RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 ANKRD13DQ6ZTN6 518 aa15.64■□□□□ 0.09
SHMT2-209ENST00000553949 ZBTB3Q9H5J0 574 aa15.64■□□□□ 0.09
SHMT2-209ENST00000553949 TUBGCP6Q96RT7 1819 aa15.64■□□□□ 0.09
SHMT2-209ENST00000553949 ERVV-1B6SEH8 477 aa15.63■□□□□ 0.09
SHMT2-209ENST00000553949 DDX58O95786 925 aaKnown RBP15.63■□□□□ 0.09
SHMT2-209ENST00000553949 FKBP5Q13451 457 aaPredicted RBP15.63■□□□□ 0.09
SHMT2-209ENST00000553949 PLBD2Q8NHP8 589 aa15.63■□□□□ 0.09
SHMT2-209ENST00000553949 QSER1Q2KHR3 1735 aa15.63■□□□□ 0.09
SHMT2-209ENST00000553949 RGL2O15211 777 aa15.62■□□□□ 0.09
SHMT2-209ENST00000553949 GYS1P13807 737 aa15.62■□□□□ 0.09
SHMT2-209ENST00000553949 HLFQ16534 295 aa15.62■□□□□ 0.09
SHMT2-209ENST00000553949 RIC3Q7Z5B4 369 aa15.62■□□□□ 0.09
SHMT2-209ENST00000553949 BCL2L12Q9HB09 334 aa15.62■□□□□ 0.09
SHMT2-209ENST00000553949 NOB1Q9ULX3 412 aaKnown RBP15.62■□□□□ 0.09
SHMT2-209ENST00000553949 PTPRCP08575 1304 aa15.62■□□□□ 0.09
SHMT2-209ENST00000553949 PI4KAP2A4QPH2 592 aa15.61■□□□□ 0.09
SHMT2-209ENST00000553949 FKBP8Q14318 412 aa15.61■□□□□ 0.09
SHMT2-209ENST00000553949 KSR2Q6VAB6 950 aa15.61■□□□□ 0.09
SHMT2-209ENST00000553949 PI4KAP1Q8N8J0 262 aa15.61■□□□□ 0.09
SHMT2-209ENST00000553949 SLC16A10Q8TF71 515 aa15.61■□□□□ 0.09
SHMT2-209ENST00000553949 ZNF652Q9Y2D9 606 aa15.61■□□□□ 0.09
SHMT2-209ENST00000553949 KIF16BQ96L93 1317 aa15.61■□□□□ 0.09
SHMT2-209ENST00000553949 C4AP0C0L4 1744 aa15.6■□□□□ 0.09
SHMT2-209ENST00000553949 CLEC4GQ6UXB4 293 aa15.6■□□□□ 0.09
SHMT2-209ENST00000553949 MAP3K2Q9Y2U5 619 aa15.6■□□□□ 0.09
SHMT2-209ENST00000553949 ADCY9O60503 1353 aa15.6■□□□□ 0.09
SHMT2-209ENST00000553949 ZBTB7AO95365 584 aa15.59■□□□□ 0.09
SHMT2-209ENST00000553949 MSL1Q68DK7 614 aa15.59■□□□□ 0.09
SHMT2-209ENST00000553949 GIGYF2Q6Y7W6 1299 aaKnown RBP15.59■□□□□ 0.09
SHMT2-209ENST00000553949 NLGN1Q8N2Q7 840 aa15.59■□□□□ 0.09
SHMT2-209ENST00000553949 FRAT1Q92837 279 aaPredicted RBP15.59■□□□□ 0.09
SHMT2-209ENST00000553949 CASZ1Q86V15 1759 aa15.58■□□□□ 0.08
SHMT2-209ENST00000553949 F6X3S4 739 aa15.58■□□□□ 0.08
SHMT2-209ENST00000553949 IPO8O15397 1037 aaKnown RBP15.58■□□□□ 0.08
SHMT2-209ENST00000553949 TCIRG1Q13488 830 aa15.58■□□□□ 0.08
SHMT2-209ENST00000553949 HSP90AB3PQ58FF7 597 aa15.58■□□□□ 0.08
SHMT2-209ENST00000553949 TBC1D9BQ66K14 1250 aa15.58■□□□□ 0.08
SHMT2-209ENST00000553949 DNAAF4Q8WXU2 420 aa15.58■□□□□ 0.08
SHMT2-209ENST00000553949 ARHGAP45Q92619 1136 aa15.58■□□□□ 0.08
SHMT2-209ENST00000553949 MTFR1LQ9H019 292 aa15.58■□□□□ 0.08
SHMT2-209ENST00000553949 SCN7AQ01118 1682 aa15.57■□□□□ 0.08
SHMT2-209ENST00000553949 NFIXQ14938 502 aa15.57■□□□□ 0.08
SHMT2-209ENST00000553949 METTL22Q9BUU2 404 aaPredicted RBP15.57■□□□□ 0.08
SHMT2-209ENST00000553949 API5Q9BZZ5 524 aaKnown RBP15.57■□□□□ 0.08
SHMT2-209ENST00000553949 ATP10DQ9P241 1426 aa15.57■□□□□ 0.08
SHMT2-209ENST00000553949 TM4SF1P30408 202 aa15.56■□□□□ 0.08
SHMT2-209ENST00000553949 ZKSCAN2Q63HK3 967 aa15.56■□□□□ 0.08
SHMT2-209ENST00000553949 ATF7IPQ6VMQ6 1270 aa15.56■□□□□ 0.08
SHMT2-209ENST00000553949 BICDL1Q6ZP65 573 aa15.56■□□□□ 0.08
SHMT2-209ENST00000553949 ZNF34Q8IZ26 560 aa15.56■□□□□ 0.08
SHMT2-209ENST00000553949 MYD88Q99836 296 aa15.56■□□□□ 0.08
SHMT2-209ENST00000553949 NIP7Q9Y221 180 aaKnown RBP eCLIP15.56■□□□□ 0.08
SHMT2-209ENST00000553949 BCORQ6W2J9 1755 aa15.56■□□□□ 0.08
SHMT2-209ENST00000553949 CACNA1FO60840 1977 aa15.56■□□□□ 0.08
SHMT2-209ENST00000553949 ATP5J2-PTCD1G3V325 749 aa15.55■□□□□ 0.08
SHMT2-209ENST00000553949 TRIM27P14373 513 aa15.55■□□□□ 0.08
SHMT2-209ENST00000553949 GPTP24298 496 aa15.55■□□□□ 0.08
SHMT2-209ENST00000553949 NEXNQ0ZGT2 675 aa15.55■□□□□ 0.08
SHMT2-209ENST00000553949 SLC4A10Q6U841 1118 aa15.55■□□□□ 0.08
SHMT2-209ENST00000553949 SETDB2Q96T68 719 aa15.55■□□□□ 0.08
SHMT2-209ENST00000553949 ISCA1Q9BUE6 129 aa15.55■□□□□ 0.08
SHMT2-209ENST00000553949 ATF5Q9Y2D1 282 aaPredicted RBP15.55■□□□□ 0.08
SHMT2-209ENST00000553949 UBN2Q6ZU65 1347 aa15.54■□□□□ 0.08
SHMT2-209ENST00000553949 MMP10P09238 476 aa15.54■□□□□ 0.08
SHMT2-209ENST00000553949 DDR1Q08345 913 aa15.54■□□□□ 0.08
SHMT2-209ENST00000553949 PLIN1O60240 522 aa15.53■□□□□ 0.08
SHMT2-209ENST00000553949 IGKV5-2P06315 115 aa15.53■□□□□ 0.08
SHMT2-209ENST00000553949 TRIM28Q13263 835 aaKnown RBP15.53■□□□□ 0.08
SHMT2-209ENST00000553949 BEND3Q5T5X7 828 aa15.53■□□□□ 0.08
SHMT2-209ENST00000553949 NLRP10Q86W26 655 aa15.53■□□□□ 0.08
SHMT2-209ENST00000553949 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.53■□□□□ 0.08
SHMT2-209ENST00000553949 LINS1Q8NG48 757 aa15.53■□□□□ 0.08
SHMT2-209ENST00000553949 TNNQ9UQP3 1299 aa15.53■□□□□ 0.08
SHMT2-209ENST00000553949 ARFGEF2Q9Y6D5 1785 aa15.52■□□□□ 0.08
SHMT2-209ENST00000553949 CARMIL3Q8ND23 1372 aa15.52■□□□□ 0.08
SHMT2-209ENST00000553949 ABCC4O15439 1325 aa15.52■□□□□ 0.08
SHMT2-209ENST00000553949 NEURL1BA8MQ27 555 aa15.52■□□□□ 0.08
SHMT2-209ENST00000553949 POLRMTO00411 1230 aaKnown RBP15.52■□□□□ 0.08
SHMT2-209ENST00000553949 POLD1P28340 1107 aa15.52■□□□□ 0.08
SHMT2-209ENST00000553949 CWF19L2Q2TBE0 894 aaKnown RBP15.52■□□□□ 0.08
SHMT2-209ENST00000553949 PARP10Q53GL7 1025 aa15.52■□□□□ 0.08
SHMT2-209ENST00000553949 CLUAP1Q96AJ1 413 aa15.52■□□□□ 0.08
SHMT2-209ENST00000553949 PARP3Q9Y6F1 533 aa15.52■□□□□ 0.08
SHMT2-209ENST00000553949 SERPINB2P05120 415 aa15.51■□□□□ 0.07
SHMT2-209ENST00000553949 CENPBP07199 599 aaPredicted RBP15.51■□□□□ 0.07
SHMT2-209ENST00000553949 PTGER2P43116 358 aa15.51■□□□□ 0.07
SHMT2-209ENST00000553949 RRP1P56182 461 aaKnown RBP15.51■□□□□ 0.07
SHMT2-209ENST00000553949 SUSD4Q5VX71 490 aa15.51■□□□□ 0.07
SHMT2-209ENST00000553949 NBPF5PQ86XG9 351 aaPredicted RBP15.51■□□□□ 0.07
SHMT2-209ENST00000553949 DZIP1LQ8IYY4 767 aaKnown RBP15.51■□□□□ 0.07
SHMT2-209ENST00000553949 CCDC191Q8NCU4 936 aa15.51■□□□□ 0.07
SHMT2-209ENST00000553949 SGIP1Q9BQI5 828 aa15.51■□□□□ 0.07
SHMT2-209ENST00000553949 SPON1Q9HCB6 807 aa15.51■□□□□ 0.07
SHMT2-209ENST00000553949 CWC25Q9NXE8 425 aaPredicted RBP15.51■□□□□ 0.07
SHMT2-209ENST00000553949 PXDNLA1KZ92 1463 aa15.51■□□□□ 0.07
SHMT2-209ENST00000553949 FAM177BA6PVY3 158 aa15.5■□□□□ 0.07
SHMT2-209ENST00000553949 ALDH1L1O75891 902 aa15.5■□□□□ 0.07
SHMT2-209ENST00000553949 CCT4P50991 539 aaKnown RBP15.5■□□□□ 0.07
SHMT2-209ENST00000553949 PPP1R42Q7Z4L9 355 aa15.5■□□□□ 0.07
SHMT2-209ENST00000553949 FTSJ3Q8IY81 847 aaKnown RBP15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 141.2 ms