RNA–Protein interactions for RNA: ENST00000553529.5

SHMT2-206, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-206ENST00000553529 PNISRQ8TF01 805 aaKnown RBP23.99■■□□□ 1.43
SHMT2-206ENST00000553529 ZNF219Q9P2Y4 722 aaPredicted RBP23.99■■□□□ 1.43
SHMT2-206ENST00000553529 LAS1LQ9Y4W2 734 aaKnown RBP23.98■■□□□ 1.43
SHMT2-206ENST00000553529 TNRC6CQ9HCJ0 1690 aaKnown RBP23.98■■□□□ 1.43
SHMT2-206ENST00000553529 EIF2S2P20042 333 aaKnown RBP23.97■■□□□ 1.43
SHMT2-206ENST00000553529 SETDB2Q96T68 719 aa23.97■■□□□ 1.43
SHMT2-206ENST00000553529 ZEB1P37275 1124 aaPredicted RBP23.96■■□□□ 1.43
SHMT2-206ENST00000553529 NPM2Q86SE8 214 aaKnown RBP23.96■■□□□ 1.43
SHMT2-206ENST00000553529 CNBD1Q8NA66 436 aa23.96■■□□□ 1.43
SHMT2-206ENST00000553529 NUP98P52948 1817 aa23.96■■□□□ 1.43
SHMT2-206ENST00000553529 PDIA6Q15084 440 aa23.95■■□□□ 1.42
SHMT2-206ENST00000553529 ZBTB3Q9H5J0 574 aa23.95■■□□□ 1.42
SHMT2-206ENST00000553529 NIP7Q9Y221 180 aaKnown RBP eCLIP23.95■■□□□ 1.42
SHMT2-206ENST00000553529 SBF1O95248 1867 aa23.94■■□□□ 1.42
SHMT2-206ENST00000553529 APAF1O14727 1248 aa23.94■■□□□ 1.42
SHMT2-206ENST00000553529 C9orf131Q5VYM1 1079 aa23.94■■□□□ 1.42
SHMT2-206ENST00000553529 LRP10Q7Z4F1 713 aa23.94■■□□□ 1.42
SHMT2-206ENST00000553529 ZNF622Q969S3 477 aaKnown RBP eCLIP23.94■■□□□ 1.42
SHMT2-206ENST00000553529 ZNF316A6NFI3 1004 aaPredicted RBP23.93■■□□□ 1.42
SHMT2-206ENST00000553529 C1QTNF8P60827 252 aa23.93■■□□□ 1.42
SHMT2-206ENST00000553529 SLC51AQ86UW1 340 aa23.93■■□□□ 1.42
SHMT2-206ENST00000553529 ZNF428Q96B54 188 aa23.93■■□□□ 1.42
SHMT2-206ENST00000553529 SLX4Q8IY92 1834 aa23.93■■□□□ 1.42
SHMT2-206ENST00000553529 H0YIN7 160 aa23.92■■□□□ 1.42
SHMT2-206ENST00000553529 GPTP24298 496 aa23.92■■□□□ 1.42
SHMT2-206ENST00000553529 NBPF5PQ86XG9 351 aaPredicted RBP23.92■■□□□ 1.42
SHMT2-206ENST00000553529 GPBP1L1Q9HC44 474 aaPredicted RBP23.92■■□□□ 1.42
SHMT2-206ENST00000553529 ABCC12Q96J65 1359 aa23.91■■□□□ 1.42
SHMT2-206ENST00000553529 UBN2Q6ZU65 1347 aa23.91■■□□□ 1.42
SHMT2-206ENST00000553529 BRIP1Q9BX63 1249 aa23.91■■□□□ 1.42
SHMT2-206ENST00000553529 MAP3K15Q6ZN16 1313 aa23.9■■□□□ 1.42
SHMT2-206ENST00000553529 CHL1O00533 1208 aa23.9■■□□□ 1.42
SHMT2-206ENST00000553529 NPHP1O15259 732 aa23.9■■□□□ 1.42
SHMT2-206ENST00000553529 LMOD3Q0VAK6 560 aa23.9■■□□□ 1.42
SHMT2-206ENST00000553529 NUTM1Q86Y26 1132 aa23.9■■□□□ 1.42
SHMT2-206ENST00000553529 TTLL6Q8N841 843 aa23.9■■□□□ 1.42
SHMT2-206ENST00000553529 OLFM4Q6UX06 510 aa23.89■■□□□ 1.41
SHMT2-206ENST00000553529 CLEC4GQ6UXB4 293 aa23.89■■□□□ 1.41
SHMT2-206ENST00000553529 RNF181Q9P0P0 153 aa23.89■■□□□ 1.41
SHMT2-206ENST00000553529 CCDC88AQ3V6T2 1871 aa23.88■■□□□ 1.41
SHMT2-206ENST00000553529 NFKBIEO00221 500 aa23.88■■□□□ 1.41
SHMT2-206ENST00000553529 C21orf2O43822 256 aa23.88■■□□□ 1.41
SHMT2-206ENST00000553529 ZNF652Q9Y2D9 606 aa23.88■■□□□ 1.41
SHMT2-206ENST00000553529 ST5P78524 1137 aa23.87■■□□□ 1.41
SHMT2-206ENST00000553529 NMRK2Q9NPI5 230 aa23.87■■□□□ 1.41
SHMT2-206ENST00000553529 MBIPQ9NS73 344 aa23.87■■□□□ 1.41
SHMT2-206ENST00000553529 KIF3CO14782 793 aa23.86■■□□□ 1.41
SHMT2-206ENST00000553529 SRGNP10124 158 aa23.86■■□□□ 1.41
SHMT2-206ENST00000553529 PDE6BP35913 854 aa23.86■■□□□ 1.41
SHMT2-206ENST00000553529 TIAM2Q8IVF5 1701 aa23.86■■□□□ 1.41
SHMT2-206ENST00000553529 ARFGEF2Q9Y6D5 1785 aa23.86■■□□□ 1.41
SHMT2-206ENST00000553529 AIMP1Q12904 312 aaKnown RBP23.85■■□□□ 1.41
SHMT2-206ENST00000553529 ERFEQ4G0M1 354 aa23.85■■□□□ 1.41
SHMT2-206ENST00000553529 KIF6Q6ZMV9 814 aa23.85■■□□□ 1.41
SHMT2-206ENST00000553529 C3orf67Q6ZVT6 689 aa23.85■■□□□ 1.41
SHMT2-206ENST00000553529 SUSD4Q5VX71 490 aa23.84■■□□□ 1.41
SHMT2-206ENST00000553529 CHPF2Q9P2E5 772 aa23.84■■□□□ 1.41
SHMT2-206ENST00000553529 FER1L6Q2WGJ9 1857 aa23.83■■□□□ 1.41
SHMT2-206ENST00000553529 PRPF40BQ6NWY9 871 aaKnown RBP23.83■■□□□ 1.41
SHMT2-206ENST00000553529 XAGE3Q8WTP9 111 aa23.83■■□□□ 1.41
SHMT2-206ENST00000553529 ERVV-1B6SEH8 477 aa23.82■■□□□ 1.4
SHMT2-206ENST00000553529 COPS6Q7L5N1 327 aa23.82■■□□□ 1.4
SHMT2-206ENST00000553529 BABAM1Q9NWV8 329 aa23.82■■□□□ 1.4
SHMT2-206ENST00000553529 ELL2O00472 640 aaPredicted RBP23.81■■□□□ 1.4
SHMT2-206ENST00000553529 ZNF853P0CG23 659 aa23.81■■□□□ 1.4
SHMT2-206ENST00000553529 ZNF34Q8IZ26 560 aa23.81■■□□□ 1.4
SHMT2-206ENST00000553529 ANKRD36CQ5JPF3 1778 aa23.8■■□□□ 1.4
SHMT2-206ENST00000553529 TPTE2Q6XPS3 522 aa23.8■■□□□ 1.4
SHMT2-206ENST00000553529 SYNE4Q8N205 404 aa23.8■■□□□ 1.4
SHMT2-206ENST00000553529 MASTLQ96GX5 879 aa23.8■■□□□ 1.4
SHMT2-206ENST00000553529 CFAP44Q96MT7 982 aa23.8■■□□□ 1.4
SHMT2-206ENST00000553529 ERBB4Q15303 1308 aa23.8■■□□□ 1.4
SHMT2-206ENST00000553529 NTSR2O95665 410 aa23.79■■□□□ 1.4
SHMT2-206ENST00000553529 DUSP27Q5VZP5 1158 aa23.79■■□□□ 1.4
SHMT2-206ENST00000553529 STYK1Q6J9G0 422 aa23.79■■□□□ 1.4
SHMT2-206ENST00000553529 GIGYF2Q6Y7W6 1299 aaKnown RBP23.79■■□□□ 1.4
SHMT2-206ENST00000553529 MRS2Q9HD23 443 aa23.79■■□□□ 1.4
SHMT2-206ENST00000553529 HDGFL1Q5TGJ6 251 aa23.78■■□□□ 1.4
SHMT2-206ENST00000553529 KLRG2A4D1S0 409 aaPredicted RBP23.77■■□□□ 1.4
SHMT2-206ENST00000553529 GTF2E1P29083 439 aaPredicted RBP23.77■■□□□ 1.4
SHMT2-206ENST00000553529 C8orf58Q8NAV2 365 aa23.77■■□□□ 1.4
SHMT2-206ENST00000553529 C7orf43Q8WVR3 580 aa23.76■■□□□ 1.39
SHMT2-206ENST00000553529 TSR2Q969E8 191 aaKnown RBP23.76■■□□□ 1.39
SHMT2-206ENST00000553529 SALL2Q9Y467 1007 aaPredicted RBP23.76■■□□□ 1.39
SHMT2-206ENST00000553529 LAMB2P55268 1798 aa23.75■■□□□ 1.39
SHMT2-206ENST00000553529 RGL2O15211 777 aa23.75■■□□□ 1.39
SHMT2-206ENST00000553529 NPR1P16066 1061 aa23.75■■□□□ 1.39
SHMT2-206ENST00000553529 LMNB1P20700 586 aa23.75■■□□□ 1.39
SHMT2-206ENST00000553529 TSPYL6Q8N831 410 aa23.75■■□□□ 1.39
SHMT2-206ENST00000553529 CNKSR1Q969H4 720 aa23.75■■□□□ 1.39
SHMT2-206ENST00000553529 DDX21Q9NR30 783 aaKnown RBP eCLIP23.75■■□□□ 1.39
SHMT2-206ENST00000553529 ANP32CO43423 234 aa23.74■■□□□ 1.39
SHMT2-206ENST00000553529 RRAGCQ9HB90 399 aa23.74■■□□□ 1.39
SHMT2-206ENST00000553529 IFT57Q9NWB7 429 aa23.73■■□□□ 1.39
SHMT2-206ENST00000553529 COL4A1P02462 1669 aa23.73■■□□□ 1.39
SHMT2-206ENST00000553529 TCERG1O14776 1098 aaKnown RBP23.72■■□□□ 1.39
SHMT2-206ENST00000553529 PHAXQ9H814 394 aaKnown RBP23.72■■□□□ 1.39
SHMT2-206ENST00000553529 DICER1Q9UPY3 1922 aaKnown RBP23.71■■□□□ 1.39
SHMT2-206ENST00000553529 CRY2Q49AN0 593 aa23.71■■□□□ 1.39
SHMT2-206ENST00000553529 TAOK3Q9H2K8 898 aa23.71■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms