RNA–Protein interactions for RNA: ENST00000557422.1

RTN1-208, Transcript of reticulon 1, humanhuman

TSL 3

Gene RTN1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN1-208ENST00000557422 C7orf43Q8WVR3 580 aa16.52■□□□□ 0.24
RTN1-208ENST00000557422 MASTLQ96GX5 879 aa16.52■□□□□ 0.24
RTN1-208ENST00000557422 CACNA1SQ13698 1873 aa16.51■□□□□ 0.23
RTN1-208ENST00000557422 NPHP1O15259 732 aa16.51■□□□□ 0.23
RTN1-208ENST00000557422 ST5P78524 1137 aa16.51■□□□□ 0.23
RTN1-208ENST00000557422 IL17REQ8NFR9 667 aa16.51■□□□□ 0.23
RTN1-208ENST00000557422 WBP1LQ9NX94 342 aa16.51■□□□□ 0.23
RTN1-208ENST00000557422 SCN4AP35499 1836 aa16.51■□□□□ 0.23
RTN1-208ENST00000557422 DIAPH1O60610 1272 aaKnown RBP16.5■□□□□ 0.23
RTN1-208ENST00000557422 TEFQ10587 303 aa16.5■□□□□ 0.23
RTN1-208ENST00000557422 ARFGEF2Q9Y6D5 1785 aa16.49■□□□□ 0.23
RTN1-208ENST00000557422 LBX1P52954 281 aa16.49■□□□□ 0.23
RTN1-208ENST00000557422 EAPPQ56P03 285 aaPredicted RBP16.49■□□□□ 0.23
RTN1-208ENST00000557422 CCDC93Q567U6 631 aa16.48■□□□□ 0.23
RTN1-208ENST00000557422 NPM2Q86SE8 214 aaKnown RBP16.48■□□□□ 0.23
RTN1-208ENST00000557422 FMNL2Q96PY5 1086 aa16.48■□□□□ 0.23
RTN1-208ENST00000557422 HACL1Q9UJ83 578 aa16.48■□□□□ 0.23
RTN1-208ENST00000557422 ZNF541Q9H0D2 1346 aa16.47■□□□□ 0.23
RTN1-208ENST00000557422 GNAT3A8MTJ3 354 aa16.47■□□□□ 0.23
RTN1-208ENST00000557422 DZIP3Q86Y13 1208 aaKnown RBP16.47■□□□□ 0.23
RTN1-208ENST00000557422 ZNF277Q9NRM2 450 aaPredicted RBP16.47■□□□□ 0.23
RTN1-208ENST00000557422 CLEC11AQ9Y240 323 aa16.47■□□□□ 0.23
RTN1-208ENST00000557422 RASSF10A6NK89 507 aa16.46■□□□□ 0.23
RTN1-208ENST00000557422 NPR1P16066 1061 aa16.46■□□□□ 0.23
RTN1-208ENST00000557422 EPHX2P34913 555 aa16.46■□□□□ 0.23
RTN1-208ENST00000557422 FKBP4Q02790 459 aaKnown RBP eCLIP16.46■□□□□ 0.23
RTN1-208ENST00000557422 TRIM26Q12899 539 aaPredicted RBP16.46■□□□□ 0.23
RTN1-208ENST00000557422 NBPF5PQ86XG9 351 aaPredicted RBP16.46■□□□□ 0.23
RTN1-208ENST00000557422 SIPA1L3O60292 1781 aaPredicted RBP16.46■□□□□ 0.22
RTN1-208ENST00000557422 KLRG2A4D1S0 409 aaPredicted RBP16.45■□□□□ 0.22
RTN1-208ENST00000557422 KCNQ3O43525 872 aa16.45■□□□□ 0.22
RTN1-208ENST00000557422 SLC34A2O95436 690 aa16.45■□□□□ 0.22
RTN1-208ENST00000557422 HSPA8P11142 646 aaKnown RBP16.45■□□□□ 0.22
RTN1-208ENST00000557422 DEFB115Q30KQ5 88 aa16.45■□□□□ 0.22
RTN1-208ENST00000557422 OLFM4Q6UX06 510 aa16.45■□□□□ 0.22
RTN1-208ENST00000557422 CNTROBQ8N137 903 aa16.45■□□□□ 0.22
RTN1-208ENST00000557422 ABHD8Q96I13 439 aa16.45■□□□□ 0.22
RTN1-208ENST00000557422 CLSPNQ9HAW4 1339 aa16.45■□□□□ 0.22
RTN1-208ENST00000557422 BCORQ6W2J9 1755 aa16.44■□□□□ 0.22
RTN1-208ENST00000557422 ADAMTSL1Q8N6G6 1762 aa16.44■□□□□ 0.22
RTN1-208ENST00000557422 PIP4K2AP48426 406 aaPredicted RBP16.44■□□□□ 0.22
RTN1-208ENST00000557422 MAP1SQ66K74 1059 aaPredicted RBP16.44■□□□□ 0.22
RTN1-208ENST00000557422 CLEC4GQ6UXB4 293 aa16.44■□□□□ 0.22
RTN1-208ENST00000557422 PNMA8AQ86V59 439 aaPredicted RBP16.44■□□□□ 0.22
RTN1-208ENST00000557422 RTKN2Q8IZC4 609 aa16.44■□□□□ 0.22
RTN1-208ENST00000557422 GAS2L2Q8NHY3 880 aa16.44■□□□□ 0.22
RTN1-208ENST00000557422 USP16Q9Y5T5 823 aa16.44■□□□□ 0.22
RTN1-208ENST00000557422 WDR33Q9C0J8 1336 aaKnown RBP16.43■□□□□ 0.22
RTN1-208ENST00000557422 CEMIPQ8WUJ3 1361 aa16.42■□□□□ 0.22
RTN1-208ENST00000557422 BTBD11A6QL63 1104 aa16.42■□□□□ 0.22
RTN1-208ENST00000557422 FZD9O00144 591 aa16.42■□□□□ 0.22
RTN1-208ENST00000557422 U2SURPO15042 1029 aaKnown RBP16.42■□□□□ 0.22
RTN1-208ENST00000557422 MAP2K1Q02750 393 aaPredicted RBP16.42■□□□□ 0.22
RTN1-208ENST00000557422 ZNF652Q9Y2D9 606 aa16.42■□□□□ 0.22
RTN1-208ENST00000557422 RNF123Q5XPI4 1314 aa16.42■□□□□ 0.22
RTN1-208ENST00000557422 PER1O15534 1290 aaPredicted RBP16.41■□□□□ 0.22
RTN1-208ENST00000557422 IARSP41252 1262 aaKnown RBP16.41■□□□□ 0.22
RTN1-208ENST00000557422 CC2D1BQ5T0F9 858 aaKnown RBP16.41■□□□□ 0.22
RTN1-208ENST00000557422 TPTE2Q6XPS3 522 aa16.41■□□□□ 0.22
RTN1-208ENST00000557422 SYNE4Q8N205 404 aa16.41■□□□□ 0.22
RTN1-208ENST00000557422 PRAMEF22A3QJZ6 481 aa16.4■□□□□ 0.22
RTN1-208ENST00000557422 FAM161AQ3B820 660 aa16.4■□□□□ 0.22
RTN1-208ENST00000557422 GPC2Q8N158 579 aa16.4■□□□□ 0.22
RTN1-208ENST00000557422 ABT1Q9ULW3 272 aaKnown RBP16.4■□□□□ 0.22
RTN1-208ENST00000557422 NIP7Q9Y221 180 aaKnown RBP eCLIP16.4■□□□□ 0.22
RTN1-208ENST00000557422 COL3A1P02461 1466 aaPredicted RBP16.4■□□□□ 0.22
RTN1-208ENST00000557422 ALDH1B1P30837 517 aa16.39■□□□□ 0.21
RTN1-208ENST00000557422 FAM177BA6PVY3 158 aa16.38■□□□□ 0.21
RTN1-208ENST00000557422 RGL2O15211 777 aa16.38■□□□□ 0.21
RTN1-208ENST00000557422 PHACTR3Q96KR7 559 aa16.38■□□□□ 0.21
RTN1-208ENST00000557422 PCGF6Q9BYE7 350 aa16.38■□□□□ 0.21
RTN1-208ENST00000557422 DDX21Q9NR30 783 aaKnown RBP eCLIP16.38■□□□□ 0.21
RTN1-208ENST00000557422 KIF7Q2M1P5 1343 aa16.38■□□□□ 0.21
RTN1-208ENST00000557422 NBPF26B4DH59 902 aa16.37■□□□□ 0.21
RTN1-208ENST00000557422 SNRPA1P09661 255 aaKnown RBP16.37■□□□□ 0.21
RTN1-208ENST00000557422 NBPF10Q6P3W6 841 aaKnown RBP16.37■□□□□ 0.21
RTN1-208ENST00000557422 NBPF15Q8N660 670 aa16.37■□□□□ 0.21
RTN1-208ENST00000557422 JDP2Q8WYK2 163 aa16.37■□□□□ 0.21
RTN1-208ENST00000557422 PSMD1Q99460 953 aa16.37■□□□□ 0.21
RTN1-208ENST00000557422 SNED1Q8TER0 1413 aa16.36■□□□□ 0.21
RTN1-208ENST00000557422 FMR1Q06787 632 aaKnown RBP eCLIP16.36■□□□□ 0.21
RTN1-208ENST00000557422 CAPNS2Q96L46 248 aa16.36■□□□□ 0.21
RTN1-208ENST00000557422 GJA3Q9Y6H8 435 aa16.36■□□□□ 0.21
RTN1-208ENST00000557422 EIF6P56537 245 aaKnown RBP16.35■□□□□ 0.21
RTN1-208ENST00000557422 LTBP1Q14766 1721 aa16.34■□□□□ 0.21
RTN1-208ENST00000557422 CCDC85CA6NKD9 419 aa16.34■□□□□ 0.21
RTN1-208ENST00000557422 GTF2E1P29083 439 aaPredicted RBP16.34■□□□□ 0.21
RTN1-208ENST00000557422 LMOD1P29536 600 aaPredicted RBP16.34■□□□□ 0.21
RTN1-208ENST00000557422 PRKAR2BP31323 418 aa16.34■□□□□ 0.21
RTN1-208ENST00000557422 EPS15P42566 896 aa16.34■□□□□ 0.21
RTN1-208ENST00000557422 RGS19P49795 217 aa16.34■□□□□ 0.21
RTN1-208ENST00000557422 HLFQ16534 295 aa16.34■□□□□ 0.21
RTN1-208ENST00000557422 CRY2Q49AN0 593 aa16.34■□□□□ 0.21
RTN1-208ENST00000557422 GPR101Q96P66 508 aaPredicted RBP16.34■□□□□ 0.21
RTN1-208ENST00000557422 COL4A5P29400 1685 aa16.34■□□□□ 0.21
RTN1-208ENST00000557422 ECE1P42892 770 aa16.33■□□□□ 0.2
RTN1-208ENST00000557422 SCNN1DP51172 638 aa16.33■□□□□ 0.2
RTN1-208ENST00000557422 MLLT1Q03111 559 aaPredicted RBP16.33■□□□□ 0.2
RTN1-208ENST00000557422 CST9Q5W186 159 aa16.33■□□□□ 0.2
RTN1-208ENST00000557422 CC2D2BQ6DHV5 1058 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms