RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 GOLGA2Q08379 1002 aa18.25■□□□□ 0.51
PTCH1-226ENST00000553011 MYH16Q9H6N6 1097 aa18.25■□□□□ 0.51
PTCH1-226ENST00000553011 NRXN2Q9P2S2 1712 aa18.25■□□□□ 0.51
PTCH1-226ENST00000553011 EXOSC9Q06265 439 aaKnown RBP18.24■□□□□ 0.51
PTCH1-226ENST00000553011 HLFQ16534 295 aa18.24■□□□□ 0.51
PTCH1-226ENST00000553011 TWISTNBQ3B726 338 aaPredicted RBP18.24■□□□□ 0.51
PTCH1-226ENST00000553011 KIF6Q6ZMV9 814 aa18.24■□□□□ 0.51
PTCH1-226ENST00000553011 NLGN2Q8NFZ4 835 aa18.24■□□□□ 0.51
PTCH1-226ENST00000553011 DBF4Q9UBU7 674 aaPredicted RBP18.24■□□□□ 0.51
PTCH1-226ENST00000553011 MAP3K15Q6ZN16 1313 aa18.23■□□□□ 0.51
PTCH1-226ENST00000553011 N4BP2Q86UW6 1770 aaPredicted RBP18.23■□□□□ 0.51
PTCH1-226ENST00000553011 AIMP1Q12904 312 aaKnown RBP18.23■□□□□ 0.51
PTCH1-226ENST00000553011 COPS6Q7L5N1 327 aa18.23■□□□□ 0.51
PTCH1-226ENST00000553011 XAGE3Q8WTP9 111 aa18.23■□□□□ 0.51
PTCH1-226ENST00000553011 ZBTB3Q9H5J0 574 aa18.23■□□□□ 0.51
PTCH1-226ENST00000553011 C10orf71Q711Q0 1435 aa18.23■□□□□ 0.51
PTCH1-226ENST00000553011 ANKRD36CQ5JPF3 1778 aa18.22■□□□□ 0.51
PTCH1-226ENST00000553011 TCERG1O14776 1098 aaKnown RBP18.22■□□□□ 0.51
PTCH1-226ENST00000553011 CLEC4GQ6UXB4 293 aa18.22■□□□□ 0.51
PTCH1-226ENST00000553011 CDCA7LQ96GN5 454 aa18.22■□□□□ 0.51
PTCH1-226ENST00000553011 ZNF652Q9Y2D9 606 aa18.22■□□□□ 0.51
PTCH1-226ENST00000553011 CD2APQ9Y5K6 639 aa18.22■□□□□ 0.51
PTCH1-226ENST00000553011 KIAA1551Q9HCM1 1747 aa18.22■□□□□ 0.51
PTCH1-226ENST00000553011 ERVV-1B6SEH8 477 aa18.21■□□□□ 0.51
PTCH1-226ENST00000553011 SERPINB2P05120 415 aa18.21■□□□□ 0.51
PTCH1-226ENST00000553011 CCDC30Q5VVM6 783 aa18.21■□□□□ 0.51
PTCH1-226ENST00000553011 ANKRD31Q8N7Z5 1873 aa18.2■□□□□ 0.5
PTCH1-226ENST00000553011 CARMIL3Q8ND23 1372 aa18.2■□□□□ 0.5
PTCH1-226ENST00000553011 E9PSI1 815 aa18.2■□□□□ 0.5
PTCH1-226ENST00000553011 RGL2O15211 777 aa18.2■□□□□ 0.5
PTCH1-226ENST00000553011 HNRNPUQ00839 825 aaKnown RBP eCLIP18.2■□□□□ 0.5
PTCH1-226ENST00000553011 SLFN5Q08AF3 891 aa18.2■□□□□ 0.5
PTCH1-226ENST00000553011 SETDB2Q96T68 719 aa18.2■□□□□ 0.5
PTCH1-226ENST00000553011 HYPKQ9NX55 129 aa18.2■□□□□ 0.5
PTCH1-226ENST00000553011 ARFGEF2Q9Y6D5 1785 aa18.19■□□□□ 0.5
PTCH1-226ENST00000553011 VAMP4O75379 141 aa18.19■□□□□ 0.5
PTCH1-226ENST00000553011 PHAXQ9H814 394 aaKnown RBP18.19■□□□□ 0.5
PTCH1-226ENST00000553011 NIP7Q9Y221 180 aaKnown RBP eCLIP18.19■□□□□ 0.5
PTCH1-226ENST00000553011 ATP10DQ9P241 1426 aa18.18■□□□□ 0.5
PTCH1-226ENST00000553011 GIGYF2Q6Y7W6 1299 aaKnown RBP18.18■□□□□ 0.5
PTCH1-226ENST00000553011 CHMP4AQ9BY43 222 aa18.18■□□□□ 0.5
PTCH1-226ENST00000553011 CCDC24Q8N4L8 307 aa18.17■□□□□ 0.5
PTCH1-226ENST00000553011 PXDNLA1KZ92 1463 aa18.17■□□□□ 0.5
PTCH1-226ENST00000553011 BRCA1P38398 1863 aaKnown RBP18.16■□□□□ 0.5
PTCH1-226ENST00000553011 FAM177BA6PVY3 158 aa18.16■□□□□ 0.5
PTCH1-226ENST00000553011 GPTP24298 496 aa18.16■□□□□ 0.5
PTCH1-226ENST00000553011 PRR5LQ6MZQ0 368 aa18.16■□□□□ 0.5
PTCH1-226ENST00000553011 STK31Q9BXU1 1019 aa18.16■□□□□ 0.5
PTCH1-226ENST00000553011 ANKRD13DQ6ZTN6 518 aa18.15■□□□□ 0.5
PTCH1-226ENST00000553011 NBPF5PQ86XG9 351 aaPredicted RBP18.15■□□□□ 0.5
PTCH1-226ENST00000553011 ZNF34Q8IZ26 560 aa18.15■□□□□ 0.5
PTCH1-226ENST00000553011 TRMT2AQ8IZ69 625 aaKnown RBP18.15■□□□□ 0.5
PTCH1-226ENST00000553011 PLBD2Q8NHP8 589 aa18.15■□□□□ 0.5
PTCH1-226ENST00000553011 UBN2Q6ZU65 1347 aa18.15■□□□□ 0.5
PTCH1-226ENST00000553011 SLC4A2P04920 1241 aa18.14■□□□□ 0.49
PTCH1-226ENST00000553011 G2E3Q7L622 706 aa18.14■□□□□ 0.49
PTCH1-226ENST00000553011 CNBD1Q8NA66 436 aa18.14■□□□□ 0.49
PTCH1-226ENST00000553011 WWC3Q9ULE0 1092 aa18.14■□□□□ 0.49
PTCH1-226ENST00000553011 COL11A2P13942 1736 aaPredicted RBP18.13■□□□□ 0.49
PTCH1-226ENST00000553011 DLEC1Q9Y238 1755 aa18.13■□□□□ 0.49
PTCH1-226ENST00000553011 A0A0G2JLW4 131 aa18.13■□□□□ 0.49
PTCH1-226ENST00000553011 DPEP1P16444 411 aa18.13■□□□□ 0.49
PTCH1-226ENST00000553011 TGFB2P61812 414 aa18.13■□□□□ 0.49
PTCH1-226ENST00000553011 NPHP1O15259 732 aa18.12■□□□□ 0.49
PTCH1-226ENST00000553011 CHRNA5P30532 468 aa18.12■□□□□ 0.49
PTCH1-226ENST00000553011 TCIRG1Q13488 830 aa18.12■□□□□ 0.49
PTCH1-226ENST00000553011 HSP90AB3PQ58FF7 597 aa18.12■□□□□ 0.49
PTCH1-226ENST00000553011 SUSD4Q5VX71 490 aa18.12■□□□□ 0.49
PTCH1-226ENST00000553011 RIC3Q7Z5B4 369 aa18.11■□□□□ 0.49
PTCH1-226ENST00000553011 PELP1Q8IZL8 1130 aaKnown RBP18.11■□□□□ 0.49
PTCH1-226ENST00000553011 CACNA1SQ13698 1873 aa18.1■□□□□ 0.49
PTCH1-226ENST00000553011 TNRC6CQ9HCJ0 1690 aaKnown RBP18.1■□□□□ 0.49
PTCH1-226ENST00000553011 KCNA3P22001 575 aa18.1■□□□□ 0.49
PTCH1-226ENST00000553011 ST5P78524 1137 aa18.1■□□□□ 0.49
PTCH1-226ENST00000553011 TPTE2Q6XPS3 522 aa18.1■□□□□ 0.49
PTCH1-226ENST00000553011 NUTM1Q86Y26 1132 aa18.1■□□□□ 0.49
PTCH1-226ENST00000553011 ZNF428Q96B54 188 aa18.1■□□□□ 0.49
PTCH1-226ENST00000553011 ADCY9O60503 1353 aa18.09■□□□□ 0.49
PTCH1-226ENST00000553011 ABCC12Q96J65 1359 aa18.09■□□□□ 0.49
PTCH1-226ENST00000553011 IBTKQ9P2D0 1353 aaPredicted RBP18.09■□□□□ 0.49
PTCH1-226ENST00000553011 ZBED9Q6R2W3 1325 aa18.09■□□□□ 0.49
PTCH1-226ENST00000553011 ATP5J2-PTCD1G3V325 749 aa18.09■□□□□ 0.49
PTCH1-226ENST00000553011 NTSR2O95665 410 aa18.09■□□□□ 0.49
PTCH1-226ENST00000553011 DDX58O95786 925 aaKnown RBP18.09■□□□□ 0.49
PTCH1-226ENST00000553011 FLIIQ13045 1269 aa18.09■□□□□ 0.49
PTCH1-226ENST00000553011 GPR162Q16538 588 aa18.09■□□□□ 0.49
PTCH1-226ENST00000553011 PARP10Q53GL7 1025 aa18.09■□□□□ 0.49
PTCH1-226ENST00000553011 NLRP10Q86W26 655 aa18.09■□□□□ 0.49
PTCH1-226ENST00000553011 ISCA1Q9BUE6 129 aa18.09■□□□□ 0.49
PTCH1-226ENST00000553011 BRIP1Q9BX63 1249 aa18.09■□□□□ 0.49
PTCH1-226ENST00000553011 PI4KAP2A4QPH2 592 aa18.08■□□□□ 0.48
PTCH1-226ENST00000553011 YBX3P16989 372 aaKnown RBP eCLIP18.08■□□□□ 0.48
PTCH1-226ENST00000553011 GTF2E1P29083 439 aaPredicted RBP18.08■□□□□ 0.48
PTCH1-226ENST00000553011 ERFEQ4G0M1 354 aa18.08■□□□□ 0.48
PTCH1-226ENST00000553011 C2CD5Q86YS7 1000 aa18.08■□□□□ 0.48
PTCH1-226ENST00000553011 PI4KAP1Q8N8J0 262 aa18.08■□□□□ 0.48
PTCH1-226ENST00000553011 NYXQ9GZU5 481 aa18.08■□□□□ 0.48
PTCH1-226ENST00000553011 ARFGEF1Q9Y6D6 1849 aa18.07■□□□□ 0.48
PTCH1-226ENST00000553011 DCAF8L1A6NGE4 600 aa18.07■□□□□ 0.48
PTCH1-226ENST00000553011 PDE6BP35913 854 aa18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms