RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 WWC1Q8IX03 1113 aa15.1■□□□□ 0.01
CCDC88C-208ENST00000554165 SETDB2Q96T68 719 aa15.1■□□□□ 0.01
CCDC88C-208ENST00000554165 ZBTB3Q9H5J0 574 aa15.1■□□□□ 0.01
CCDC88C-208ENST00000554165 IFT57Q9NWB7 429 aa15.1■□□□□ 0.01
CCDC88C-208ENST00000554165 NRXN2Q9P2S2 1712 aa15.09■□□□□ 0.01
CCDC88C-208ENST00000554165 FAM177BA6PVY3 158 aa15.09■□□□□ 0.01
CCDC88C-208ENST00000554165 DUSP27Q5VZP5 1158 aa15.09■□□□□ 0.01
CCDC88C-208ENST00000554165 PRR5LQ6MZQ0 368 aa15.09■□□□□ 0.01
CCDC88C-208ENST00000554165 TSR2Q969E8 191 aaKnown RBP15.09■□□□□ 0.01
CCDC88C-208ENST00000554165 BCS1LQ9Y276 419 aa15.09■□□□□ 0.01
CCDC88C-208ENST00000554165 GRIN3BO60391 1043 aa15.08■□□□□ 0
CCDC88C-208ENST00000554165 GNAI1P63096 354 aa15.08■□□□□ 0
CCDC88C-208ENST00000554165 CLEC4GQ6UXB4 293 aa15.08■□□□□ 0
CCDC88C-208ENST00000554165 C8orf58Q8NAV2 365 aa15.08■□□□□ 0
CCDC88C-208ENST00000554165 CHPF2Q9P2E5 772 aa15.08■□□□□ 0
CCDC88C-208ENST00000554165 NIP7Q9Y221 180 aaKnown RBP eCLIP15.08■□□□□ 0
CCDC88C-208ENST00000554165 MAP3K15Q6ZN16 1313 aa15.08■□□□□ 0
CCDC88C-208ENST00000554165 AIMP1Q12904 312 aaKnown RBP15.07■□□□□ 0
CCDC88C-208ENST00000554165 HDGFL1Q5TGJ6 251 aa15.07■□□□□ 0
CCDC88C-208ENST00000554165 TSPYL6Q8N831 410 aa15.07■□□□□ 0
CCDC88C-208ENST00000554165 XAGE3Q8WTP9 111 aa15.07■□□□□ 0
CCDC88C-208ENST00000554165 ERBB4Q15303 1308 aa15.07■□□□□ 0
CCDC88C-208ENST00000554165 GPTP24298 496 aa15.06■□□□□ 0
CCDC88C-208ENST00000554165 CALD1Q05682 793 aaKnown RBP15.06■□□□□ 0
CCDC88C-208ENST00000554165 CCDC27Q2M243 656 aa15.06■□□□□ 0
CCDC88C-208ENST00000554165 KIF6Q6ZMV9 814 aa15.06■□□□□ 0
CCDC88C-208ENST00000554165 COPS6Q7L5N1 327 aa15.06■□□□□ 0
CCDC88C-208ENST00000554165 C2CD5Q86YS7 1000 aa15.06■□□□□ 0
CCDC88C-208ENST00000554165 CNBD1Q8NA66 436 aa15.06■□□□□ 0
CCDC88C-208ENST00000554165 ZNF652Q9Y2D9 606 aa15.06■□□□□ 0
CCDC88C-208ENST00000554165 ANKRD31Q8N7Z5 1873 aa15.06■□□□□ 0
CCDC88C-208ENST00000554165 ERVV-1B6SEH8 477 aa15.05■□□□□ -0
CCDC88C-208ENST00000554165 NBPF5PQ86XG9 351 aaPredicted RBP15.05■□□□□ -0
CCDC88C-208ENST00000554165 ZNF428Q96B54 188 aa15.05■□□□□ -0
CCDC88C-208ENST00000554165 DDX21Q9NR30 783 aaKnown RBP eCLIP15.05■□□□□ -0
CCDC88C-208ENST00000554165 PIM2Q9P1W9 311 aa15.05■□□□□ -0
CCDC88C-208ENST00000554165 BRCA1P38398 1863 aaKnown RBP15.05■□□□□ -0
CCDC88C-208ENST00000554165 CHD4Q14839 1912 aa15.05■□□□□ -0
CCDC88C-208ENST00000554165 NUP98P52948 1817 aa15.04■□□□□ -0
CCDC88C-208ENST00000554165 UBN2Q6ZU65 1347 aa15.04■□□□□ -0
CCDC88C-208ENST00000554165 NPHP1O15259 732 aa15.04■□□□□ -0
CCDC88C-208ENST00000554165 DALRD3Q5D0E6 543 aaKnown RBP15.04■□□□□ -0
CCDC88C-208ENST00000554165 BRIP1Q9BX63 1249 aa15.04■□□□□ -0
CCDC88C-208ENST00000554165 SPINK5Q9NQ38 1064 aaPredicted RBP15.04■□□□□ -0
CCDC88C-208ENST00000554165 TCERG1O14776 1098 aaKnown RBP15.03■□□□□ -0
CCDC88C-208ENST00000554165 HOXB7P09629 217 aa15.03■□□□□ -0
CCDC88C-208ENST00000554165 SUSD4Q5VX71 490 aa15.03■□□□□ -0
CCDC88C-208ENST00000554165 GIGYF2Q6Y7W6 1299 aaKnown RBP15.03■□□□□ -0
CCDC88C-208ENST00000554165 ARHGAP27Q6ZUM4 889 aa15.03■□□□□ -0
CCDC88C-208ENST00000554165 NUTM1Q86Y26 1132 aa15.03■□□□□ -0
CCDC88C-208ENST00000554165 H0YIN7 160 aa15.02■□□□□ -0
CCDC88C-208ENST00000554165 RGL2O15211 777 aa15.02■□□□□ -0
CCDC88C-208ENST00000554165 ZNF34Q8IZ26 560 aa15.02■□□□□ -0
CCDC88C-208ENST00000554165 ZNF784Q8NCA9 323 aaPredicted RBP15.02■□□□□ -0
CCDC88C-208ENST00000554165 ZNF622Q969S3 477 aaKnown RBP eCLIP15.02■□□□□ -0
CCDC88C-208ENST00000554165 ABCC12Q96J65 1359 aa15.01□□□□□ -0.01
CCDC88C-208ENST00000554165 ST5P78524 1137 aa15.01□□□□□ -0.01
CCDC88C-208ENST00000554165 ERFEQ4G0M1 354 aa15.01□□□□□ -0.01
CCDC88C-208ENST00000554165 PHAXQ9H814 394 aaKnown RBP15.01□□□□□ -0.01
CCDC88C-208ENST00000554165 ZNF219Q9P2Y4 722 aaPredicted RBP15.01□□□□□ -0.01
CCDC88C-208ENST00000554165 DBF4Q9UBU7 674 aaPredicted RBP15.01□□□□□ -0.01
CCDC88C-208ENST00000554165 ATP10DQ9P241 1426 aa15□□□□□ -0.01
CCDC88C-208ENST00000554165 COL11A2P13942 1736 aaPredicted RBP15□□□□□ -0.01
CCDC88C-208ENST00000554165 IL16Q14005 1332 aa15□□□□□ -0.01
CCDC88C-208ENST00000554165 PDE6BP35913 854 aa15□□□□□ -0.01
CCDC88C-208ENST00000554165 TPTE2Q6XPS3 522 aa15□□□□□ -0.01
CCDC88C-208ENST00000554165 TTLL6Q8N841 843 aa15□□□□□ -0.01
CCDC88C-208ENST00000554165 FANCIQ9NVI1 1328 aa14.99□□□□□ -0.01
CCDC88C-208ENST00000554165 SRGNP10124 158 aa14.99□□□□□ -0.01
CCDC88C-208ENST00000554165 NCBP3Q53F19 620 aaKnown RBP14.99□□□□□ -0.01
CCDC88C-208ENST00000554165 C3orf67Q6ZVT6 689 aa14.99□□□□□ -0.01
CCDC88C-208ENST00000554165 WDR63Q8IWG1 891 aa14.99□□□□□ -0.01
CCDC88C-208ENST00000554165 MIER1Q8N108 512 aa14.99□□□□□ -0.01
CCDC88C-208ENST00000554165 SYNE4Q8N205 404 aa14.99□□□□□ -0.01
CCDC88C-208ENST00000554165 NTSR2O95665 410 aa14.98□□□□□ -0.01
CCDC88C-208ENST00000554165 GTF2E1P29083 439 aaPredicted RBP14.98□□□□□ -0.01
CCDC88C-208ENST00000554165 HYPKQ9NX55 129 aa14.98□□□□□ -0.01
CCDC88C-208ENST00000554165 DLEC1Q9Y238 1755 aa14.98□□□□□ -0.01
CCDC88C-208ENST00000554165 TNRC6CQ9HCJ0 1690 aaKnown RBP14.97□□□□□ -0.01
CCDC88C-208ENST00000554165 ARFGEF1Q9Y6D6 1849 aa14.97□□□□□ -0.01
CCDC88C-208ENST00000554165 PRELPP51888 382 aa14.97□□□□□ -0.01
CCDC88C-208ENST00000554165 RASSF7Q02833 373 aa14.97□□□□□ -0.01
CCDC88C-208ENST00000554165 EXOSC9Q06265 439 aaKnown RBP14.97□□□□□ -0.01
CCDC88C-208ENST00000554165 TCIRG1Q13488 830 aa14.97□□□□□ -0.01
CCDC88C-208ENST00000554165 TWISTNBQ3B726 338 aaPredicted RBP14.97□□□□□ -0.01
CCDC88C-208ENST00000554165 DIEXFQ68CQ4 756 aaKnown RBP14.97□□□□□ -0.01
CCDC88C-208ENST00000554165 ANKRD13DQ6ZTN6 518 aa14.97□□□□□ -0.01
CCDC88C-208ENST00000554165 PLBD2Q8NHP8 589 aa14.97□□□□□ -0.01
CCDC88C-208ENST00000554165 ZNF521Q96K83 1311 aa14.96□□□□□ -0.01
CCDC88C-208ENST00000554165 KLRG2A4D1S0 409 aaPredicted RBP14.96□□□□□ -0.01
CCDC88C-208ENST00000554165 ATP5J2-PTCD1G3V325 749 aa14.96□□□□□ -0.01
CCDC88C-208ENST00000554165 CCER2I3L3R5 266 aa14.96□□□□□ -0.01
CCDC88C-208ENST00000554165 C21orf2O43822 256 aa14.96□□□□□ -0.01
CCDC88C-208ENST00000554165 CCDC30Q5VVM6 783 aa14.96□□□□□ -0.01
CCDC88C-208ENST00000554165 OLFM4Q6UX06 510 aa14.96□□□□□ -0.01
CCDC88C-208ENST00000554165 G2E3Q7L622 706 aa14.96□□□□□ -0.01
CCDC88C-208ENST00000554165 SLC51AQ86UW1 340 aa14.96□□□□□ -0.01
CCDC88C-208ENST00000554165 NLRP10Q86W26 655 aa14.96□□□□□ -0.01
CCDC88C-208ENST00000554165 NYXQ9GZU5 481 aa14.96□□□□□ -0.01
CCDC88C-208ENST00000554165 SLX4Q8IY92 1834 aa14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms