RNA–Protein interactions for RNA: ENST00000549354.6

LINC00661-204, long intergenic non-protein coding RNA 661, humanhuman

TSL 1 (best) BASIC

Gene LINC00661, Length 3,340 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00661-204ENST00000549354 PCDH11XQ9BZA7 1347 aa13.49□□□□□ -0.25
LINC00661-204ENST00000549354 PCDH11YQ9BZA8 1340 aa13.49□□□□□ -0.25
LINC00661-204ENST00000549354 R3HCC1Q9Y3T6 440 aaKnown RBP13.49□□□□□ -0.25
LINC00661-204ENST00000549354 PAPPAQ13219 1627 aa13.49□□□□□ -0.25
LINC00661-204ENST00000549354 ADCY9O60503 1353 aa13.49□□□□□ -0.25
LINC00661-204ENST00000549354 SYCE3A1L190 88 aa13.49□□□□□ -0.25
LINC00661-204ENST00000549354 OS9Q13438 667 aaPredicted RBP13.49□□□□□ -0.25
LINC00661-204ENST00000549354 NFATC2IPQ8NCF5 419 aa13.49□□□□□ -0.25
LINC00661-204ENST00000549354 USP44Q9H0E7 712 aa13.49□□□□□ -0.25
LINC00661-204ENST00000549354 PDIA6Q15084 440 aa13.49□□□□□ -0.25
LINC00661-204ENST00000549354 BEND3Q5T5X7 828 aa13.49□□□□□ -0.25
LINC00661-204ENST00000549354 TOM1L2Q6ZVM7 507 aa13.49□□□□□ -0.25
LINC00661-204ENST00000549354 JARID2Q92833 1246 aaPredicted RBP13.49□□□□□ -0.25
LINC00661-204ENST00000549354 HYPKQ9NX55 129 aa13.49□□□□□ -0.25
LINC00661-204ENST00000549354 NSFL1CQ9UNZ2 370 aaKnown RBP13.49□□□□□ -0.25
LINC00661-204ENST00000549354 GLIPR1L2Q4G1C9 344 aa13.48□□□□□ -0.25
LINC00661-204ENST00000549354 ZCRB1Q8TBF4 217 aaKnown RBP13.48□□□□□ -0.25
LINC00661-204ENST00000549354 RBSNQ9H1K0 784 aa13.48□□□□□ -0.25
LINC00661-204ENST00000549354 FAM13BQ9NYF5 915 aa13.48□□□□□ -0.25
LINC00661-204ENST00000549354 COL16A1Q07092 1604 aaPredicted RBP13.48□□□□□ -0.25
LINC00661-204ENST00000549354 UBR2Q8IWV8 1755 aa13.48□□□□□ -0.25
LINC00661-204ENST00000549354 HMMRO75330 724 aa13.48□□□□□ -0.25
LINC00661-204ENST00000549354 PTMAP06454 111 aaKnown RBP13.48□□□□□ -0.25
LINC00661-204ENST00000549354 ZSCAN23Q3MJ62 389 aa13.48□□□□□ -0.25
LINC00661-204ENST00000549354 ZMYND15Q9H091 742 aa13.48□□□□□ -0.25
LINC00661-204ENST00000549354 DDX21Q9NR30 783 aaKnown RBP eCLIP13.48□□□□□ -0.25
LINC00661-204ENST00000549354 IL2RBP14784 551 aa13.47□□□□□ -0.25
LINC00661-204ENST00000549354 ATP8B2P98198 1209 aa13.47□□□□□ -0.25
LINC00661-204ENST00000549354 TTC22Q5TAA0 569 aa13.47□□□□□ -0.25
LINC00661-204ENST00000549354 DNAAF4Q8WXU2 420 aa13.47□□□□□ -0.25
LINC00661-204ENST00000549354 ERVV-2B6SEH9 535 aa13.47□□□□□ -0.25
LINC00661-204ENST00000549354 USP26Q9BXU7 913 aa13.47□□□□□ -0.25
LINC00661-204ENST00000549354 ZNF830Q96NB3 372 aaPredicted RBP13.47□□□□□ -0.25
LINC00661-204ENST00000549354 PLCH1Q4KWH8 1693 aa13.46□□□□□ -0.25
LINC00661-204ENST00000549354 LAMB4A4D0S4 1761 aa13.46□□□□□ -0.25
LINC00661-204ENST00000549354 KLHL40Q2TBA0 621 aa13.46□□□□□ -0.25
LINC00661-204ENST00000549354 LARP1Q6PKG0 1096 aaKnown RBP13.46□□□□□ -0.25
LINC00661-204ENST00000549354 SRCIN1Q9C0H9 1055 aa13.46□□□□□ -0.25
LINC00661-204ENST00000549354 SRCAPQ6ZRS2 3230 aa13.46□□□□□ -0.25
LINC00661-204ENST00000549354 DISP2A7MBM2 1401 aa13.46□□□□□ -0.25
LINC00661-204ENST00000549354 PRAMEF22A3QJZ6 481 aa13.46□□□□□ -0.25
LINC00661-204ENST00000549354 PNMA6EA0A0J9YXQ4 647 aa13.46□□□□□ -0.26
LINC00661-204ENST00000549354 PI4KAP2A4QPH2 592 aa13.46□□□□□ -0.26
LINC00661-204ENST00000549354 FAM177BA6PVY3 158 aa13.46□□□□□ -0.26
LINC00661-204ENST00000549354 PIP4K2AP48426 406 aaPredicted RBP13.46□□□□□ -0.26
LINC00661-204ENST00000549354 FOSBP53539 338 aa13.46□□□□□ -0.26
LINC00661-204ENST00000549354 AIMP1Q12904 312 aaKnown RBP13.46□□□□□ -0.26
LINC00661-204ENST00000549354 RABEP1Q15276 862 aa13.46□□□□□ -0.26
LINC00661-204ENST00000549354 CASC1Q6TDU7 716 aa13.46□□□□□ -0.26
LINC00661-204ENST00000549354 KSR2Q6VAB6 950 aa13.46□□□□□ -0.26
LINC00661-204ENST00000549354 PI4KAP1Q8N8J0 262 aa13.46□□□□□ -0.26
LINC00661-204ENST00000549354 PALD1Q9ULE6 856 aa13.46□□□□□ -0.26
LINC00661-204ENST00000549354 ALDH1L1O75891 902 aa13.45□□□□□ -0.26
LINC00661-204ENST00000549354 PROSER3Q2NL68 480 aa13.45□□□□□ -0.26
LINC00661-204ENST00000549354 DNTTIP2Q5QJE6 756 aaKnown RBP13.45□□□□□ -0.26
LINC00661-204ENST00000549354 LRP10Q7Z4F1 713 aa13.45□□□□□ -0.26
LINC00661-204ENST00000549354 TCEANC2Q96MN5 208 aa13.45□□□□□ -0.26
LINC00661-204ENST00000549354 LMBRD1Q9NUN5 540 aa13.45□□□□□ -0.26
LINC00661-204ENST00000549354 CCDC173Q0VFZ6 552 aa13.45□□□□□ -0.26
LINC00661-204ENST00000549354 SLC39A6Q13433 755 aa13.45□□□□□ -0.26
LINC00661-204ENST00000549354 UNC5CLQ8IV45 518 aa13.45□□□□□ -0.26
LINC00661-204ENST00000549354 ZNF496Q96IT1 587 aaPredicted RBP13.45□□□□□ -0.26
LINC00661-204ENST00000549354 SNRPA1P09661 255 aaKnown RBP13.44□□□□□ -0.26
LINC00661-204ENST00000549354 GPT2Q8TD30 523 aa13.44□□□□□ -0.26
LINC00661-204ENST00000549354 LRRFIP2Q9Y608 721 aaKnown RBP13.44□□□□□ -0.26
LINC00661-204ENST00000549354 TNS2Q63HR2 1409 aa13.44□□□□□ -0.26
LINC00661-204ENST00000549354 ST18O60284 1047 aa13.44□□□□□ -0.26
LINC00661-204ENST00000549354 CABP4P57796 275 aa13.44□□□□□ -0.26
LINC00661-204ENST00000549354 ZSCAN30Q86W11 494 aa13.44□□□□□ -0.26
LINC00661-204ENST00000549354 SURF6O75683 361 aaKnown RBP13.44□□□□□ -0.26
LINC00661-204ENST00000549354 FMNL2Q96PY5 1086 aa13.44□□□□□ -0.26
LINC00661-204ENST00000549354 UTYO14607 1347 aa13.43□□□□□ -0.26
LINC00661-204ENST00000549354 KCPQ6ZWJ8 1503 aa13.43□□□□□ -0.26
LINC00661-204ENST00000549354 EVA1CP58658 441 aa13.43□□□□□ -0.26
LINC00661-204ENST00000549354 POLA2Q14181 598 aa13.43□□□□□ -0.26
LINC00661-204ENST00000549354 SSH3Q8TE77 659 aa13.43□□□□□ -0.26
LINC00661-204ENST00000549354 UBTFL1P0CB47 393 aaPredicted RBP13.43□□□□□ -0.26
LINC00661-204ENST00000549354 TOGARAM1Q9Y4F4 1720 aa13.43□□□□□ -0.26
LINC00661-204ENST00000549354 NUCB2P80303 420 aa13.42□□□□□ -0.26
LINC00661-204ENST00000549354 TMEM63CQ9P1W3 806 aa13.42□□□□□ -0.26
LINC00661-204ENST00000549354 ZDHHC9Q9Y397 364 aa13.42□□□□□ -0.26
LINC00661-204ENST00000549354 OSBPL3Q9H4L5 887 aa13.42□□□□□ -0.26
LINC00661-204ENST00000549354 GOLGB1Q14789 3259 aaKnown RBP13.42□□□□□ -0.26
LINC00661-204ENST00000549354 WNK3Q9BYP7 1800 aa13.42□□□□□ -0.26
LINC00661-204ENST00000549354 MTX1Q13505 466 aa13.42□□□□□ -0.26
LINC00661-204ENST00000549354 CWC27Q6UX04 472 aaKnown RBP13.42□□□□□ -0.26
LINC00661-204ENST00000549354 TSC1Q92574 1164 aa13.42□□□□□ -0.26
LINC00661-204ENST00000549354 SIL1Q9H173 461 aa13.42□□□□□ -0.26
LINC00661-204ENST00000549354 LRP6O75581 1613 aa13.42□□□□□ -0.26
LINC00661-204ENST00000549354 PHLPP1O60346 1717 aa13.41□□□□□ -0.26
LINC00661-204ENST00000549354 RRP9O43818 475 aaKnown RBP13.41□□□□□ -0.26
LINC00661-204ENST00000549354 TTC5Q8N0Z6 440 aa13.41□□□□□ -0.26
LINC00661-204ENST00000549354 C17orf53Q8N3J3 647 aaPredicted RBP13.41□□□□□ -0.26
LINC00661-204ENST00000549354 MAP3K2Q9Y2U5 619 aa13.41□□□□□ -0.26
LINC00661-204ENST00000549354 DDX58O95786 925 aaKnown RBP13.41□□□□□ -0.26
LINC00661-204ENST00000549354 PKNOX2Q96KN3 472 aa13.41□□□□□ -0.26
LINC00661-204ENST00000549354 STRN4Q9NRL3 753 aa13.41□□□□□ -0.26
LINC00661-204ENST00000549354 BTG4Q9NY30 223 aa13.41□□□□□ -0.26
LINC00661-204ENST00000549354 ISY1Q9ULR0 285 aaKnown RBP13.41□□□□□ -0.26
LINC00661-204ENST00000549354 SALL3Q9BXA9 1300 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 82.5 ms