RNA–Protein interactions for RNA: ENST00000550020.6

TMEM116-209, Transcript of transmembrane protein 116, human

TSL 4

Gene TMEM116, Length 572 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TMEM116-209	ENST00000550020	HSPA4	P34932	840 aa		10.83	□□□□□ -0.68
TMEM116-209	ENST00000550020	AIMP1	Q12904	312 aa	Known RBP	10.83	□□□□□ -0.68
TMEM116-209	ENST00000550020	GCKR	Q14397	625 aa		10.83	□□□□□ -0.68
TMEM116-209	ENST00000550020	PDIA6	Q15084	440 aa		10.83	□□□□□ -0.68
TMEM116-209	ENST00000550020	TICAM2	Q86XR7	235 aa		10.83	□□□□□ -0.68
TMEM116-209	ENST00000550020	ZCRB1	Q8TBF4	217 aa	Known RBP	10.83	□□□□□ -0.68
TMEM116-209	ENST00000550020	XAGE3	Q8WTP9	111 aa		10.83	□□□□□ -0.68
TMEM116-209	ENST00000550020	SCN11A	Q9UI33	1791 aa		10.82	□□□□□ -0.68
TMEM116-209	ENST00000550020	PKD1L3	Q7Z443	1732 aa		10.82	□□□□□ -0.68
TMEM116-209	ENST00000550020	PARP4	Q9UKK3	1724 aa	Known RBP	10.82	□□□□□ -0.68
TMEM116-209	ENST00000550020	NEURL1B	A8MQ27	555 aa		10.82	□□□□□ -0.68
TMEM116-209	ENST00000550020	PROSER3	Q2NL68	480 aa		10.82	□□□□□ -0.68
TMEM116-209	ENST00000550020	CWF19L2	Q2TBE0	894 aa	Known RBP	10.82	□□□□□ -0.68
TMEM116-209	ENST00000550020	BRINP3	Q76B58	766 aa		10.82	□□□□□ -0.68
TMEM116-209	ENST00000550020	COPS6	Q7L5N1	327 aa		10.82	□□□□□ -0.68
TMEM116-209	ENST00000550020	PLBD2	Q8NHP8	589 aa		10.82	□□□□□ -0.68
TMEM116-209	ENST00000550020	ZNF496	Q96IT1	587 aa	Predicted RBP	10.82	□□□□□ -0.68
TMEM116-209	ENST00000550020	SOS2	Q07890	1332 aa	Predicted RBP	10.82	□□□□□ -0.68
TMEM116-209	ENST00000550020	MYL6B	P14649	208 aa		10.81	□□□□□ -0.68
TMEM116-209	ENST00000550020	CUL4A	Q13619	759 aa		10.81	□□□□□ -0.68
TMEM116-209	ENST00000550020	TSHZ3	Q63HK5	1081 aa		10.81	□□□□□ -0.68
TMEM116-209	ENST00000550020	TOM1L2	Q6ZVM7	507 aa		10.81	□□□□□ -0.68
TMEM116-209	ENST00000550020	AACS	Q86V21	672 aa		10.81	□□□□□ -0.68
TMEM116-209	ENST00000550020	SUCLG2	Q96I99	432 aa		10.81	□□□□□ -0.68
TMEM116-209	ENST00000550020	MYD88	Q99836	296 aa		10.81	□□□□□ -0.68
TMEM116-209	ENST00000550020	CARD10	Q9BWT7	1032 aa		10.81	□□□□□ -0.68
TMEM116-209	ENST00000550020	FOXD4L1	Q9NU39	408 aa		10.81	□□□□□ -0.68
TMEM116-209	ENST00000550020	SLAIN2	Q9P270	581 aa		10.81	□□□□□ -0.68
TMEM116-209	ENST00000550020	FSD2	A1L4K1	749 aa		10.8	□□□□□ -0.68
TMEM116-209	ENST00000550020	CYP27B1	O15528	508 aa		10.8	□□□□□ -0.68
TMEM116-209	ENST00000550020	BAG4	O95429	457 aa	Known RBP	10.8	□□□□□ -0.68
TMEM116-209	ENST00000550020	IL2RB	P14784	551 aa		10.8	□□□□□ -0.68
TMEM116-209	ENST00000550020	ZKSCAN1	P17029	563 aa	Predicted RBP	10.8	□□□□□ -0.68
TMEM116-209	ENST00000550020	SSFA2	P28290	1259 aa		10.8	□□□□□ -0.68
TMEM116-209	ENST00000550020	SLC39A6	Q13433	755 aa		10.8	□□□□□ -0.68
TMEM116-209	ENST00000550020	NKX1-1	Q15270	411 aa	Predicted RBP	10.8	□□□□□ -0.68
TMEM116-209	ENST00000550020	CHRNA2	Q15822	529 aa		10.8	□□□□□ -0.68
TMEM116-209	ENST00000550020	KLHL40	Q2TBA0	621 aa		10.8	□□□□□ -0.68
TMEM116-209	ENST00000550020	RNF20	Q5VTR2	975 aa		10.8	□□□□□ -0.68
TMEM116-209	ENST00000550020	CABLES1	Q8TDN4	633 aa		10.8	□□□□□ -0.68
TMEM116-209	ENST00000550020	TMX3	Q96JJ7	454 aa		10.8	□□□□□ -0.68
TMEM116-209	ENST00000550020	BICC1	Q9H694	974 aa	Known RBP	10.8	□□□□□ -0.68
TMEM116-209	ENST00000550020	CRYBG1	Q9Y4K1	1723 aa		10.79	□□□□□ -0.68
TMEM116-209	ENST00000550020	CYP2E1	P05181	493 aa	Predicted RBP	10.79	□□□□□ -0.68
TMEM116-209	ENST00000550020	EVA1C	P58658	441 aa		10.79	□□□□□ -0.68
TMEM116-209	ENST00000550020	ANP32B	Q92688	251 aa	Known RBP	10.79	□□□□□ -0.68
TMEM116-209	ENST00000550020	ZSCAN31	Q96LW9	406 aa	Predicted RBP	10.79	□□□□□ -0.68
TMEM116-209	ENST00000550020	TEX13A	Q9BXU3	409 aa	Predicted RBP	10.79	□□□□□ -0.68
TMEM116-209	ENST00000550020	TM6SF1	Q9BZW5	370 aa		10.79	□□□□□ -0.68
TMEM116-209	ENST00000550020	COPRS	Q9NQ92	184 aa		10.79	□□□□□ -0.68
TMEM116-209	ENST00000550020	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	10.79	□□□□□ -0.68
TMEM116-209	ENST00000550020	STRCP1	A6NGW2	1772 aa		10.79	□□□□□ -0.68
TMEM116-209	ENST00000550020	RFX7	Q2KHR2	1363 aa		10.78	□□□□□ -0.68
TMEM116-209	ENST00000550020	RGPD5	Q99666	1765 aa		10.78	□□□□□ -0.68
TMEM116-209	ENST00000550020	PRAMEF22	A3QJZ6	481 aa		10.78	□□□□□ -0.68
TMEM116-209	ENST00000550020	MBD3	O95983	291 aa		10.78	□□□□□ -0.68
TMEM116-209	ENST00000550020	IGKV5-2	P06315	115 aa		10.78	□□□□□ -0.68
TMEM116-209	ENST00000550020	NCL	P19338	710 aa	Known RBP	10.78	□□□□□ -0.68
TMEM116-209	ENST00000550020	PSMA5	P28066	241 aa		10.78	□□□□□ -0.68
TMEM116-209	ENST00000550020	RABL6	Q3YEC7	729 aa	Predicted RBP	10.78	□□□□□ -0.68
TMEM116-209	ENST00000550020	UNC5CL	Q8IV45	518 aa		10.78	□□□□□ -0.68
TMEM116-209	ENST00000550020	DDX17	Q92841	729 aa	Known RBP	10.78	□□□□□ -0.68
TMEM116-209	ENST00000550020	GZF1	Q9H116	711 aa	Predicted RBP	10.78	□□□□□ -0.68
TMEM116-209	ENST00000550020	DDX49	Q9Y6V7	483 aa	Known RBP	10.78	□□□□□ -0.68
TMEM116-209	ENST00000550020	TUBGCP6	Q96RT7	1819 aa		10.78	□□□□□ -0.68
TMEM116-209	ENST00000550020	WDR33	Q9C0J8	1336 aa	Known RBP	10.78	□□□□□ -0.68
TMEM116-209	ENST00000550020	COL5A2	P05997	1499 aa	Predicted RBP	10.77	□□□□□ -0.69
TMEM116-209	ENST00000550020	HSPA2	P54652	639 aa		10.77	□□□□□ -0.69
TMEM116-209	ENST00000550020	CWC27	Q6UX04	472 aa	Known RBP	10.77	□□□□□ -0.69
TMEM116-209	ENST00000550020	LSG1	Q9H089	658 aa	Known RBP	10.77	□□□□□ -0.69
TMEM116-209	ENST00000550020	SH2B1	Q9NRF2	756 aa	Predicted RBP	10.77	□□□□□ -0.69
TMEM116-209	ENST00000550020	LIMCH1	Q9UPQ0	1083 aa		10.77	□□□□□ -0.69
TMEM116-209	ENST00000550020	ATP6V1D	Q9Y5K8	247 aa		10.77	□□□□□ -0.69
TMEM116-209	ENST00000550020	USP16	Q9Y5T5	823 aa		10.77	□□□□□ -0.69
TMEM116-209	ENST00000550020	LAMB4	A4D0S4	1761 aa		10.76	□□□□□ -0.69
TMEM116-209	ENST00000550020		A0A087WZG4	1122 aa		10.76	□□□□□ -0.69
TMEM116-209	ENST00000550020	SASH1	O94885	1247 aa		10.76	□□□□□ -0.69
TMEM116-209	ENST00000550020	KCNJ4	P48050	445 aa		10.76	□□□□□ -0.69
TMEM116-209	ENST00000550020	ANKRD1	Q15327	319 aa		10.76	□□□□□ -0.69
TMEM116-209	ENST00000550020	CSPP1	Q1MSJ5	1256 aa		10.76	□□□□□ -0.69
TMEM116-209	ENST00000550020	VPS53	Q5VIR6	699 aa		10.76	□□□□□ -0.69
TMEM116-209	ENST00000550020	MCTP1	Q6DN14	999 aa		10.76	□□□□□ -0.69
TMEM116-209	ENST00000550020	KLHL34	Q8N239	644 aa		10.76	□□□□□ -0.69
TMEM116-209	ENST00000550020	SYAP1	Q96A49	352 aa	Predicted RBP	10.76	□□□□□ -0.69
TMEM116-209	ENST00000550020	FSD1	Q9BTV5	496 aa		10.76	□□□□□ -0.69
TMEM116-209	ENST00000550020	SNRK	Q9NRH2	765 aa		10.76	□□□□□ -0.69
TMEM116-209	ENST00000550020	ATG3	Q9NT62	314 aa		10.76	□□□□□ -0.69
TMEM116-209	ENST00000550020	CWC25	Q9NXE8	425 aa	Predicted RBP	10.76	□□□□□ -0.69
TMEM116-209	ENST00000550020	HMG20B	Q9P0W2	317 aa		10.76	□□□□□ -0.69
TMEM116-209	ENST00000550020	SNX14	Q9Y5W7	946 aa		10.76	□□□□□ -0.69
TMEM116-209	ENST00000550020	CYP46A1	Q9Y6A2	500 aa		10.76	□□□□□ -0.69
TMEM116-209	ENST00000550020	MAP4K4	O95819	1239 aa	Predicted RBP	10.75	□□□□□ -0.69
TMEM116-209	ENST00000550020	ATP5J	P18859	108 aa		10.75	□□□□□ -0.69
TMEM116-209	ENST00000550020	KRT32	Q14532	448 aa		10.75	□□□□□ -0.69
TMEM116-209	ENST00000550020	LRRFIP1	Q32MZ4	808 aa	Known RBP	10.75	□□□□□ -0.69
TMEM116-209	ENST00000550020	LRP10	Q7Z4F1	713 aa		10.75	□□□□□ -0.69
TMEM116-209	ENST00000550020	VSIG10	Q8N0Z9	540 aa		10.75	□□□□□ -0.69
TMEM116-209	ENST00000550020	FAM43A	Q8N2R8	423 aa		10.75	□□□□□ -0.69
TMEM116-209	ENST00000550020	CCDC191	Q8NCU4	936 aa		10.75	□□□□□ -0.69
TMEM116-209	ENST00000550020	KCNB2	Q92953	911 aa		10.75	□□□□□ -0.69

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