RNA–Protein interactions for RNA: ENST00000553889.5

PRKCH-209, Transcript of protein kinase C eta, human

TSL 4

Gene PRKCH, Length 553 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKCH-209	ENST00000553889	RAD50	Q92878	1312 aa		11.24	□□□□□ -0.61
PRKCH-209	ENST00000553889	STRC	Q7RTU9	1775 aa		11.23	□□□□□ -0.61
PRKCH-209	ENST00000553889	UBR2	Q8IWV8	1755 aa		11.23	□□□□□ -0.61
PRKCH-209	ENST00000553889	NEURL1B	A8MQ27	555 aa		11.23	□□□□□ -0.61
PRKCH-209	ENST00000553889	HIP1	O00291	1037 aa		11.23	□□□□□ -0.61
PRKCH-209	ENST00000553889	HSP90AA1	P07900	732 aa	Known RBP	11.23	□□□□□ -0.61
PRKCH-209	ENST00000553889	GCKR	Q14397	625 aa		11.23	□□□□□ -0.61
PRKCH-209	ENST00000553889	UNC5CL	Q8IV45	518 aa		11.23	□□□□□ -0.61
PRKCH-209	ENST00000553889	GPATCH3	Q96I76	525 aa		11.23	□□□□□ -0.61
PRKCH-209	ENST00000553889	CARD10	Q9BWT7	1032 aa		11.23	□□□□□ -0.61
PRKCH-209	ENST00000553889	COPRS	Q9NQ92	184 aa		11.23	□□□□□ -0.61
PRKCH-209	ENST00000553889	ECHDC1	Q9NTX5	307 aa		11.23	□□□□□ -0.61
PRKCH-209	ENST00000553889	PCDH11X	Q9BZA7	1347 aa		11.23	□□□□□ -0.61
PRKCH-209	ENST00000553889	PCDH11Y	Q9BZA8	1340 aa		11.23	□□□□□ -0.61
PRKCH-209	ENST00000553889	TNS2	Q63HR2	1409 aa		11.23	□□□□□ -0.61
PRKCH-209	ENST00000553889	PAPPA	Q13219	1627 aa		11.23	□□□□□ -0.61
PRKCH-209	ENST00000553889	GOLGA6L22	H0YM25	854 aa		11.22	□□□□□ -0.61
PRKCH-209	ENST00000553889	ANXA1	P04083	346 aa		11.22	□□□□□ -0.61
PRKCH-209	ENST00000553889	RFX7	Q2KHR2	1363 aa		11.22	□□□□□ -0.61
PRKCH-209	ENST00000553889	ANKRD13D	Q6ZTN6	518 aa		11.22	□□□□□ -0.61
PRKCH-209	ENST00000553889	SPRYD3	Q8NCJ5	442 aa		11.22	□□□□□ -0.61
PRKCH-209	ENST00000553889	RUFY2	Q8WXA3	655 aa		11.22	□□□□□ -0.61
PRKCH-209	ENST00000553889	SUCLG2	Q96I99	432 aa		11.22	□□□□□ -0.61
PRKCH-209	ENST00000553889	TM6SF1	Q9BZW5	370 aa		11.22	□□□□□ -0.61
PRKCH-209	ENST00000553889	LSG1	Q9H089	658 aa	Known RBP	11.22	□□□□□ -0.61
PRKCH-209	ENST00000553889	IL1RAPL2	Q9NP60	686 aa		11.22	□□□□□ -0.61
PRKCH-209	ENST00000553889	AK9	Q5TCS8	1911 aa		11.21	□□□□□ -0.61
PRKCH-209	ENST00000553889	COL5A2	P05997	1499 aa	Predicted RBP	11.21	□□□□□ -0.61
PRKCH-209	ENST00000553889	PRAMEF22	A3QJZ6	481 aa		11.21	□□□□□ -0.61
PRKCH-209	ENST00000553889	TRIM6-TRIM34	B2RNG4	842 aa		11.21	□□□□□ -0.61
PRKCH-209	ENST00000553889	CSB-PGBD3	P0DP91	1061 aa		11.21	□□□□□ -0.61
PRKCH-209	ENST00000553889	RIC3	Q7Z5B4	369 aa		11.21	□□□□□ -0.61
PRKCH-209	ENST00000553889	TTC5	Q8N0Z6	440 aa		11.21	□□□□□ -0.61
PRKCH-209	ENST00000553889	KLHL34	Q8N239	644 aa		11.21	□□□□□ -0.61
PRKCH-209	ENST00000553889	PLBD2	Q8NHP8	589 aa		11.21	□□□□□ -0.61
PRKCH-209	ENST00000553889	XAGE3	Q8WTP9	111 aa		11.21	□□□□□ -0.61
PRKCH-209	ENST00000553889	EVI5L	Q96CN4	794 aa		11.21	□□□□□ -0.61
PRKCH-209	ENST00000553889	SLAIN2	Q9P270	581 aa		11.21	□□□□□ -0.61
PRKCH-209	ENST00000553889	ABCA3	Q99758	1704 aa		11.21	□□□□□ -0.62
PRKCH-209	ENST00000553889	NHSL1	Q5SYE7	1610 aa		11.2	□□□□□ -0.62
PRKCH-209	ENST00000553889	SASH1	O94885	1247 aa		11.2	□□□□□ -0.62
PRKCH-209	ENST00000553889	BAG4	O95429	457 aa	Known RBP	11.2	□□□□□ -0.62
PRKCH-209	ENST00000553889	NEK4	P51957	841 aa		11.2	□□□□□ -0.62
PRKCH-209	ENST00000553889	CASP7	P55210	303 aa		11.2	□□□□□ -0.62
PRKCH-209	ENST00000553889	CABP4	P57796	275 aa		11.2	□□□□□ -0.62
PRKCH-209	ENST00000553889	G3BP1	Q13283	466 aa	Known RBP eCLIP	11.2	□□□□□ -0.62
PRKCH-209	ENST00000553889	KLHL40	Q2TBA0	621 aa		11.2	□□□□□ -0.62
PRKCH-209	ENST00000553889	CWF19L2	Q2TBE0	894 aa	Known RBP	11.2	□□□□□ -0.62
PRKCH-209	ENST00000553889	COPS6	Q7L5N1	327 aa		11.2	□□□□□ -0.62
PRKCH-209	ENST00000553889	NUTM1	Q86Y26	1132 aa		11.2	□□□□□ -0.62
PRKCH-209	ENST00000553889	ZCRB1	Q8TBF4	217 aa	Known RBP	11.2	□□□□□ -0.62
PRKCH-209	ENST00000553889	RILPL2	Q969X0	211 aa		11.2	□□□□□ -0.62
PRKCH-209	ENST00000553889	TMX3	Q96JJ7	454 aa		11.2	□□□□□ -0.62
PRKCH-209	ENST00000553889	BICC1	Q9H694	974 aa	Known RBP	11.2	□□□□□ -0.62
PRKCH-209	ENST00000553889	JCAD	Q9P266	1359 aa		11.19	□□□□□ -0.62
PRKCH-209	ENST00000553889	GOLGA6L3	A6NEY3	463 aa		11.19	□□□□□ -0.62
PRKCH-209	ENST00000553889	PDIA4	P13667	645 aa	Known RBP	11.19	□□□□□ -0.62
PRKCH-209	ENST00000553889	RFX5	P48382	616 aa	Predicted RBP	11.19	□□□□□ -0.62
PRKCH-209	ENST00000553889	MRE11	P49959	708 aa		11.19	□□□□□ -0.62
PRKCH-209	ENST00000553889	SLC39A6	Q13433	755 aa		11.19	□□□□□ -0.62
PRKCH-209	ENST00000553889	TSHZ3	Q63HK5	1081 aa		11.19	□□□□□ -0.62
PRKCH-209	ENST00000553889	TTC14	Q96N46	770 aa		11.19	□□□□□ -0.62
PRKCH-209	ENST00000553889	GPR108	Q9NPR9	543 aa		11.19	□□□□□ -0.62
PRKCH-209	ENST00000553889	ANO2	Q9NQ90	1003 aa		11.19	□□□□□ -0.62
PRKCH-209	ENST00000553889	ATG3	Q9NT62	314 aa		11.19	□□□□□ -0.62
PRKCH-209	ENST00000553889	USP16	Q9Y5T5	823 aa		11.19	□□□□□ -0.62
PRKCH-209	ENST00000553889	KCP	Q6ZWJ8	1503 aa		11.19	□□□□□ -0.62
PRKCH-209	ENST00000553889		H7C1W4	665 aa		11.18	□□□□□ -0.62
PRKCH-209	ENST00000553889	BRD1	O95696	1058 aa		11.18	□□□□□ -0.62
PRKCH-209	ENST00000553889	IFIT2	P09913	472 aa	Known RBP	11.18	□□□□□ -0.62
PRKCH-209	ENST00000553889	SSFA2	P28290	1259 aa		11.18	□□□□□ -0.62
PRKCH-209	ENST00000553889	TRIM28	Q13263	835 aa	Known RBP	11.18	□□□□□ -0.62
PRKCH-209	ENST00000553889	CHRNA2	Q15822	529 aa		11.18	□□□□□ -0.62
PRKCH-209	ENST00000553889	CABLES1	Q8TDN4	633 aa		11.18	□□□□□ -0.62
PRKCH-209	ENST00000553889	DDX17	Q92841	729 aa	Known RBP	11.18	□□□□□ -0.62
PRKCH-209	ENST00000553889	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	11.18	□□□□□ -0.62
PRKCH-209	ENST00000553889	PRDM11	Q9NQV5	511 aa		11.18	□□□□□ -0.62
PRKCH-209	ENST00000553889	PALD1	Q9ULE6	856 aa		11.18	□□□□□ -0.62
PRKCH-209	ENST00000553889	ARFGEF2	Q9Y6D5	1785 aa		11.18	□□□□□ -0.62
PRKCH-209	ENST00000553889	IL2RB	P14784	551 aa		11.17	□□□□□ -0.62
PRKCH-209	ENST00000553889	OS9	Q13438	667 aa	Predicted RBP	11.17	□□□□□ -0.62
PRKCH-209	ENST00000553889	TSGA10IP	Q3SY00	556 aa		11.17	□□□□□ -0.62
PRKCH-209	ENST00000553889	VSIG10	Q8N0Z9	540 aa		11.17	□□□□□ -0.62
PRKCH-209	ENST00000553889	EAF2	Q96CJ1	260 aa	Predicted RBP	11.17	□□□□□ -0.62
PRKCH-209	ENST00000553889	FBXO3	Q9UK99	471 aa		11.17	□□□□□ -0.62
PRKCH-209	ENST00000553889	ZDHHC9	Q9Y397	364 aa		11.17	□□□□□ -0.62
PRKCH-209	ENST00000553889	SHANK3	Q9BYB0	1731 aa		11.17	□□□□□ -0.62
PRKCH-209	ENST00000553889	ATP5J	P18859	108 aa		11.16	□□□□□ -0.62
PRKCH-209	ENST00000553889	PTPN12	Q05209	780 aa	Known RBP	11.16	□□□□□ -0.62
PRKCH-209	ENST00000553889	KIAA1211	Q6ZU35	1233 aa		11.16	□□□□□ -0.62
PRKCH-209	ENST00000553889	MAP4K1	Q92918	833 aa		11.16	□□□□□ -0.62
PRKCH-209	ENST00000553889	MYD88	Q99836	296 aa		11.16	□□□□□ -0.62
PRKCH-209	ENST00000553889	TEX13A	Q9BXU3	409 aa	Predicted RBP	11.16	□□□□□ -0.62
PRKCH-209	ENST00000553889	IL25	Q9H293	177 aa		11.16	□□□□□ -0.62
PRKCH-209	ENST00000553889	LMBRD1	Q9NUN5	540 aa		11.16	□□□□□ -0.62
PRKCH-209	ENST00000553889	PA2G4	Q9UQ80	394 aa	Known RBP	11.16	□□□□□ -0.62
PRKCH-209	ENST00000553889	SNX14	Q9Y5W7	946 aa		11.16	□□□□□ -0.62
PRKCH-209	ENST00000553889	LRP6	O75581	1613 aa		11.16	□□□□□ -0.62
PRKCH-209	ENST00000553889	NUP188	Q5SRE5	1749 aa		11.15	□□□□□ -0.62
PRKCH-209	ENST00000553889	NBPF26	B4DH59	902 aa		11.15	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms