RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 SMIM5Q71RC9 77 aa10.43□□□□□ -0.74
NEK3-201ENST00000550331 KIAA1551Q9HCM1 1747 aa10.42□□□□□ -0.74
NEK3-201ENST00000550331 PTPN5P54829 565 aa10.42□□□□□ -0.74
NEK3-201ENST00000550331 MORC1Q86VD1 984 aa10.42□□□□□ -0.74
NEK3-201ENST00000550331 KDM6AO15550 1401 aaPredicted RBP10.41□□□□□ -0.74
NEK3-201ENST00000550331 ZNF831Q5JPB2 1677 aa10.41□□□□□ -0.74
NEK3-201ENST00000550331 COL13A1Q5TAT6 717 aaPredicted RBP10.41□□□□□ -0.74
NEK3-201ENST00000550331 ZNF530Q6P9A1 599 aaPredicted RBP10.41□□□□□ -0.74
NEK3-201ENST00000550331 CCER1Q8TC90 406 aaPredicted RBP10.41□□□□□ -0.74
NEK3-201ENST00000550331 NMRK2Q9NPI5 230 aa10.41□□□□□ -0.74
NEK3-201ENST00000550331 CNTNAP4Q9C0A0 1308 aa10.4□□□□□ -0.74
NEK3-201ENST00000550331 RC3H1Q5TC82 1133 aaKnown RBP10.4□□□□□ -0.74
NEK3-201ENST00000550331 RTCBQ9Y3I0 505 aaKnown RBP10.4□□□□□ -0.74
NEK3-201ENST00000550331 KNSTRNQ9Y448 316 aa10.4□□□□□ -0.74
NEK3-201ENST00000550331 PXDNLA1KZ92 1463 aa10.4□□□□□ -0.74
NEK3-201ENST00000550331 BRCA1P38398 1863 aaKnown RBP10.4□□□□□ -0.75
NEK3-201ENST00000550331 PSEN2P49810 448 aa10.39□□□□□ -0.75
NEK3-201ENST00000550331 MTHFSP49914 203 aa10.39□□□□□ -0.75
NEK3-201ENST00000550331 CABP4P57796 275 aa10.39□□□□□ -0.75
NEK3-201ENST00000550331 HTRA3P83110 453 aa10.39□□□□□ -0.75
NEK3-201ENST00000550331 C1orf141Q5JVX7 400 aa10.39□□□□□ -0.75
NEK3-201ENST00000550331 TRAPPC3LQ5T215 181 aa10.39□□□□□ -0.75
NEK3-201ENST00000550331 ARHGAP27Q6ZUM4 889 aa10.39□□□□□ -0.75
NEK3-201ENST00000550331 AEBP1Q8IUX7 1158 aa10.39□□□□□ -0.75
NEK3-201ENST00000550331 C16orf71Q8IYS4 520 aaPredicted RBP10.39□□□□□ -0.75
NEK3-201ENST00000550331 NLGN1Q8N2Q7 840 aa10.39□□□□□ -0.75
NEK3-201ENST00000550331 RBM46Q8TBY0 533 aaKnown RBP10.39□□□□□ -0.75
NEK3-201ENST00000550331 KLRG1Q96E93 195 aa10.39□□□□□ -0.75
NEK3-201ENST00000550331 SLC4A9Q96Q91 983 aa10.39□□□□□ -0.75
NEK3-201ENST00000550331 BCS1LQ9Y276 419 aa10.39□□□□□ -0.75
NEK3-201ENST00000550331 ARFGEF1Q9Y6D6 1849 aa10.38□□□□□ -0.75
NEK3-201ENST00000550331 PCNTO95613 3336 aa10.38□□□□□ -0.75
NEK3-201ENST00000550331 MMP10P09238 476 aa10.38□□□□□ -0.75
NEK3-201ENST00000550331 IL13P35225 146 aa10.38□□□□□ -0.75
NEK3-201ENST00000550331 AMER1Q5JTC6 1135 aaPredicted RBP10.38□□□□□ -0.75
NEK3-201ENST00000550331 SULT6B1Q6IMI4 303 aa10.38□□□□□ -0.75
NEK3-201ENST00000550331 TNS4Q8IZW8 715 aa10.38□□□□□ -0.75
NEK3-201ENST00000550331 SPOCK2Q92563 424 aa10.38□□□□□ -0.75
NEK3-201ENST00000550331 A0A0G2JLW4 131 aa10.37□□□□□ -0.75
NEK3-201ENST00000550331 C2orf72A6NCS6 295 aa10.37□□□□□ -0.75
NEK3-201ENST00000550331 RPS6KA4O75676 772 aa10.37□□□□□ -0.75
NEK3-201ENST00000550331 TGFB2P61812 414 aa10.37□□□□□ -0.75
NEK3-201ENST00000550331 C10orf71Q711Q0 1435 aa10.37□□□□□ -0.75
NEK3-201ENST00000550331 JMYQ8N9B5 988 aa10.37□□□□□ -0.75
NEK3-201ENST00000550331 ARHGEF1Q92888 912 aaKnown RBP10.37□□□□□ -0.75
NEK3-201ENST00000550331 KIF7Q2M1P5 1343 aa10.36□□□□□ -0.75
NEK3-201ENST00000550331 COL5A3P25940 1745 aaPredicted RBP10.36□□□□□ -0.75
NEK3-201ENST00000550331 FCHSD2O94868 740 aa10.36□□□□□ -0.75
NEK3-201ENST00000550331 RFC4P35249 363 aa10.36□□□□□ -0.75
NEK3-201ENST00000550331 FSTL1Q12841 308 aa10.36□□□□□ -0.75
NEK3-201ENST00000550331 C4AP0C0L4 1744 aa10.36□□□□□ -0.75
NEK3-201ENST00000550331 TNRC6CQ9HCJ0 1690 aaKnown RBP10.35□□□□□ -0.75
NEK3-201ENST00000550331 PTCD1O75127 700 aaKnown RBP10.35□□□□□ -0.75
NEK3-201ENST00000550331 GYS1P13807 737 aa10.35□□□□□ -0.75
NEK3-201ENST00000550331 PRELPP51888 382 aa10.35□□□□□ -0.75
NEK3-201ENST00000550331 AKAP4Q5JQC9 854 aa10.35□□□□□ -0.75
NEK3-201ENST00000550331 C9orf131Q5VYM1 1079 aa10.35□□□□□ -0.75
NEK3-201ENST00000550331 NFATC2IPQ8NCF5 419 aa10.35□□□□□ -0.75
NEK3-201ENST00000550331 CCDC87Q9NVE4 849 aa10.35□□□□□ -0.75
NEK3-201ENST00000550331 MRC1P22897 1456 aa10.35□□□□□ -0.75
NEK3-201ENST00000550331 SBF1O95248 1867 aa10.34□□□□□ -0.75
NEK3-201ENST00000550331 KCPQ6ZWJ8 1503 aa10.34□□□□□ -0.75
NEK3-201ENST00000550331 DPEP1P16444 411 aa10.34□□□□□ -0.75
NEK3-201ENST00000550331 PARP3Q9Y6F1 533 aa10.34□□□□□ -0.75
NEK3-201ENST00000550331 KDM2BQ8NHM5 1336 aa10.33□□□□□ -0.76
NEK3-201ENST00000550331 PER1O15534 1290 aaPredicted RBP10.33□□□□□ -0.76
NEK3-201ENST00000550331 CRKLP46109 303 aaKnown RBP10.33□□□□□ -0.76
NEK3-201ENST00000550331 SLC52A2Q9HAB3 445 aa10.33□□□□□ -0.76
NEK3-201ENST00000550331 USP42Q9H9J4 1324 aaKnown RBP10.33□□□□□ -0.76
NEK3-201ENST00000550331 NPC1L1Q9UHC9 1359 aa10.32□□□□□ -0.76
NEK3-201ENST00000550331 DIAPH1O60610 1272 aaKnown RBP10.32□□□□□ -0.76
NEK3-201ENST00000550331 RRAGCQ9HB90 399 aa10.32□□□□□ -0.76
NEK3-201ENST00000550331 TJP1Q07157 1748 aa10.32□□□□□ -0.76
NEK3-201ENST00000550331 INTS5Q6P9B9 1019 aaKnown RBP10.31□□□□□ -0.76
NEK3-201ENST00000550331 THSD4Q6ZMP0 1018 aa10.31□□□□□ -0.76
NEK3-201ENST00000550331 RNF181Q9P0P0 153 aa10.31□□□□□ -0.76
NEK3-201ENST00000550331 MYH14Q7Z406 1995 aaKnown RBP10.3□□□□□ -0.76
NEK3-201ENST00000550331 RNMTO43148 476 aaKnown RBP10.3□□□□□ -0.76
NEK3-201ENST00000550331 HMOX1P09601 288 aa10.3□□□□□ -0.76
NEK3-201ENST00000550331 LAPTM4AQ15012 233 aa10.3□□□□□ -0.76
NEK3-201ENST00000550331 MTHFSDQ2M296 383 aaKnown RBP10.3□□□□□ -0.76
NEK3-201ENST00000550331 PPP4R3BQ5MIZ7 849 aa10.3□□□□□ -0.76
NEK3-201ENST00000550331 DNAJC10Q8IXB1 793 aa10.3□□□□□ -0.76
NEK3-201ENST00000550331 VSIG10Q8N0Z9 540 aa10.3□□□□□ -0.76
NEK3-201ENST00000550331 SMC1BQ8NDV3 1235 aa10.3□□□□□ -0.76
NEK3-201ENST00000550331 LGR6Q9HBX8 967 aa10.3□□□□□ -0.76
NEK3-201ENST00000550331 PIM2Q9P1W9 311 aa10.3□□□□□ -0.76
NEK3-201ENST00000550331 SRP68Q9UHB9 627 aaKnown RBP10.3□□□□□ -0.76
NEK3-201ENST00000550331 ADAMTS7Q9UKP4 1686 aa10.3□□□□□ -0.76
NEK3-201ENST00000550331 SOS1Q07889 1333 aaPredicted RBP10.3□□□□□ -0.76
NEK3-201ENST00000550331 CCDC88AQ3V6T2 1871 aa10.3□□□□□ -0.76
NEK3-201ENST00000550331 SCN11AQ9UI33 1791 aa10.29□□□□□ -0.76
NEK3-201ENST00000550331 HSPA1AP0DMV8 641 aaKnown RBP10.29□□□□□ -0.76
NEK3-201ENST00000550331 HSPA1BP0DMV9 641 aaKnown RBP10.29□□□□□ -0.76
NEK3-201ENST00000550331 CYP19A1P11511 503 aaPredicted RBP10.29□□□□□ -0.76
NEK3-201ENST00000550331 KCNA3P22001 575 aa10.29□□□□□ -0.76
NEK3-201ENST00000550331 DDR1Q08345 913 aa10.29□□□□□ -0.76
NEK3-201ENST00000550331 DALRD3Q5D0E6 543 aaKnown RBP10.29□□□□□ -0.76
NEK3-201ENST00000550331 CC2D1BQ5T0F9 858 aaKnown RBP10.29□□□□□ -0.76
NEK3-201ENST00000550331 COL3A1P02461 1466 aaPredicted RBP10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms