RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 CTDP1Q9Y5B0 961 aaPredicted RBP19.22■□□□□ 0.67
CUX1-213ENST00000549414 NBPF6Q5VWK0 638 aa19.22■□□□□ 0.67
CUX1-213ENST00000549414 NBPF4Q96M43 638 aa19.22■□□□□ 0.67
CUX1-213ENST00000549414 PANK2Q9BZ23 570 aa19.22■□□□□ 0.67
CUX1-213ENST00000549414 NAT10Q9H0A0 1025 aaKnown RBP19.22■□□□□ 0.67
CUX1-213ENST00000549414 GJB2P29033 226 aa19.22■□□□□ 0.67
CUX1-213ENST00000549414 LINS1Q8NG48 757 aa19.22■□□□□ 0.67
CUX1-213ENST00000549414 SBNO1A3KN83 1393 aa19.21■□□□□ 0.67
CUX1-213ENST00000549414 PNMA6EA0A0J9YXQ4 647 aa19.21■□□□□ 0.67
CUX1-213ENST00000549414 LDHAL6AQ6ZMR3 332 aa19.21■□□□□ 0.67
CUX1-213ENST00000549414 PCMTD1Q96MG8 357 aaPredicted RBP19.21■□□□□ 0.67
CUX1-213ENST00000549414 C19orf44Q9H6X5 657 aa19.21■□□□□ 0.67
CUX1-213ENST00000549414 LRRIQ1Q96JM4 1722 aa19.21■□□□□ 0.67
CUX1-213ENST00000549414 XBP1P17861 261 aa19.21■□□□□ 0.67
CUX1-213ENST00000549414 ZSCAN25Q6NSZ9 544 aa19.21■□□□□ 0.67
CUX1-213ENST00000549414 ZFYVE16Q7Z3T8 1539 aa19.21■□□□□ 0.67
CUX1-213ENST00000549414 PLEKHG3A1L390 1219 aa19.21■□□□□ 0.67
CUX1-213ENST00000549414 CCDC69A6NI79 296 aa19.21■□□□□ 0.67
CUX1-213ENST00000549414 DTNBO60941 627 aa19.21■□□□□ 0.67
CUX1-213ENST00000549414 PDILTQ8N807 584 aa19.21■□□□□ 0.67
CUX1-213ENST00000549414 ZCRB1Q8TBF4 217 aaKnown RBP19.21■□□□□ 0.67
CUX1-213ENST00000549414 AKAP2Q9Y2D5 859 aa19.21■□□□□ 0.67
CUX1-213ENST00000549414 NPHP3Q7Z494 1330 aa19.21■□□□□ 0.66
CUX1-213ENST00000549414 RNMTO43148 476 aaKnown RBP19.2■□□□□ 0.66
CUX1-213ENST00000549414 TSR1Q2NL82 804 aaKnown RBP19.2■□□□□ 0.66
CUX1-213ENST00000549414 SH2B1Q9NRF2 756 aaPredicted RBP19.2■□□□□ 0.66
CUX1-213ENST00000549414 STX6O43752 255 aa19.2■□□□□ 0.66
CUX1-213ENST00000549414 TPM1P09493 284 aa19.2■□□□□ 0.66
CUX1-213ENST00000549414 IGHMBP2P38935 993 aaKnown RBP19.2■□□□□ 0.66
CUX1-213ENST00000549414 USP19O94966 1318 aa19.2■□□□□ 0.66
CUX1-213ENST00000549414 SNX21Q969T3 373 aa19.2■□□□□ 0.66
CUX1-213ENST00000549414 EXOC5O00471 708 aa19.19■□□□□ 0.66
CUX1-213ENST00000549414 ALDH1L1O75891 902 aa19.19■□□□□ 0.66
CUX1-213ENST00000549414 OLFM4Q6UX06 510 aa19.19■□□□□ 0.66
CUX1-213ENST00000549414 KLHDC4Q8TBB5 520 aa19.19■□□□□ 0.66
CUX1-213ENST00000549414 SOS1Q07889 1333 aaPredicted RBP19.19■□□□□ 0.66
CUX1-213ENST00000549414 TRIM22Q8IYM9 498 aa19.19■□□□□ 0.66
CUX1-213ENST00000549414 USP26Q9BXU7 913 aa19.19■□□□□ 0.66
CUX1-213ENST00000549414 MYOM2P54296 1465 aa19.19■□□□□ 0.66
CUX1-213ENST00000549414 CPA1P15085 419 aa19.19■□□□□ 0.66
CUX1-213ENST00000549414 CKAP2LQ8IYA6 745 aa19.19■□□□□ 0.66
CUX1-213ENST00000549414 RBM8AQ9Y5S9 174 aaKnown RBP19.19■□□□□ 0.66
CUX1-213ENST00000549414 NBPF7P0C2Y1 421 aaPredicted RBP19.18■□□□□ 0.66
CUX1-213ENST00000549414 BRMS1Q9HCU9 246 aa19.18■□□□□ 0.66
CUX1-213ENST00000549414 CFAP45Q9UL16 551 aa19.18■□□□□ 0.66
CUX1-213ENST00000549414 MLH3Q9UHC1 1453 aa19.18■□□□□ 0.66
CUX1-213ENST00000549414 MINDY4BA8MYZ0 360 aa19.18■□□□□ 0.66
CUX1-213ENST00000549414 CHMLP26374 656 aa19.18■□□□□ 0.66
CUX1-213ENST00000549414 SYNMO15061 1565 aa19.17■□□□□ 0.66
CUX1-213ENST00000549414 RBM10P98175 930 aaKnown RBP19.17■□□□□ 0.66
CUX1-213ENST00000549414 KCNQ3O43525 872 aa19.17■□□□□ 0.66
CUX1-213ENST00000549414 IKQ13123 557 aaPredicted RBP19.17■□□□□ 0.66
CUX1-213ENST00000549414 MAP3K11Q16584 847 aa19.17■□□□□ 0.66
CUX1-213ENST00000549414 UBAC1Q9BSL1 405 aa19.17■□□□□ 0.66
CUX1-213ENST00000549414 FILIP1Q7Z7B0 1213 aa19.16■□□□□ 0.66
CUX1-213ENST00000549414 PLXNC1O60486 1568 aa19.16■□□□□ 0.66
CUX1-213ENST00000549414 XRCC6P12956 609 aaKnown RBP eCLIP19.16■□□□□ 0.66
CUX1-213ENST00000549414 KLHL40Q2TBA0 621 aa19.16■□□□□ 0.66
CUX1-213ENST00000549414 IL17REQ8NFR9 667 aa19.16■□□□□ 0.66
CUX1-213ENST00000549414 BICC1Q9H694 974 aaKnown RBP19.16■□□□□ 0.66
CUX1-213ENST00000549414 BRF1Q92994 677 aa19.15■□□□□ 0.66
CUX1-213ENST00000549414 ANKRD18BA2A2Z9 1011 aa19.15■□□□□ 0.66
CUX1-213ENST00000549414 ANKRD20A12PQ8NF67 263 aa19.15■□□□□ 0.66
CUX1-213ENST00000549414 USP25Q9UHP3 1055 aa19.15■□□□□ 0.66
CUX1-213ENST00000549414 ADCY10Q96PN6 1610 aa19.15■□□□□ 0.66
CUX1-213ENST00000549414 ATP2B2Q01814 1243 aa19.15■□□□□ 0.66
CUX1-213ENST00000549414 NMIQ13287 307 aaPredicted RBP19.15■□□□□ 0.66
CUX1-213ENST00000549414 NAPBQ9H115 298 aa19.15■□□□□ 0.66
CUX1-213ENST00000549414 PRR36Q9H6K5 1346 aa19.14■□□□□ 0.66
CUX1-213ENST00000549414 BRPF1P55201 1214 aaPredicted RBP19.14■□□□□ 0.66
CUX1-213ENST00000549414 JMYQ8N9B5 988 aa19.14■□□□□ 0.66
CUX1-213ENST00000549414 NEK1Q96PY6 1258 aa19.14■□□□□ 0.66
CUX1-213ENST00000549414 VSIG10Q8N0Z9 540 aa19.14■□□□□ 0.65
CUX1-213ENST00000549414 ZNF213O14771 459 aa19.14■□□□□ 0.65
CUX1-213ENST00000549414 CCDC183Q5T5S1 534 aa19.13■□□□□ 0.65
CUX1-213ENST00000549414 CCDC144CPQ8IYA2 1237 aa19.13■□□□□ 0.65
CUX1-213ENST00000549414 DDX21Q9NR30 783 aaKnown RBP eCLIP19.13■□□□□ 0.65
CUX1-213ENST00000549414 CLTCL1P53675 1640 aa19.13■□□□□ 0.65
CUX1-213ENST00000549414 GOLGA8BA8MQT2 603 aa19.12■□□□□ 0.65
CUX1-213ENST00000549414 RBM25P49756 843 aaKnown RBP19.12■□□□□ 0.65
CUX1-213ENST00000549414 ZSCAN30Q86W11 494 aa19.12■□□□□ 0.65
CUX1-213ENST00000549414 ACSBG1Q96GR2 724 aa19.12■□□□□ 0.65
CUX1-213ENST00000549414 SCAND2PQ9GZW5 306 aaPredicted RBP19.12■□□□□ 0.65
CUX1-213ENST00000549414 IQGAP3Q86VI3 1631 aa19.12■□□□□ 0.65
CUX1-213ENST00000549414 ZNF790Q6PG37 636 aa19.12■□□□□ 0.65
CUX1-213ENST00000549414 CCDC47Q96A33 483 aaKnown RBP19.12■□□□□ 0.65
CUX1-213ENST00000549414 TCEAL9Q9UHQ7 104 aa19.12■□□□□ 0.65
CUX1-213ENST00000549414 CNPY2Q9Y2B0 182 aa19.12■□□□□ 0.65
CUX1-213ENST00000549414 SLC3A2P08195 630 aaKnown RBP19.12■□□□□ 0.65
CUX1-213ENST00000549414 ZSCAN23Q3MJ62 389 aa19.12■□□□□ 0.65
CUX1-213ENST00000549414 IQSEC3Q9UPP2 1182 aaPredicted RBP19.12■□□□□ 0.65
CUX1-213ENST00000549414 ABCC4O15439 1325 aa19.12■□□□□ 0.65
CUX1-213ENST00000549414 ROBO2Q9HCK4 1378 aa19.12■□□□□ 0.65
CUX1-213ENST00000549414 TRPM1Q7Z4N2 1603 aa19.12■□□□□ 0.65
CUX1-213ENST00000549414 RAB3GAP1Q15042 981 aa19.12■□□□□ 0.65
CUX1-213ENST00000549414 TTLL5Q6EMB2 1281 aa19.12■□□□□ 0.65
CUX1-213ENST00000549414 C8orf76Q96K31 380 aa19.12■□□□□ 0.65
CUX1-213ENST00000549414 ZNF219Q9P2Y4 722 aaPredicted RBP19.12■□□□□ 0.65
CUX1-213ENST00000549414 HSP90AB3PQ58FF7 597 aa19.11■□□□□ 0.65
CUX1-213ENST00000549414 KIF1BO60333 1816 aa19.11■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms