RNA–Protein interactions for RNA: ENST00000550136.1

PTCH1-220, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 2,388 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-220ENST00000550136 KIF1BPQ96EK5 621 aa11.19□□□□□ -0.62
PTCH1-220ENST00000550136 CEP89Q96ST8 783 aa11.19□□□□□ -0.62
PTCH1-220ENST00000550136 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.19□□□□□ -0.62
PTCH1-220ENST00000550136 METP08581 1390 aa11.19□□□□□ -0.62
PTCH1-220ENST00000550136 SLIT2O94813 1529 aa11.19□□□□□ -0.62
PTCH1-220ENST00000550136 TPM3P06753 285 aa11.19□□□□□ -0.62
PTCH1-220ENST00000550136 BAG6P46379 1132 aa11.19□□□□□ -0.62
PTCH1-220ENST00000550136 CWC15Q9P013 229 aaKnown RBP11.19□□□□□ -0.62
PTCH1-220ENST00000550136 HSP90AB4PQ58FF6 505 aa11.18□□□□□ -0.62
PTCH1-220ENST00000550136 KANK4Q5T7N3 995 aaPredicted RBP11.18□□□□□ -0.62
PTCH1-220ENST00000550136 SRLQ86TD4 932 aa11.18□□□□□ -0.62
PTCH1-220ENST00000550136 ORAI2Q96SN7 254 aa11.18□□□□□ -0.62
PTCH1-220ENST00000550136 ZBTB7CA1YPR0 619 aa11.18□□□□□ -0.62
PTCH1-220ENST00000550136 PACS2Q86VP3 889 aa11.18□□□□□ -0.62
PTCH1-220ENST00000550136 HSCBQ8IWL3 235 aa11.18□□□□□ -0.62
PTCH1-220ENST00000550136 SMC5Q8IY18 1101 aa11.18□□□□□ -0.62
PTCH1-220ENST00000550136 PLEKHG2Q9H7P9 1386 aa11.18□□□□□ -0.62
PTCH1-220ENST00000550136 E9PCH4 1651 aa11.17□□□□□ -0.62
PTCH1-220ENST00000550136 C19orf67A6NJJ6 358 aa11.17□□□□□ -0.62
PTCH1-220ENST00000550136 CCT2P78371 535 aaKnown RBP11.17□□□□□ -0.62
PTCH1-220ENST00000550136 ZSCAN26Q16670 478 aa11.17□□□□□ -0.62
PTCH1-220ENST00000550136 TSPAN18Q96SJ8 248 aa11.17□□□□□ -0.62
PTCH1-220ENST00000550136 LCMT1Q9UIC8 334 aa11.17□□□□□ -0.62
PTCH1-220ENST00000550136 PRIM1P49642 420 aaKnown RBP11.17□□□□□ -0.62
PTCH1-220ENST00000550136 RBM5P52756 815 aaKnown RBP eCLIP11.17□□□□□ -0.62
PTCH1-220ENST00000550136 EVX2Q03828 476 aa11.17□□□□□ -0.62
PTCH1-220ENST00000550136 SEPT12Q8IYM1 358 aa11.17□□□□□ -0.62
PTCH1-220ENST00000550136 ZNF397Q8NF99 534 aaPredicted RBP11.17□□□□□ -0.62
PTCH1-220ENST00000550136 CHIC2Q9UKJ5 165 aa11.17□□□□□ -0.62
PTCH1-220ENST00000550136 PXDNQ92626 1479 aa11.17□□□□□ -0.62
PTCH1-220ENST00000550136 ANKRD50Q9ULJ7 1429 aa11.16□□□□□ -0.62
PTCH1-220ENST00000550136 ONECUT3O60422 494 aaPredicted RBP11.16□□□□□ -0.62
PTCH1-220ENST00000550136 MAGEA9P43362 315 aa11.16□□□□□ -0.62
PTCH1-220ENST00000550136 E2F4Q16254 413 aa11.16□□□□□ -0.62
PTCH1-220ENST00000550136 KRBA2Q6ZNG9 492 aa11.16□□□□□ -0.62
PTCH1-220ENST00000550136 NPHP3Q7Z494 1330 aa11.16□□□□□ -0.62
PTCH1-220ENST00000550136 RABEP1Q15276 862 aa11.16□□□□□ -0.62
PTCH1-220ENST00000550136 IFFO2Q5TF58 517 aa11.16□□□□□ -0.62
PTCH1-220ENST00000550136 JAKMIP3Q5VZ66 844 aa11.16□□□□□ -0.62
PTCH1-220ENST00000550136 ERCC4Q92889 916 aaPredicted RBP11.16□□□□□ -0.62
PTCH1-220ENST00000550136 PAX7P23759 505 aa11.15□□□□□ -0.62
PTCH1-220ENST00000550136 IRX1P78414 480 aaPredicted RBP11.15□□□□□ -0.62
PTCH1-220ENST00000550136 RRP15Q9Y3B9 282 aaKnown RBP11.15□□□□□ -0.62
PTCH1-220ENST00000550136 CHADLQ6NUI6 762 aa11.14□□□□□ -0.63
PTCH1-220ENST00000550136 KRT27Q7Z3Y8 459 aa11.14□□□□□ -0.63
PTCH1-220ENST00000550136 MORC1Q86VD1 984 aa11.14□□□□□ -0.63
PTCH1-220ENST00000550136 CCDC191Q8NCU4 936 aa11.14□□□□□ -0.63
PTCH1-220ENST00000550136 PIK3R5Q8WYR1 880 aa11.14□□□□□ -0.63
PTCH1-220ENST00000550136 BMS1Q14692 1282 aaKnown RBP11.14□□□□□ -0.63
PTCH1-220ENST00000550136 PRAG1Q86YV5 1406 aa11.14□□□□□ -0.63
PTCH1-220ENST00000550136 RGPD1P0DJD0 1748 aa11.13□□□□□ -0.63
PTCH1-220ENST00000550136 VPS72Q15906 364 aa11.13□□□□□ -0.63
PTCH1-220ENST00000550136 TEX35Q5T0J7 233 aa11.13□□□□□ -0.63
PTCH1-220ENST00000550136 ARHGEF1Q92888 912 aaKnown RBP11.13□□□□□ -0.63
PTCH1-220ENST00000550136 TACO1Q9BSH4 297 aaKnown RBP11.13□□□□□ -0.63
PTCH1-220ENST00000550136 TEX13AQ9BXU3 409 aaPredicted RBP11.13□□□□□ -0.63
PTCH1-220ENST00000550136 ANAPC4Q9UJX5 808 aa11.13□□□□□ -0.63
PTCH1-220ENST00000550136 NEFHP12036 1026 aa11.13□□□□□ -0.63
PTCH1-220ENST00000550136 R3HDM1Q15032 1099 aaKnown RBP11.13□□□□□ -0.63
PTCH1-220ENST00000550136 LRSAM1Q6UWE0 723 aa11.13□□□□□ -0.63
PTCH1-220ENST00000550136 ETAA1Q9NY74 926 aa11.13□□□□□ -0.63
PTCH1-220ENST00000550136 UVSSAQ2YD98 709 aa11.12□□□□□ -0.63
PTCH1-220ENST00000550136 CAVIN1Q6NZI2 390 aaKnown RBP11.12□□□□□ -0.63
PTCH1-220ENST00000550136 GPT2Q8TD30 523 aa11.12□□□□□ -0.63
PTCH1-220ENST00000550136 SUDS3Q9H7L9 328 aaPredicted RBP11.12□□□□□ -0.63
PTCH1-220ENST00000550136 ST7Q9NRC1 585 aa11.12□□□□□ -0.63
PTCH1-220ENST00000550136 SMC3Q9UQE7 1217 aa11.12□□□□□ -0.63
PTCH1-220ENST00000550136 DISP2A7MBM2 1401 aa11.12□□□□□ -0.63
PTCH1-220ENST00000550136 ANKRD18BA2A2Z9 1011 aa11.12□□□□□ -0.63
PTCH1-220ENST00000550136 MMS22LQ6ZRQ5 1243 aa11.12□□□□□ -0.63
PTCH1-220ENST00000550136 NEK11Q8NG66 645 aa11.12□□□□□ -0.63
PTCH1-220ENST00000550136 KDM4CQ9H3R0 1056 aa11.12□□□□□ -0.63
PTCH1-220ENST00000550136 EIF3AQ14152 1382 aaKnown RBP11.12□□□□□ -0.63
PTCH1-220ENST00000550136 SENP3-EIF4A1A0A087X0R7 540 aa11.11□□□□□ -0.63
PTCH1-220ENST00000550136 POLD1P28340 1107 aa11.11□□□□□ -0.63
PTCH1-220ENST00000550136 TATDN2Q93075 761 aa11.11□□□□□ -0.63
PTCH1-220ENST00000550136 SNX21Q969T3 373 aa11.11□□□□□ -0.63
PTCH1-220ENST00000550136 USP32Q8NFA0 1604 aa11.11□□□□□ -0.63
PTCH1-220ENST00000550136 NWD2Q9ULI1 1742 aa11.11□□□□□ -0.63
PTCH1-220ENST00000550136 SMTNL1A8MU46 457 aa11.11□□□□□ -0.63
PTCH1-220ENST00000550136 CAND2O75155 1236 aa11.11□□□□□ -0.63
PTCH1-220ENST00000550136 SLFNL1Q499Z3 407 aa11.11□□□□□ -0.63
PTCH1-220ENST00000550136 KLHL23Q8NBE8 558 aa11.11□□□□□ -0.63
PTCH1-220ENST00000550136 PPM1EQ8WY54 764 aa11.11□□□□□ -0.63
PTCH1-220ENST00000550136 FAXDC2Q96IV6 333 aa11.11□□□□□ -0.63
PTCH1-220ENST00000550136 LRRFIP2Q9Y608 721 aaKnown RBP11.11□□□□□ -0.63
PTCH1-220ENST00000550136 ERCC3P19447 782 aa11.1□□□□□ -0.63
PTCH1-220ENST00000550136 KMT5BQ4FZB7 885 aa11.1□□□□□ -0.63
PTCH1-220ENST00000550136 C17orf53Q8N3J3 647 aaPredicted RBP11.1□□□□□ -0.63
PTCH1-220ENST00000550136 CCDC97Q96F63 343 aaPredicted RBP11.1□□□□□ -0.63
PTCH1-220ENST00000550136 ROBO2Q9HCK4 1378 aa11.1□□□□□ -0.63
PTCH1-220ENST00000550136 CDC42BPGQ6DT37 1551 aa11.1□□□□□ -0.63
PTCH1-220ENST00000550136 C21orf2O43822 256 aa11.1□□□□□ -0.63
PTCH1-220ENST00000550136 ADCY2Q08462 1091 aa11.1□□□□□ -0.63
PTCH1-220ENST00000550136 IQUBQ8NA54 791 aa11.1□□□□□ -0.63
PTCH1-220ENST00000550136 FBXO18Q8NFZ0 1043 aa11.1□□□□□ -0.63
PTCH1-220ENST00000550136 GOLGA5Q8TBA6 731 aa11.1□□□□□ -0.63
PTCH1-220ENST00000550136 HFM1A2PYH4 1435 aa11.1□□□□□ -0.63
PTCH1-220ENST00000550136 BAG4O95429 457 aaKnown RBP11.09□□□□□ -0.63
PTCH1-220ENST00000550136 CPP00450 1065 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms