RNA–Protein interactions for RNA: ENST00000554997.1

SYNE2-215, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 711 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-215ENST00000554997 MAP3K15Q6ZN16 1313 aa12.99□□□□□ -0.33
SYNE2-215ENST00000554997 PNPLA7Q6ZV29 1317 aa12.99□□□□□ -0.33
SYNE2-215ENST00000554997 KIF16BQ96L93 1317 aa12.99□□□□□ -0.33
SYNE2-215ENST00000554997 PI4KAP2A4QPH2 592 aa12.99□□□□□ -0.33
SYNE2-215ENST00000554997 CAMTA2O94983 1202 aa12.99□□□□□ -0.33
SYNE2-215ENST00000554997 FKBP5Q13451 457 aaPredicted RBP12.99□□□□□ -0.33
SYNE2-215ENST00000554997 ZKSCAN2Q63HK3 967 aa12.99□□□□□ -0.33
SYNE2-215ENST00000554997 RIC3Q7Z5B4 369 aa12.99□□□□□ -0.33
SYNE2-215ENST00000554997 PI4KAP1Q8N8J0 262 aa12.99□□□□□ -0.33
SYNE2-215ENST00000554997 FRAT1Q92837 279 aaPredicted RBP12.99□□□□□ -0.33
SYNE2-215ENST00000554997 API5Q9BZZ5 524 aaKnown RBP12.99□□□□□ -0.33
SYNE2-215ENST00000554997 COL5A3P25940 1745 aaPredicted RBP12.99□□□□□ -0.33
SYNE2-215ENST00000554997 USPL1Q5W0Q7 1092 aa12.98□□□□□ -0.33
SYNE2-215ENST00000554997 ATF7IPQ6VMQ6 1270 aa12.98□□□□□ -0.33
SYNE2-215ENST00000554997 GIGYF2Q6Y7W6 1299 aaKnown RBP12.98□□□□□ -0.33
SYNE2-215ENST00000554997 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.98□□□□□ -0.33
SYNE2-215ENST00000554997 ZBTB3Q9H5J0 574 aa12.98□□□□□ -0.33
SYNE2-215ENST00000554997 TAF1LQ8IZX4 1826 aa12.97□□□□□ -0.33
SYNE2-215ENST00000554997 LAMB4A4D0S4 1761 aa12.97□□□□□ -0.33
SYNE2-215ENST00000554997 USP42Q9H9J4 1324 aaKnown RBP12.97□□□□□ -0.33
SYNE2-215ENST00000554997 HLFQ16534 295 aa12.97□□□□□ -0.33
SYNE2-215ENST00000554997 NLGN1Q8N2Q7 840 aa12.97□□□□□ -0.33
SYNE2-215ENST00000554997 SLC16A10Q8TF71 515 aa12.97□□□□□ -0.33
SYNE2-215ENST00000554997 METTL22Q9BUU2 404 aaPredicted RBP12.97□□□□□ -0.33
SYNE2-215ENST00000554997 BCL2L12Q9HB09 334 aa12.97□□□□□ -0.33
SYNE2-215ENST00000554997 MAP3K2Q9Y2U5 619 aa12.97□□□□□ -0.33
SYNE2-215ENST00000554997 MYH14Q7Z406 1995 aaKnown RBP12.96□□□□□ -0.33
SYNE2-215ENST00000554997 MS4A1P11836 297 aa12.96□□□□□ -0.33
SYNE2-215ENST00000554997 GYS1P13807 737 aa12.96□□□□□ -0.33
SYNE2-215ENST00000554997 TCIRG1Q13488 830 aa12.96□□□□□ -0.33
SYNE2-215ENST00000554997 HSP90AB3PQ58FF7 597 aa12.96□□□□□ -0.33
SYNE2-215ENST00000554997 DNAAF4Q8WXU2 420 aa12.96□□□□□ -0.33
SYNE2-215ENST00000554997 SRP68Q9UHB9 627 aaKnown RBP12.96□□□□□ -0.33
SYNE2-215ENST00000554997 ZNF652Q9Y2D9 606 aa12.96□□□□□ -0.33
SYNE2-215ENST00000554997 SUPT16HQ9Y5B9 1047 aaKnown RBP12.96□□□□□ -0.33
SYNE2-215ENST00000554997 ADCY9O60503 1353 aa12.95□□□□□ -0.34
SYNE2-215ENST00000554997 RNF123Q5XPI4 1314 aa12.95□□□□□ -0.34
SYNE2-215ENST00000554997 F6X3S4 739 aa12.95□□□□□ -0.34
SYNE2-215ENST00000554997 PLIN1O60240 522 aa12.95□□□□□ -0.34
SYNE2-215ENST00000554997 TRIM27P14373 513 aa12.95□□□□□ -0.34
SYNE2-215ENST00000554997 TRIM28Q13263 835 aaKnown RBP12.95□□□□□ -0.34
SYNE2-215ENST00000554997 R3HDM1Q15032 1099 aaKnown RBP12.95□□□□□ -0.34
SYNE2-215ENST00000554997 ZNF34Q8IZ26 560 aa12.95□□□□□ -0.34
SYNE2-215ENST00000554997 TM4SF1P30408 202 aa12.94□□□□□ -0.34
SYNE2-215ENST00000554997 NEXNQ0ZGT2 675 aa12.94□□□□□ -0.34
SYNE2-215ENST00000554997 PDE3AQ14432 1141 aa12.94□□□□□ -0.34
SYNE2-215ENST00000554997 BEND3Q5T5X7 828 aa12.94□□□□□ -0.34
SYNE2-215ENST00000554997 DZIP1LQ8IYY4 767 aaKnown RBP12.94□□□□□ -0.34
SYNE2-215ENST00000554997 LINS1Q8NG48 757 aa12.94□□□□□ -0.34
SYNE2-215ENST00000554997 ISCA1Q9BUE6 129 aa12.94□□□□□ -0.34
SYNE2-215ENST00000554997 CCT4P50991 539 aaKnown RBP12.93□□□□□ -0.34
SYNE2-215ENST00000554997 RRP1P56182 461 aaKnown RBP12.93□□□□□ -0.34
SYNE2-215ENST00000554997 FKBP8Q14318 412 aa12.93□□□□□ -0.34
SYNE2-215ENST00000554997 INTS3Q68E01 1043 aaKnown RBP12.93□□□□□ -0.34
SYNE2-215ENST00000554997 SLC4A10Q6U841 1118 aa12.93□□□□□ -0.34
SYNE2-215ENST00000554997 SETDB2Q96T68 719 aa12.93□□□□□ -0.34
SYNE2-215ENST00000554997 MYD88Q99836 296 aa12.93□□□□□ -0.34
SYNE2-215ENST00000554997 PDGFDQ9GZP0 370 aaPredicted RBP12.93□□□□□ -0.34
SYNE2-215ENST00000554997 ALDH1L1O75891 902 aa12.92□□□□□ -0.34
SYNE2-215ENST00000554997 IGKV5-2P06315 115 aa12.92□□□□□ -0.34
SYNE2-215ENST00000554997 TBC1D9BQ66K14 1250 aa12.92□□□□□ -0.34
SYNE2-215ENST00000554997 CCDC191Q8NCU4 936 aa12.92□□□□□ -0.34
SYNE2-215ENST00000554997 CLUAP1Q96AJ1 413 aa12.92□□□□□ -0.34
SYNE2-215ENST00000554997 SRCIN1Q9C0H9 1055 aa12.92□□□□□ -0.34
SYNE2-215ENST00000554997 NIP7Q9Y221 180 aaKnown RBP eCLIP12.92□□□□□ -0.34
SYNE2-215ENST00000554997 ABCC4O15439 1325 aa12.91□□□□□ -0.34
SYNE2-215ENST00000554997 PSDA5PKW4 1024 aaPredicted RBP12.91□□□□□ -0.34
SYNE2-215ENST00000554997 ATP5J2-PTCD1G3V325 749 aa12.91□□□□□ -0.34
SYNE2-215ENST00000554997 NFIXQ14938 502 aa12.91□□□□□ -0.34
SYNE2-215ENST00000554997 PARP10Q53GL7 1025 aa12.91□□□□□ -0.34
SYNE2-215ENST00000554997 FTSJ3Q8IY81 847 aaKnown RBP12.91□□□□□ -0.34
SYNE2-215ENST00000554997 TNNQ9UQP3 1299 aa12.91□□□□□ -0.34
SYNE2-215ENST00000554997 UBR3Q6ZT12 1888 aa12.91□□□□□ -0.34
SYNE2-215ENST00000554997 SRCAPQ6ZRS2 3230 aa12.9□□□□□ -0.34
SYNE2-215ENST00000554997 NEURL1BA8MQ27 555 aa12.9□□□□□ -0.34
SYNE2-215ENST00000554997 RLBP1P12271 317 aa12.9□□□□□ -0.34
SYNE2-215ENST00000554997 CWF19L2Q2TBE0 894 aaKnown RBP12.9□□□□□ -0.34
SYNE2-215ENST00000554997 BICDL1Q6ZP65 573 aa12.9□□□□□ -0.34
SYNE2-215ENST00000554997 PPP1R42Q7Z4L9 355 aa12.9□□□□□ -0.34
SYNE2-215ENST00000554997 NLRP10Q86W26 655 aa12.9□□□□□ -0.34
SYNE2-215ENST00000554997 PANK1Q8TE04 598 aa12.9□□□□□ -0.34
SYNE2-215ENST00000554997 CWC25Q9NXE8 425 aaPredicted RBP12.9□□□□□ -0.34
SYNE2-215ENST00000554997 CACNA1FO60840 1977 aa12.9□□□□□ -0.34
SYNE2-215ENST00000554997 IBTKQ9P2D0 1353 aaPredicted RBP12.9□□□□□ -0.34
SYNE2-215ENST00000554997 ATP10DQ9P241 1426 aa12.89□□□□□ -0.35
SYNE2-215ENST00000554997 GPTP24298 496 aa12.89□□□□□ -0.35
SYNE2-215ENST00000554997 GCKRQ14397 625 aa12.89□□□□□ -0.35
SYNE2-215ENST00000554997 C20orf194Q5TEA3 1177 aa12.89□□□□□ -0.35
SYNE2-215ENST00000554997 SUSD4Q5VX71 490 aa12.89□□□□□ -0.35
SYNE2-215ENST00000554997 TPTE2Q6XPS3 522 aa12.89□□□□□ -0.35
SYNE2-215ENST00000554997 TMEM57Q8N5G2 664 aa12.89□□□□□ -0.35
SYNE2-215ENST00000554997 MTFR1LQ9H019 292 aa12.89□□□□□ -0.35
SYNE2-215ENST00000554997 H7C1W4 665 aa12.88□□□□□ -0.35
SYNE2-215ENST00000554997 UTP14AQ9BVJ6 771 aaKnown RBP12.88□□□□□ -0.35
SYNE2-215ENST00000554997 USP44Q9H0E7 712 aa12.88□□□□□ -0.35
SYNE2-215ENST00000554997 UBN2Q6ZU65 1347 aa12.88□□□□□ -0.35
SYNE2-215ENST00000554997 POLRMTO00411 1230 aaKnown RBP12.87□□□□□ -0.35
SYNE2-215ENST00000554997 ZBTB7BO15156 539 aaPredicted RBP12.87□□□□□ -0.35
SYNE2-215ENST00000554997 ZBTB7AO95365 584 aa12.87□□□□□ -0.35
SYNE2-215ENST00000554997 SERPINB2P05120 415 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms