ -0.45
CUX1-216ENST00000558469 CLUAP1Q96AJ1 413 aa12.22□□□□□ -0.45
CUX1-216ENST00000558469 API5Q9BZZ5 524 aaKnown RBP12.22□□□□□ -0.45
CUX1-216ENST00000558469 ZBTB3Q9H5J0 574 aa12.22□□□□□ -0.45
CUX1-216ENST00000558469 ANO8Q9HCE9 1232 aaPredicted RBP12.22□□□□□ -0.45
CUX1-216ENST00000558469 MAP3K2Q9Y2U5 619 aa12.22□□□□□ -0.45
CUX1-216ENST00000558469 ADCY9O60503 1353 aa12.21□□□□□ -0.45
CUX1-216ENST00000558469 RNF123Q5XPI4 1314 aa12.21□□□□□ -0.45
CUX1-216ENST00000558469 MAP3K15Q6ZN16 1313 aa12.21□□□□□ -0.45
CUX1-216ENST00000558469 SSFA2P28290 1259 aa12.21□□□□□ -0.45
CUX1-216ENST00000558469 RFC4P35249 363 aa12.21□□□□□ -0.45
CUX1-216ENST00000558469 SLC4A10Q6U841 1118 aa12.21□□□□□ -0.45
CUX1-216ENST00000558469 ZPR1O75312 459 aa12.2□□□□□ -0.46
CUX1-216ENST00000558469 MS4A1P11836 297 aa12.2□□□□□ -0.46
CUX1-216ENST00000558469 C20orf194Q5TEA3 1177 aa12.2□□□□□ -0.46
CUX1-216ENST00000558469 FTSJ3Q8IY81 847 aaKnown RBP12.2□□□□□ -0.46
CUX1-216ENST00000558469 DZIP1LQ8IYY4 767 aaKnown RBP12.2□□□□□ -0.46
CUX1-216ENST00000558469 DNAAF4Q8WXU2 420 aa12.2□□□□□ -0.46
CUX1-216ENST00000558469 NARFQ9UHQ1 456 aa12.2□□□□□ -0.46
CUX1-216ENST00000558469 PNPLA7Q6ZV29 1317 aa12.19□□□□□ -0.46
CUX1-216ENST00000558469 ERVV-1B6SEH8 477 aa12.19□□□□□ -0.46
CUX1-216ENST00000558469 CAMTA2O94983 1202 aa12.19□□□□□ -0.46
CUX1-216ENST00000558469 RLBP1P12271 317 aa12.19□□□□□ -0.46
CUX1-216ENST00000558469 HLFQ16534 295 aa12.19□□□□□ -0.46
CUX1-216ENST00000558469 USPL1Q5W0Q7 1092 aa12.19□□□□□ -0.46
CUX1-216ENST00000558469 GIGYF2Q6Y7W6 1299 aaKnown RBP12.19□□□□□ -0.46
CUX1-216ENST00000558469 COL23A1Q86Y22 540 aaPredicted RBP12.19□□□□□ -0.46
CUX1-216ENST00000558469 FLAD1Q8NFF5 587 aa12.19□□□□□ -0.46
CUX1-216ENST00000558469 PANK1Q8TE04 598 aa12.19□□□□□ -0.46
CUX1-216ENST00000558469 METTL22Q9BUU2 404 aaPredicted RBP12.19□□□□□ -0.46
CUX1-216ENST00000558469 SRP68Q9UHB9 627 aaKnown RBP12.19□□□□□ -0.46
CUX1-216ENST00000558469 ABCC4O15439 1325 aa12.18□□□□□ -0.46
CUX1-216ENST00000558469 USP42Q9H9J4 1324 aaKnown RBP12.18□□□□□ -0.46
CUX1-216ENST00000558469 IRX6P78412 446 aaPredicted RBP12.18□□□□□ -0.46
CUX1-216ENST00000558469 NEXNQ0ZGT2 675 aa12.18□□□□□ -0.46
CUX1-216ENST00000558469 PDE3AQ14432 1141 aa12.18□□□□□ -0.46
CUX1-216ENST00000558469 MYD88Q99836 296 aa12.18□□□□□ -0.46
CUX1-216ENST00000558469 PXDNLA1KZ92 1463 aa12.18□□□□□ -0.46
CUX1-216ENST00000558469 TMEM57Q8N5G2 664 aa12.17□□□□□ -0.46
CUX1-216ENST00000558469 ZNF652Q9Y2D9 606 aa12.17□□□□□ -0.46
CUX1-216ENST00000558469 ATP5J2-PTCD1G3V325 749 aa12.16□□□□□ -0.46
CUX1-216ENST00000558469 CCT4P50991 539 aaKnown RBP12.16□□□□□ -0.46
CUX1-216ENST00000558469 TCIRG1Q13488 830 aa12.16□□□□□ -0.46
CUX1-216ENST00000558469 CWF19L2Q2TBE0 894 aaKnown RBP12.16□□□□□ -0.46
CUX1-216ENST00000558469 BEND3Q5T5X7 828 aa12.16□□□□□ -0.46
CUX1-216ENST00000558469 INTS3Q68E01 1043 aaKnown RBP12.16□□□□□ -0.46
CUX1-216ENST00000558469 CLEC4GQ6UXB4 293 aa12.16□□□□□ -0.46
CUX1-216ENST00000558469 ITPRIPQ8IWB1 547 aa12.16□□□□□ -0.46
CUX1-216ENST00000558469 SRCIN1Q9C0H9 1055 aa12.16□□□□□ -0.46
CUX1-216ENST00000558469 BCL2L12Q9HB09 334 aa12.16□□□□□ -0.46
CUX1-216ENST00000558469 COG6Q9Y2V7 657 aa12.16□□□□□ -0.46
CUX1-216ENST00000558469 ATP10DQ9P241 1426 aa12.16□□□□□ -0.46
CUX1-216ENST00000558469 CASZ1Q86V15 1759 aa12.15□□□□□ -0.46
CUX1-216ENST00000558469 IGKV5-2P06315 115 aa12.15□□□□□ -0.46
CUX1-216ENST00000558469 GYS1P13807 737 aa12.15□□□□□ -0.46
CUX1-216ENST00000558469 GPTP24298 496 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms