RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 HCLS1P14317 486 aaPredicted RBP19.47■□□□□ 0.71
SHMT2-231ENST00000557433 BEND3Q5T5X7 828 aa19.47■□□□□ 0.71
SHMT2-231ENST00000557433 RASEFQ8IZ41 740 aa19.47■□□□□ 0.71
SHMT2-231ENST00000557433 NECTIN2Q92692 538 aa19.47■□□□□ 0.71
SHMT2-231ENST00000557433 PDRG1Q9NUG6 133 aa19.47■□□□□ 0.71
SHMT2-231ENST00000557433 CYP46A1Q9Y6A2 500 aa19.47■□□□□ 0.71
SHMT2-231ENST00000557433 EID1Q9Y6B2 187 aa19.47■□□□□ 0.71
SHMT2-231ENST00000557433 CCDC171Q6TFL3 1326 aa19.46■□□□□ 0.71
SHMT2-231ENST00000557433 NUTM2FA1L443 756 aa19.46■□□□□ 0.71
SHMT2-231ENST00000557433 SMAP1Q8IYB5 467 aaPredicted RBP19.46■□□□□ 0.71
SHMT2-231ENST00000557433 CLASRPQ8N2M8 674 aaKnown RBP19.46■□□□□ 0.71
SHMT2-231ENST00000557433 MTMR6Q9Y217 621 aa19.46■□□□□ 0.71
SHMT2-231ENST00000557433 CHD2O14647 1828 aaKnown RBP19.45■□□□□ 0.7
SHMT2-231ENST00000557433 CASTP20810 708 aaKnown RBP19.45■□□□□ 0.7
SHMT2-231ENST00000557433 FOXD4L6Q3SYB3 417 aaPredicted RBP19.45■□□□□ 0.7
SHMT2-231ENST00000557433 FOXD4L3Q6VB84 417 aaPredicted RBP19.45■□□□□ 0.7
SHMT2-231ENST00000557433 TCHHQ07283 1943 aa19.45■□□□□ 0.7
SHMT2-231ENST00000557433 CCDC192P0DO97 292 aa19.45■□□□□ 0.7
SHMT2-231ENST00000557433 ZKSCAN1P17029 563 aaPredicted RBP19.45■□□□□ 0.7
SHMT2-231ENST00000557433 PDCP20941 246 aa19.45■□□□□ 0.7
SHMT2-231ENST00000557433 NLRP6P59044 892 aa19.45■□□□□ 0.7
SHMT2-231ENST00000557433 CWC27Q6UX04 472 aaKnown RBP19.45■□□□□ 0.7
SHMT2-231ENST00000557433 PHAXQ9H814 394 aaKnown RBP19.45■□□□□ 0.7
SHMT2-231ENST00000557433 ECHDC1Q9NTX5 307 aa19.45■□□□□ 0.7
SHMT2-231ENST00000557433 ELP1O95163 1332 aa19.45■□□□□ 0.7
SHMT2-231ENST00000557433 FIBPO43427 364 aa19.44■□□□□ 0.7
SHMT2-231ENST00000557433 ALDH1L1O75891 902 aa19.44■□□□□ 0.7
SHMT2-231ENST00000557433 GJB2P29033 226 aa19.44■□□□□ 0.7
SHMT2-231ENST00000557433 LTKP29376 864 aa19.44■□□□□ 0.7
SHMT2-231ENST00000557433 EVI5LQ96CN4 794 aa19.44■□□□□ 0.7
SHMT2-231ENST00000557433 AMOTL2Q9Y2J4 779 aa19.44■□□□□ 0.7
SHMT2-231ENST00000557433 SLIT1O75093 1534 aa19.44■□□□□ 0.7
SHMT2-231ENST00000557433 EIF4A1P60842 406 aaKnown RBP19.43■□□□□ 0.7
SHMT2-231ENST00000557433 CCDC94Q9BW85 323 aaPredicted RBP19.43■□□□□ 0.7
SHMT2-231ENST00000557433 ADGRL3Q9HAR2 1447 aa19.43■□□□□ 0.7
SHMT2-231ENST00000557433 MAP4K4O95819 1239 aaPredicted RBP19.43■□□□□ 0.7
SHMT2-231ENST00000557433 PSMA5P28066 241 aa19.43■□□□□ 0.7
SHMT2-231ENST00000557433 SNRKQ9NRH2 765 aa19.43■□□□□ 0.7
SHMT2-231ENST00000557433 ARHGAP23Q9P227 1491 aa19.43■□□□□ 0.7
SHMT2-231ENST00000557433 KDM3BQ7LBC6 1761 aa19.43■□□□□ 0.7
SHMT2-231ENST00000557433 OS9Q13438 667 aaPredicted RBP19.42■□□□□ 0.7
SHMT2-231ENST00000557433 ANKRD1Q15327 319 aa19.42■□□□□ 0.7
SHMT2-231ENST00000557433 JAKMIP1Q96N16 626 aaKnown RBP19.42■□□□□ 0.7
SHMT2-231ENST00000557433 ALDH8A1Q9H2A2 487 aaPredicted RBP19.42■□□□□ 0.7
SHMT2-231ENST00000557433 MARF1Q9Y4F3 1742 aaKnown RBP19.42■□□□□ 0.7
SHMT2-231ENST00000557433 NBPF7P0C2Y1 421 aaPredicted RBP19.41■□□□□ 0.7
SHMT2-231ENST00000557433 KRT85P78386 507 aa19.41■□□□□ 0.7
SHMT2-231ENST00000557433 CHAF1AQ13111 956 aaPredicted RBP19.41■□□□□ 0.7
SHMT2-231ENST00000557433 NECTIN1Q15223 517 aa19.41■□□□□ 0.7
SHMT2-231ENST00000557433 CCDC83Q8IWF9 413 aa19.41■□□□□ 0.7
SHMT2-231ENST00000557433 KIF3AQ9Y496 699 aa19.41■□□□□ 0.7
SHMT2-231ENST00000557433 DNM1Q05193 864 aaKnown RBP19.4■□□□□ 0.7
SHMT2-231ENST00000557433 KIAA1524Q8TCG1 905 aa19.4■□□□□ 0.7
SHMT2-231ENST00000557433 TTC12Q9H892 705 aaPredicted RBP19.4■□□□□ 0.7
SHMT2-231ENST00000557433 SPG7Q9UQ90 795 aa19.4■□□□□ 0.7
SHMT2-231ENST00000557433 PI4KAP2A4QPH2 592 aa19.39■□□□□ 0.7
SHMT2-231ENST00000557433 PI4KAP1Q8N8J0 262 aa19.39■□□□□ 0.7
SHMT2-231ENST00000557433 FAM200AQ8TCP9 573 aa19.39■□□□□ 0.7
SHMT2-231ENST00000557433 IFIT2P09913 472 aaKnown RBP19.39■□□□□ 0.69
SHMT2-231ENST00000557433 GIMAP6Q6P9H5 292 aa19.39■□□□□ 0.69
SHMT2-231ENST00000557433 OVOS2A0A0G2JMS6 1433 aa19.38■□□□□ 0.69
SHMT2-231ENST00000557433 LARGE1O95461 756 aa19.38■□□□□ 0.69
SHMT2-231ENST00000557433 RNF20Q5VTR2 975 aa19.38■□□□□ 0.69
SHMT2-231ENST00000557433 PRPF40BQ6NWY9 871 aaKnown RBP19.38■□□□□ 0.69
SHMT2-231ENST00000557433 SCAND2PQ9GZW5 306 aaPredicted RBP19.38■□□□□ 0.69
SHMT2-231ENST00000557433 CHPF2Q9P2E5 772 aa19.38■□□□□ 0.69
SHMT2-231ENST00000557433 DBF4Q9UBU7 674 aaPredicted RBP19.38■□□□□ 0.69
SHMT2-231ENST00000557433 MAP3K11Q16584 847 aa19.37■□□□□ 0.69
SHMT2-231ENST00000557433 MAP4K1Q92918 833 aa19.37■□□□□ 0.69
SHMT2-231ENST00000557433 NCAPD2Q15021 1401 aa19.37■□□□□ 0.69
SHMT2-231ENST00000557433 ADCY9O60503 1353 aa19.37■□□□□ 0.69
SHMT2-231ENST00000557433 PTH1RQ03431 593 aa19.37■□□□□ 0.69
SHMT2-231ENST00000557433 ZNF830Q96NB3 372 aaPredicted RBP19.37■□□□□ 0.69
SHMT2-231ENST00000557433 SLC26A8Q96RN1 970 aa19.37■□□□□ 0.69
SHMT2-231ENST00000557433 RGPD8O14715 1765 aaPredicted RBP19.36■□□□□ 0.69
SHMT2-231ENST00000557433 CAVIN2O95810 425 aa19.36■□□□□ 0.69
SHMT2-231ENST00000557433 EIF2S2P20042 333 aaKnown RBP19.36■□□□□ 0.69
SHMT2-231ENST00000557433 LARP1BQ659C4 914 aaKnown RBP19.36■□□□□ 0.69
SHMT2-231ENST00000557433 CREB3L3Q68CJ9 461 aa19.36■□□□□ 0.69
SHMT2-231ENST00000557433 NUP62CLQ9H1M0 184 aa19.36■□□□□ 0.69
SHMT2-231ENST00000557433 DDX19AQ9NUU7 478 aaKnown RBP19.36■□□□□ 0.69
SHMT2-231ENST00000557433 LMO7Q8WWI1 1683 aa19.36■□□□□ 0.69
SHMT2-231ENST00000557433 VPS37CA5D8V6 355 aaPredicted RBP19.35■□□□□ 0.69
SHMT2-231ENST00000557433 ME3Q16798 604 aa19.35■□□□□ 0.69
SHMT2-231ENST00000557433 IP6K1Q92551 441 aa19.35■□□□□ 0.69
SHMT2-231ENST00000557433 HMG20BQ9P0W2 317 aa19.35■□□□□ 0.69
SHMT2-231ENST00000557433 RBM8AQ9Y5S9 174 aaKnown RBP19.35■□□□□ 0.69
SHMT2-231ENST00000557433 ADCK5Q3MIX3 580 aa19.35■□□□□ 0.69
SHMT2-231ENST00000557433 ARHGAP30Q7Z6I6 1101 aaPredicted RBP19.35■□□□□ 0.69
SHMT2-231ENST00000557433 TSGA10IPQ3SY00 556 aa19.34■□□□□ 0.69
SHMT2-231ENST00000557433 AKAP4Q5JQC9 854 aa19.34■□□□□ 0.69
SHMT2-231ENST00000557433 C9orf78Q9NZ63 289 aaPredicted RBP19.34■□□□□ 0.69
SHMT2-231ENST00000557433 NPHP3Q7Z494 1330 aa19.34■□□□□ 0.69
SHMT2-231ENST00000557433 ST3GAL1Q11201 340 aa19.33■□□□□ 0.69
SHMT2-231ENST00000557433 KSR2Q6VAB6 950 aa19.33■□□□□ 0.69
SHMT2-231ENST00000557433 ABTB2Q8N961 1025 aa19.33■□□□□ 0.69
SHMT2-231ENST00000557433 UTYO14607 1347 aa19.33■□□□□ 0.69
SHMT2-231ENST00000557433 KCNJ4P48050 445 aa19.33■□□□□ 0.68
SHMT2-231ENST00000557433 TEFQ10587 303 aa19.33■□□□□ 0.68
SHMT2-231ENST00000557433 RBM43Q6ZSC3 357 aaKnown RBP19.33■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms