RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 KLF15Q9UIH9 416 aa6.34□□□□□ -1.39
VPS13C-205ENST00000558088 TPCN2Q8NHX9 752 aa6.33□□□□□ -1.4
VPS13C-205ENST00000558088 ZDHHC1Q8WTX9 485 aa6.33□□□□□ -1.4
VPS13C-205ENST00000558088 ANKIB1Q9P2G1 1089 aa6.33□□□□□ -1.4
VPS13C-205ENST00000558088 EML1O00423 815 aa6.32□□□□□ -1.4
VPS13C-205ENST00000558088 SIN3BO75182 1162 aa6.32□□□□□ -1.4
VPS13C-205ENST00000558088 UBTFP17480 764 aaKnown RBP6.32□□□□□ -1.4
VPS13C-205ENST00000558088 CHRNA4P43681 627 aa6.32□□□□□ -1.4
VPS13C-205ENST00000558088 PSMA6P60900 246 aaKnown RBP6.32□□□□□ -1.4
VPS13C-205ENST00000558088 FLIIQ13045 1269 aa6.32□□□□□ -1.4
VPS13C-205ENST00000558088 TBCELQ5QJ74 424 aa6.32□□□□□ -1.4
VPS13C-205ENST00000558088 XP32Q5T750 250 aa6.32□□□□□ -1.4
VPS13C-205ENST00000558088 TNS4Q8IZW8 715 aa6.32□□□□□ -1.4
VPS13C-205ENST00000558088 STRN4Q9NRL3 753 aa6.32□□□□□ -1.4
VPS13C-205ENST00000558088 APBA3O96018 575 aa6.31□□□□□ -1.4
VPS13C-205ENST00000558088 GATA4P43694 442 aa6.31□□□□□ -1.4
VPS13C-205ENST00000558088 CCDC102BQ68D86 513 aa6.31□□□□□ -1.4
VPS13C-205ENST00000558088 TRIM11Q96F44 468 aa6.31□□□□□ -1.4
VPS13C-205ENST00000558088 HCN2Q9UL51 889 aa6.31□□□□□ -1.4
VPS13C-205ENST00000558088 USP17L3A6NCW0 530 aa6.3□□□□□ -1.4
VPS13C-205ENST00000558088 USP17L4A6NCW7 530 aa6.3□□□□□ -1.4
VPS13C-205ENST00000558088 ADARB2-AS1A8MUL3 147 aa6.3□□□□□ -1.4
VPS13C-205ENST00000558088 EPHA4P54764 986 aa6.3□□□□□ -1.4
VPS13C-205ENST00000558088 C1orf53Q5VUE5 145 aa6.3□□□□□ -1.4
VPS13C-205ENST00000558088 USP17L2Q6R6M4 530 aa6.3□□□□□ -1.4
VPS13C-205ENST00000558088 USP17L1Q7RTZ2 530 aa6.3□□□□□ -1.4
VPS13C-205ENST00000558088 PLEKHM2Q8IWE5 1019 aa6.3□□□□□ -1.4
VPS13C-205ENST00000558088 CEP63Q96MT8 703 aa6.3□□□□□ -1.4
VPS13C-205ENST00000558088 PALM3A6NDB9 673 aaPredicted RBP6.29□□□□□ -1.4
VPS13C-205ENST00000558088 SPEM2Q0P670 501 aa6.29□□□□□ -1.4
VPS13C-205ENST00000558088 LARGE2Q8N3Y3 721 aa6.29□□□□□ -1.4
VPS13C-205ENST00000558088 POM121Q96HA1 1249 aa6.29□□□□□ -1.4
VPS13C-205ENST00000558088 NACC1Q96RE7 527 aa6.29□□□□□ -1.4
VPS13C-205ENST00000558088 BRD7Q9NPI1 651 aa6.29□□□□□ -1.4
VPS13C-205ENST00000558088 M0R082 166 aa6.28□□□□□ -1.4
VPS13C-205ENST00000558088 ATP9BO43861 1147 aa6.28□□□□□ -1.4
VPS13C-205ENST00000558088 HIRAP54198 1017 aaPredicted RBP6.28□□□□□ -1.4
VPS13C-205ENST00000558088 SFSWAPQ12872 951 aaKnown RBP6.28□□□□□ -1.4
VPS13C-205ENST00000558088 DOC2BQ14184 412 aa6.28□□□□□ -1.4
VPS13C-205ENST00000558088 HIF1AQ16665 826 aa6.28□□□□□ -1.4
VPS13C-205ENST00000558088 OGFOD1Q8N543 542 aa6.28□□□□□ -1.4
VPS13C-205ENST00000558088 ZNF417Q8TAU3 575 aa6.28□□□□□ -1.4
VPS13C-205ENST00000558088 TNFRSF25Q93038 417 aa6.28□□□□□ -1.4
VPS13C-205ENST00000558088 ZNF587Q96SQ5 575 aaPredicted RBP6.28□□□□□ -1.4
VPS13C-205ENST00000558088 TSPAN10Q9H1Z9 355 aaPredicted RBP6.28□□□□□ -1.4
VPS13C-205ENST00000558088 SEMA6BQ9H3T3 888 aa6.28□□□□□ -1.4
VPS13C-205ENST00000558088 M0R2N6 131 aa6.27□□□□□ -1.41
VPS13C-205ENST00000558088 PPP1R12BO60237 982 aaPredicted RBP6.27□□□□□ -1.41
VPS13C-205ENST00000558088 ADH7P40394 386 aa6.27□□□□□ -1.41
VPS13C-205ENST00000558088 TRIM28Q13263 835 aaKnown RBP6.27□□□□□ -1.41
VPS13C-205ENST00000558088 HDGFL1Q5TGJ6 251 aa6.27□□□□□ -1.41
VPS13C-205ENST00000558088 Q8N3U1 123 aa6.27□□□□□ -1.41
VPS13C-205ENST00000558088 PHACTR1Q9C0D0 580 aa6.27□□□□□ -1.41
VPS13C-205ENST00000558088 PRDM6Q9NQX0 595 aa6.27□□□□□ -1.41
VPS13C-205ENST00000558088 MKRN1Q9UHC7 482 aaKnown RBP6.27□□□□□ -1.41
VPS13C-205ENST00000558088 KCNH4Q9UQ05 1017 aa6.27□□□□□ -1.41
VPS13C-205ENST00000558088 HCN4Q9Y3Q4 1203 aa6.27□□□□□ -1.41
VPS13C-205ENST00000558088 SFI1A8K8P3 1242 aa6.26□□□□□ -1.41
VPS13C-205ENST00000558088 CLDN10P78369 228 aa6.26□□□□□ -1.41
VPS13C-205ENST00000558088 SH3PXD2AQ5TCZ1 1133 aa6.26□□□□□ -1.41
VPS13C-205ENST00000558088 ZNF594Q96JF6 807 aaPredicted RBP6.26□□□□□ -1.41
VPS13C-205ENST00000558088 HSH2DQ96JZ2 352 aa6.26□□□□□ -1.41
VPS13C-205ENST00000558088 SLC30A3Q99726 388 aa6.26□□□□□ -1.41
VPS13C-205ENST00000558088 KIAA1024Q9UPX6 916 aa6.26□□□□□ -1.41
VPS13C-205ENST00000558088 POM121CA8CG34 1229 aa6.25□□□□□ -1.41
VPS13C-205ENST00000558088 ZBTB7BO15156 539 aaPredicted RBP6.25□□□□□ -1.41
VPS13C-205ENST00000558088 KCNQ4P56696 695 aa6.25□□□□□ -1.41
VPS13C-205ENST00000558088 TBC1D8BQ0IIM8 1120 aa6.25□□□□□ -1.41
VPS13C-205ENST00000558088 RAB44Q7Z6P3 723 aaPredicted RBP6.25□□□□□ -1.41
VPS13C-205ENST00000558088 MDFIQ99750 246 aa6.25□□□□□ -1.41
VPS13C-205ENST00000558088 LILRB5O75023 590 aa6.24□□□□□ -1.41
VPS13C-205ENST00000558088 ALBP02768 609 aa6.24□□□□□ -1.41
VPS13C-205ENST00000558088 TYRO3Q06418 890 aa6.24□□□□□ -1.41
VPS13C-205ENST00000558088 SIX5Q8N196 739 aa6.24□□□□□ -1.41
VPS13C-205ENST00000558088 MICALL1Q8N3F8 863 aa6.24□□□□□ -1.41
VPS13C-205ENST00000558088 TSEN2Q8NCE0 465 aaKnown RBP6.24□□□□□ -1.41
VPS13C-205ENST00000558088 C7orf43Q8WVR3 580 aa6.24□□□□□ -1.41
VPS13C-205ENST00000558088 BHMTQ93088 406 aa6.24□□□□□ -1.41
VPS13C-205ENST00000558088 SUSD3Q96L08 255 aa6.24□□□□□ -1.41
VPS13C-205ENST00000558088 RASA1P20936 1047 aa6.23□□□□□ -1.41
VPS13C-205ENST00000558088 ZMYM1Q5SVZ6 1142 aa6.23□□□□□ -1.41
VPS13C-205ENST00000558088 TRAPPC3LQ5T215 181 aa6.23□□□□□ -1.41
VPS13C-205ENST00000558088 GAS2L2Q8NHY3 880 aa6.23□□□□□ -1.41
VPS13C-205ENST00000558088 ADAMTS19Q8TE59 1207 aa6.23□□□□□ -1.41
VPS13C-205ENST00000558088 PNMA5Q96PV4 448 aa6.23□□□□□ -1.41
VPS13C-205ENST00000558088 UCN2Q96RP3 112 aa6.23□□□□□ -1.41
VPS13C-205ENST00000558088 UBE2OQ9C0C9 1292 aaKnown RBP6.23□□□□□ -1.41
VPS13C-205ENST00000558088 IGFLR1Q9H665 355 aa6.23□□□□□ -1.41
VPS13C-205ENST00000558088 EFCC1Q9HA90 598 aa6.23□□□□□ -1.41
VPS13C-205ENST00000558088 FAM229AH3BQW9 127 aa6.22□□□□□ -1.41
VPS13C-205ENST00000558088 SEC13P55735 322 aa6.22□□□□□ -1.41
VPS13C-205ENST00000558088 RAC1P63000 192 aa6.22□□□□□ -1.41
VPS13C-205ENST00000558088 LARP1Q6PKG0 1096 aaKnown RBP6.22□□□□□ -1.41
VPS13C-205ENST00000558088 POTEAQ6S8J7 498 aa6.22□□□□□ -1.41
VPS13C-205ENST00000558088 BTLAQ7Z6A9 289 aa6.22□□□□□ -1.41
VPS13C-205ENST00000558088 ALDH16A1Q8IZ83 802 aa6.22□□□□□ -1.41
VPS13C-205ENST00000558088 STAG2Q8N3U4 1231 aa6.22□□□□□ -1.41
VPS13C-205ENST00000558088 ZNF280CQ8ND82 737 aa6.22□□□□□ -1.41
VPS13C-205ENST00000558088 CHMP7Q8WUX9 453 aaPredicted RBP6.22□□□□□ -1.41
VPS13C-205ENST00000558088 SCG3Q8WXD2 468 aaKnown RBP6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms