RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 USP44Q9H0E7 712 aa6.56□□□□□ -1.36
LIMA1-212ENST00000552491 FAM208AQ9UK61 1670 aaKnown RBP6.56□□□□□ -1.36
LIMA1-212ENST00000552491 TOPAZ1Q8N9V7 1692 aa6.56□□□□□ -1.36
LIMA1-212ENST00000552491 HSPA4P34932 840 aa6.56□□□□□ -1.36
LIMA1-212ENST00000552491 CSPP1Q1MSJ5 1256 aa6.56□□□□□ -1.36
LIMA1-212ENST00000552491 C17orf53Q8N3J3 647 aaPredicted RBP6.56□□□□□ -1.36
LIMA1-212ENST00000552491 RTF1Q92541 710 aaKnown RBP6.56□□□□□ -1.36
LIMA1-212ENST00000552491 SIRT1Q96EB6 747 aa6.56□□□□□ -1.36
LIMA1-212ENST00000552491 L3MBTL3Q96JM7 780 aaPredicted RBP6.56□□□□□ -1.36
LIMA1-212ENST00000552491 ARID3AQ99856 593 aa6.56□□□□□ -1.36
LIMA1-212ENST00000552491 CNPY2Q9Y2B0 182 aa6.56□□□□□ -1.36
LIMA1-212ENST00000552491 FMN2Q9NZ56 1722 aa6.56□□□□□ -1.36
LIMA1-212ENST00000552491 SSH2Q76I76 1423 aa6.55□□□□□ -1.36
LIMA1-212ENST00000552491 ARHGEF10O15013 1369 aa6.55□□□□□ -1.36
LIMA1-212ENST00000552491 KDRP35968 1356 aa6.55□□□□□ -1.36
LIMA1-212ENST00000552491 PLEKHG3A1L390 1219 aa6.55□□□□□ -1.36
LIMA1-212ENST00000552491 CPA1P15085 419 aa6.55□□□□□ -1.36
LIMA1-212ENST00000552491 MCCP23508 829 aa6.55□□□□□ -1.36
LIMA1-212ENST00000552491 TSC1Q92574 1164 aa6.55□□□□□ -1.36
LIMA1-212ENST00000552491 USP25Q9UHP3 1055 aa6.55□□□□□ -1.36
LIMA1-212ENST00000552491 GNAI3P08754 354 aa6.55□□□□□ -1.36
LIMA1-212ENST00000552491 MKRN3Q13064 507 aaKnown RBP6.55□□□□□ -1.36
LIMA1-212ENST00000552491 SASS6Q6UVJ0 657 aa6.55□□□□□ -1.36
LIMA1-212ENST00000552491 PI4K2BQ8TCG2 481 aa6.55□□□□□ -1.36
LIMA1-212ENST00000552491 TTC14Q96N46 770 aa6.55□□□□□ -1.36
LIMA1-212ENST00000552491 STK31Q9BXU1 1019 aa6.55□□□□□ -1.36
LIMA1-212ENST00000552491 AGLP35573 1532 aa6.55□□□□□ -1.36
LIMA1-212ENST00000552491 IGSF1Q8N6C5 1336 aa6.54□□□□□ -1.36
LIMA1-212ENST00000552491 LARGE1O95461 756 aa6.54□□□□□ -1.36
LIMA1-212ENST00000552491 RUFY3Q7L099 469 aa6.54□□□□□ -1.36
LIMA1-212ENST00000552491 IL17REQ8NFR9 667 aa6.54□□□□□ -1.36
LIMA1-212ENST00000552491 MAP7D2Q96T17 732 aa6.54□□□□□ -1.36
LIMA1-212ENST00000552491 PHAXQ9H814 394 aaKnown RBP6.54□□□□□ -1.36
LIMA1-212ENST00000552491 TTC12Q9H892 705 aaPredicted RBP6.54□□□□□ -1.36
LIMA1-212ENST00000552491 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.54□□□□□ -1.362e-8■■■■■ 37.9
LIMA1-212ENST00000552491 SNX14Q9Y5W7 946 aa6.54□□□□□ -1.36
LIMA1-212ENST00000552491 ADAMTS13Q76LX8 1427 aa6.54□□□□□ -1.36
LIMA1-212ENST00000552491 LRRC37A3O60309 1634 aa6.54□□□□□ -1.36
LIMA1-212ENST00000552491 SOS1Q07889 1333 aaPredicted RBP6.54□□□□□ -1.36
LIMA1-212ENST00000552491 RAD50Q92878 1312 aa6.54□□□□□ -1.36
LIMA1-212ENST00000552491 WDR33Q9C0J8 1336 aaKnown RBP6.54□□□□□ -1.36
LIMA1-212ENST00000552491 DYNC1I1O14576 645 aa6.54□□□□□ -1.36
LIMA1-212ENST00000552491 SGSM2O43147 1006 aa6.54□□□□□ -1.36
LIMA1-212ENST00000552491 AP5Z1O43299 807 aa6.54□□□□□ -1.36
LIMA1-212ENST00000552491 PTMAP06454 111 aaKnown RBP6.54□□□□□ -1.36
LIMA1-212ENST00000552491 HCLS1P14317 486 aaPredicted RBP6.54□□□□□ -1.36
LIMA1-212ENST00000552491 AK2P54819 239 aa6.54□□□□□ -1.36
LIMA1-212ENST00000552491 PPP1R42Q7Z4L9 355 aa6.54□□□□□ -1.36
LIMA1-212ENST00000552491 TMEM87AQ8NBN3 555 aa6.54□□□□□ -1.36
LIMA1-212ENST00000552491 SSH3Q8TE77 659 aa6.54□□□□□ -1.36
LIMA1-212ENST00000552491 LSG1Q9H089 658 aaKnown RBP6.54□□□□□ -1.36
LIMA1-212ENST00000552491 N4BP2Q86UW6 1770 aaPredicted RBP6.54□□□□□ -1.36
LIMA1-212ENST00000552491 CACNA1FO60840 1977 aa6.54□□□□□ -1.36
LIMA1-212ENST00000552491 SYT1P21579 422 aa6.53□□□□□ -1.36
LIMA1-212ENST00000552491 KIAA2012Q0VF49 1180 aa6.53□□□□□ -1.36
LIMA1-212ENST00000552491 COL9A3Q14050 684 aaPredicted RBP6.53□□□□□ -1.36
LIMA1-212ENST00000552491 CCDC30Q5VVM6 783 aa6.53□□□□□ -1.36
LIMA1-212ENST00000552491 SYAP1Q96A49 352 aaPredicted RBP6.53□□□□□ -1.36
LIMA1-212ENST00000552491 EPB41L2O43491 1005 aaKnown RBP6.53□□□□□ -1.36
LIMA1-212ENST00000552491 SURF6O75683 361 aaKnown RBP6.53□□□□□ -1.36
LIMA1-212ENST00000552491 ADCY5O95622 1261 aa6.53□□□□□ -1.36
LIMA1-212ENST00000552491 ZSCAN22P10073 491 aaPredicted RBP6.53□□□□□ -1.36
LIMA1-212ENST00000552491 DPY19L2Q6NUT2 758 aa6.53□□□□□ -1.36
LIMA1-212ENST00000552491 RHPN1Q8TCX5 695 aa6.53□□□□□ -1.36
LIMA1-212ENST00000552491 FUCA2Q9BTY2 467 aa6.53□□□□□ -1.36
LIMA1-212ENST00000552491 SPG7Q9UQ90 795 aa6.53□□□□□ -1.36
LIMA1-212ENST00000552491 RGPD8O14715 1765 aaPredicted RBP6.53□□□□□ -1.36
LIMA1-212ENST00000552491 SBNO1A3KN83 1393 aa6.53□□□□□ -1.36
LIMA1-212ENST00000552491 FLT4P35916 1363 aa6.53□□□□□ -1.36
LIMA1-212ENST00000552491 AOX1Q06278 1338 aa6.53□□□□□ -1.36
LIMA1-212ENST00000552491 FAM177BA6PVY3 158 aa6.53□□□□□ -1.36
LIMA1-212ENST00000552491 STX6O43752 255 aa6.53□□□□□ -1.36
LIMA1-212ENST00000552491 NBPF7P0C2Y1 421 aaPredicted RBP6.53□□□□□ -1.36
LIMA1-212ENST00000552491 UBTFL1P0CB47 393 aaPredicted RBP6.53□□□□□ -1.36
LIMA1-212ENST00000552491 LTKP29376 864 aa6.53□□□□□ -1.36
LIMA1-212ENST00000552491 ST3GAL1Q11201 340 aa6.53□□□□□ -1.36
LIMA1-212ENST00000552491 CCDC183Q5T5S1 534 aa6.53□□□□□ -1.36
LIMA1-212ENST00000552491 ZNF710Q8N1W2 664 aa6.53□□□□□ -1.36
LIMA1-212ENST00000552491 PRDM4Q9UKN5 801 aa6.53□□□□□ -1.36
LIMA1-212ENST00000552491 PTPRUQ92729 1446 aa6.52□□□□□ -1.36
LIMA1-212ENST00000552491 NWD1Q149M9 1564 aa6.52□□□□□ -1.37
LIMA1-212ENST00000552491 GNAT3A8MTJ3 354 aa6.52□□□□□ -1.37
LIMA1-212ENST00000552491 FIBPO43427 364 aa6.52□□□□□ -1.37
LIMA1-212ENST00000552491 PHF14O94880 888 aa6.52□□□□□ -1.37
LIMA1-212ENST00000552491 HOXB3P14651 431 aaPredicted RBP6.52□□□□□ -1.37
LIMA1-212ENST00000552491 NOLC1Q14978 699 aaKnown RBP eCLIP6.52□□□□□ -1.37
LIMA1-212ENST00000552491 ADCK5Q3MIX3 580 aa6.52□□□□□ -1.37
LIMA1-212ENST00000552491 GIMAP6Q6P9H5 292 aa6.52□□□□□ -1.37
LIMA1-212ENST00000552491 CWC27Q6UX04 472 aaKnown RBP6.52□□□□□ -1.37
LIMA1-212ENST00000552491 DDX54Q8TDD1 881 aaKnown RBP6.52□□□□□ -1.37
LIMA1-212ENST00000552491 PIBF1Q8WXW3 757 aa6.52□□□□□ -1.37
LIMA1-212ENST00000552491 RNF166Q96A37 237 aaPredicted RBP6.52□□□□□ -1.37
LIMA1-212ENST00000552491 F13A1P00488 732 aa6.52□□□□□ -1.37
LIMA1-212ENST00000552491 AMPHP49418 695 aa6.52□□□□□ -1.37
LIMA1-212ENST00000552491 PTH1RQ03431 593 aa6.52□□□□□ -1.37
LIMA1-212ENST00000552491 UVSSAQ2YD98 709 aa6.52□□□□□ -1.37
LIMA1-212ENST00000552491 MTERF4Q7Z6M4 381 aaKnown RBP6.52□□□□□ -1.37
LIMA1-212ENST00000552491 FAM184AQ8NB25 1140 aa6.52□□□□□ -1.37
LIMA1-212ENST00000552491 MYRIPQ8NFW9 859 aa6.52□□□□□ -1.37
LIMA1-212ENST00000552491 SLC26A8Q96RN1 970 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 76.5 ms