RNA–Protein interactions for RNA: ENST00000555259.5

SCFD1-215, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,553 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-215ENST00000555259 CNTROBQ8N137 903 aa13.2□□□□□ -0.3
SCFD1-215ENST00000555259 CNBD1Q8NA66 436 aa13.2□□□□□ -0.3
SCFD1-215ENST00000555259 MASTLQ96GX5 879 aa13.2□□□□□ -0.3
SCFD1-215ENST00000555259 POLR3GLQ9BT43 218 aa13.2□□□□□ -0.3
SCFD1-215ENST00000555259 CACNA1SQ13698 1873 aa13.19□□□□□ -0.3
SCFD1-215ENST00000555259 UBR2Q8IWV8 1755 aa13.19□□□□□ -0.3
SCFD1-215ENST00000555259 ARFGEF2Q9Y6D5 1785 aa13.19□□□□□ -0.3
SCFD1-215ENST00000555259 MAP1SQ66K74 1059 aaPredicted RBP13.19□□□□□ -0.3
SCFD1-215ENST00000555259 C7orf43Q8WVR3 580 aa13.19□□□□□ -0.3
SCFD1-215ENST00000555259 ABT1Q9ULW3 272 aaKnown RBP13.19□□□□□ -0.3
SCFD1-215ENST00000555259 TBC1D2BQ9UPU7 963 aa13.19□□□□□ -0.3
SCFD1-215ENST00000555259 NPHP1O15259 732 aa13.18□□□□□ -0.3
SCFD1-215ENST00000555259 ST5P78524 1137 aa13.18□□□□□ -0.3
SCFD1-215ENST00000555259 CCDC93Q567U6 631 aa13.18□□□□□ -0.3
SCFD1-215ENST00000555259 PNMA8AQ86V59 439 aaPredicted RBP13.18□□□□□ -0.3
SCFD1-215ENST00000555259 SETDB2Q96T68 719 aa13.18□□□□□ -0.3
SCFD1-215ENST00000555259 RNF123Q5XPI4 1314 aa13.17□□□□□ -0.3
SCFD1-215ENST00000555259 ZNF277Q9NRM2 450 aaPredicted RBP13.17□□□□□ -0.3
SCFD1-215ENST00000555259 ZNF330Q9Y3S2 320 aaPredicted RBP13.17□□□□□ -0.3
SCFD1-215ENST00000555259 IL6STP40189 918 aaPredicted RBP13.16□□□□□ -0.3
SCFD1-215ENST00000555259 FKBP4Q02790 459 aaKnown RBP eCLIP13.16□□□□□ -0.3
SCFD1-215ENST00000555259 MORC1Q86VD1 984 aa13.16□□□□□ -0.3
SCFD1-215ENST00000555259 TTC5Q8N0Z6 440 aa13.16□□□□□ -0.3
SCFD1-215ENST00000555259 THSD7BQ9C0I4 1608 aa13.16□□□□□ -0.3
SCFD1-215ENST00000555259 CAMTA2O94983 1202 aa13.15□□□□□ -0.3
SCFD1-215ENST00000555259 MTHFSDQ2M296 383 aaKnown RBP13.15□□□□□ -0.3
SCFD1-215ENST00000555259 ZNF496Q96IT1 587 aaPredicted RBP13.15□□□□□ -0.3
SCFD1-215ENST00000555259 BEGAINQ9BUH8 593 aa13.15□□□□□ -0.3
SCFD1-215ENST00000555259 PANK3Q9H999 370 aa13.15□□□□□ -0.3
SCFD1-215ENST00000555259 TNRC18O15417 2968 aaPredicted RBP13.15□□□□□ -0.3
SCFD1-215ENST00000555259 CAPNS2Q96L46 248 aa13.15□□□□□ -0.3
SCFD1-215ENST00000555259 DDX21Q9NR30 783 aaKnown RBP eCLIP13.15□□□□□ -0.3
SCFD1-215ENST00000555259 HEG1Q9ULI3 1381 aa13.14□□□□□ -0.31
SCFD1-215ENST00000555259 FZD9O00144 591 aa13.14□□□□□ -0.31
SCFD1-215ENST00000555259 HMOX1P09601 288 aa13.14□□□□□ -0.31
SCFD1-215ENST00000555259 OLFM4Q6UX06 510 aa13.14□□□□□ -0.31
SCFD1-215ENST00000555259 GPC2Q8N158 579 aa13.14□□□□□ -0.31
SCFD1-215ENST00000555259 GPR101Q96P66 508 aaPredicted RBP13.14□□□□□ -0.31
SCFD1-215ENST00000555259 TEX13AQ9BXU3 409 aaPredicted RBP13.14□□□□□ -0.31
SCFD1-215ENST00000555259 NPR1P16066 1061 aa13.13□□□□□ -0.31
SCFD1-215ENST00000555259 ECE1P42892 770 aa13.13□□□□□ -0.31
SCFD1-215ENST00000555259 PAXIP1Q6ZW49 1069 aaPredicted RBP13.13□□□□□ -0.31
SCFD1-215ENST00000555259 A1BGP04217 495 aa13.12□□□□□ -0.31
SCFD1-215ENST00000555259 IARSP41252 1262 aaKnown RBP13.12□□□□□ -0.31
SCFD1-215ENST00000555259 FMR1Q06787 632 aaKnown RBP eCLIP13.12□□□□□ -0.31
SCFD1-215ENST00000555259 GRM1Q13255 1194 aa13.12□□□□□ -0.31
SCFD1-215ENST00000555259 CYP4F22Q6NT55 531 aa13.12□□□□□ -0.31
SCFD1-215ENST00000555259 ZNF790Q6PG37 636 aa13.12□□□□□ -0.31
SCFD1-215ENST00000555259 NPM2Q86SE8 214 aaKnown RBP13.12□□□□□ -0.31
SCFD1-215ENST00000555259 RTKN2Q8IZC4 609 aa13.12□□□□□ -0.31
SCFD1-215ENST00000555259 TSKSQ9UJT2 592 aa13.12□□□□□ -0.31
SCFD1-215ENST00000555259 KLRG2A4D1S0 409 aaPredicted RBP13.11□□□□□ -0.31
SCFD1-215ENST00000555259 NBPF5PQ86XG9 351 aaPredicted RBP13.11□□□□□ -0.31
SCFD1-215ENST00000555259 CFAP44Q96MT7 982 aa13.11□□□□□ -0.31
SCFD1-215ENST00000555259 BCORQ6W2J9 1755 aa13.11□□□□□ -0.31
SCFD1-215ENST00000555259 DZIP3Q86Y13 1208 aaKnown RBP13.11□□□□□ -0.31
SCFD1-215ENST00000555259 PDE4DIPQ5VU43 2346 aa13.1□□□□□ -0.31
SCFD1-215ENST00000555259 CST9Q5W186 159 aa13.1□□□□□ -0.31
SCFD1-215ENST00000555259 SYNE4Q8N205 404 aa13.1□□□□□ -0.31
SCFD1-215ENST00000555259 MCOLN1Q9GZU1 580 aa13.1□□□□□ -0.31
SCFD1-215ENST00000555259 LTBP1Q14766 1721 aa13.1□□□□□ -0.31
SCFD1-215ENST00000555259 MAP2K2P36507 400 aa13.09□□□□□ -0.31
SCFD1-215ENST00000555259 TEFQ10587 303 aa13.09□□□□□ -0.31
SCFD1-215ENST00000555259 JDP2Q8WYK2 163 aa13.09□□□□□ -0.31
SCFD1-215ENST00000555259 FMNL2Q96PY5 1086 aa13.09□□□□□ -0.31
SCFD1-215ENST00000555259 TRAF5O00463 557 aa13.08□□□□□ -0.32
SCFD1-215ENST00000555259 AOC2O75106 756 aa13.08□□□□□ -0.32
SCFD1-215ENST00000555259 LMOD1P29536 600 aaPredicted RBP13.08□□□□□ -0.32
SCFD1-215ENST00000555259 CLEC4GQ6UXB4 293 aa13.08□□□□□ -0.32
SCFD1-215ENST00000555259 IL17REQ8NFR9 667 aa13.08□□□□□ -0.32
SCFD1-215ENST00000555259 GJA3Q9Y6H8 435 aa13.08□□□□□ -0.32
SCFD1-215ENST00000555259 TLL2Q9Y6L7 1015 aa13.08□□□□□ -0.32
SCFD1-215ENST00000555259 SNED1Q8TER0 1413 aa13.08□□□□□ -0.32
SCFD1-215ENST00000555259 CA12O43570 354 aa13.07□□□□□ -0.32
SCFD1-215ENST00000555259 EPS15P42566 896 aa13.07□□□□□ -0.32
SCFD1-215ENST00000555259 SCNN1DP51172 638 aa13.07□□□□□ -0.32
SCFD1-215ENST00000555259 EIF6P56537 245 aaKnown RBP13.07□□□□□ -0.32
SCFD1-215ENST00000555259 TPTE2Q6XPS3 522 aa13.07□□□□□ -0.32
SCFD1-215ENST00000555259 PSMD1Q99460 953 aa13.07□□□□□ -0.32
SCFD1-215ENST00000555259 ZNF652Q9Y2D9 606 aa13.07□□□□□ -0.32
SCFD1-215ENST00000555259 COL4A5P29400 1685 aa13.07□□□□□ -0.32
SCFD1-215ENST00000555259 SIPA1L3O60292 1781 aaPredicted RBP13.07□□□□□ -0.32
SCFD1-215ENST00000555259 ALDH1B1P30837 517 aa13.07□□□□□ -0.32
SCFD1-215ENST00000555259 PIP4K2AP48426 406 aaPredicted RBP13.07□□□□□ -0.32
SCFD1-215ENST00000555259 KNSTRNQ9Y448 316 aa13.07□□□□□ -0.32
SCFD1-215ENST00000555259 TRPM7Q96QT4 1865 aa13.06□□□□□ -0.32
SCFD1-215ENST00000555259 USP50Q70EL3 339 aaPredicted RBP13.06□□□□□ -0.32
SCFD1-215ENST00000555259 NIP7Q9Y221 180 aaKnown RBP eCLIP13.06□□□□□ -0.32
SCFD1-215ENST00000555259 CASP8AP2Q9UKL3 1982 aa13.05□□□□□ -0.32
SCFD1-215ENST00000555259 GNAT3A8MTJ3 354 aa13.05□□□□□ -0.32
SCFD1-215ENST00000555259 KCNQ3O43525 872 aa13.05□□□□□ -0.32
SCFD1-215ENST00000555259 DGKZQ13574 1117 aa13.05□□□□□ -0.32
SCFD1-215ENST00000555259 SAPCD2Q86UD0 394 aa13.05□□□□□ -0.32
SCFD1-215ENST00000555259 USP16Q9Y5T5 823 aa13.05□□□□□ -0.32
SCFD1-215ENST00000555259 FAM177BA6PVY3 158 aa13.04□□□□□ -0.32
SCFD1-215ENST00000555259 DIAPH1O60610 1272 aaKnown RBP13.04□□□□□ -0.32
SCFD1-215ENST00000555259 BRPF1P55201 1214 aaPredicted RBP13.04□□□□□ -0.32
SCFD1-215ENST00000555259 CACNB1Q02641 598 aaPredicted RBP13.03□□□□□ -0.32
SCFD1-215ENST00000555259 AMER1Q5JTC6 1135 aaPredicted RBP13.03□□□□□ -0.32
SCFD1-215ENST00000555259 CC2D2BQ6DHV5 1058 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms