RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 FLAD1Q8NFF5 587 aa9.32□□□□□ -0.92
LIMA1-204ENST00000549064 ZCRB1Q8TBF4 217 aaKnown RBP9.32□□□□□ -0.92
LIMA1-204ENST00000549064 SLC39A7Q92504 469 aa9.32□□□□□ -0.92
LIMA1-204ENST00000549064 DCBLD2Q96PD2 775 aa9.32□□□□□ -0.92
LIMA1-204ENST00000549064 BCS1LQ9Y276 419 aa9.32□□□□□ -0.92
LIMA1-204ENST00000549064 PCDHGA4Q9Y5G9 962 aa9.32□□□□□ -0.92
LIMA1-204ENST00000549064 ITGB4P16144 1822 aa9.32□□□□□ -0.92
LIMA1-204ENST00000549064 PALLDQ8WX93 1383 aa9.32□□□□□ -0.92
LIMA1-204ENST00000549064 MYSM1Q5VVJ2 828 aa9.31□□□□□ -0.92
LIMA1-204ENST00000549064 ARHGAP27Q6ZUM4 889 aa9.31□□□□□ -0.92
LIMA1-204ENST00000549064 C16orf71Q8IYS4 520 aaPredicted RBP9.31□□□□□ -0.92
LIMA1-204ENST00000549064 SBNO2Q9Y2G9 1366 aa9.31□□□□□ -0.92
LIMA1-204ENST00000549064 CD163L1Q9NR16 1453 aa9.31□□□□□ -0.92
LIMA1-204ENST00000549064 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.3□□□□□ -0.92
LIMA1-204ENST00000549064 OATP04181 439 aa9.3□□□□□ -0.92
LIMA1-204ENST00000549064 FSTL1Q12841 308 aa9.3□□□□□ -0.92
LIMA1-204ENST00000549064 PXYLP1Q8TE99 480 aa9.3□□□□□ -0.92
LIMA1-204ENST00000549064 IP6K1Q92551 441 aa9.3□□□□□ -0.92
LIMA1-204ENST00000549064 TNRC6CQ9HCJ0 1690 aaKnown RBP9.29□□□□□ -0.92
LIMA1-204ENST00000549064 MAP2P11137 1827 aaKnown RBP9.29□□□□□ -0.92
LIMA1-204ENST00000549064 ARFGEF1Q9Y6D6 1849 aa9.29□□□□□ -0.92
LIMA1-204ENST00000549064 A0A0G2JLW4 131 aa9.29□□□□□ -0.92
LIMA1-204ENST00000549064 RAD21O60216 631 aa9.29□□□□□ -0.92
LIMA1-204ENST00000549064 PDIA4P13667 645 aaKnown RBP9.29□□□□□ -0.92
LIMA1-204ENST00000549064 C9orf131Q5VYM1 1079 aa9.29□□□□□ -0.92
LIMA1-204ENST00000549064 FBXW7Q969H0 707 aa9.29□□□□□ -0.92
LIMA1-204ENST00000549064 ADGRG1Q9Y653 693 aa9.29□□□□□ -0.92
LIMA1-204ENST00000549064 SBF1O95248 1867 aa9.28□□□□□ -0.92
LIMA1-204ENST00000549064 FBLN1P23142 703 aa9.28□□□□□ -0.92
LIMA1-204ENST00000549064 MPRIPQ6WCQ1 1025 aa9.28□□□□□ -0.92
LIMA1-204ENST00000549064 USHBP1Q8N6Y0 703 aa9.28□□□□□ -0.92
LIMA1-204ENST00000549064 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.28□□□□□ -0.92
LIMA1-204ENST00000549064 RRAGCQ9HB90 399 aa9.28□□□□□ -0.92
LIMA1-204ENST00000549064 MMP10P09238 476 aa9.27□□□□□ -0.93
LIMA1-204ENST00000549064 C7P10643 843 aa9.27□□□□□ -0.93
LIMA1-204ENST00000549064 DPEP1P16444 411 aa9.27□□□□□ -0.93
LIMA1-204ENST00000549064 CLK2P49760 499 aaKnown RBP9.27□□□□□ -0.93
LIMA1-204ENST00000549064 C6orf132Q5T0Z8 1188 aa9.27□□□□□ -0.93
LIMA1-204ENST00000549064 METRNQ9UJH8 293 aa9.27□□□□□ -0.93
LIMA1-204ENST00000549064 PLEKHG2Q9H7P9 1386 aa9.26□□□□□ -0.93
LIMA1-204ENST00000549064 C10orf71Q711Q0 1435 aa9.26□□□□□ -0.93
LIMA1-204ENST00000549064 HOXC9P31274 260 aa9.26□□□□□ -0.93
LIMA1-204ENST00000549064 FOSBP53539 338 aa9.26□□□□□ -0.93
LIMA1-204ENST00000549064 LINC00116Q8NCU8 138 aa9.26□□□□□ -0.93
LIMA1-204ENST00000549064 TBC1D2Q9BYX2 928 aa9.26□□□□□ -0.93
LIMA1-204ENST00000549064 MAP3K19Q56UN5 1328 aa9.26□□□□□ -0.93
LIMA1-204ENST00000549064 C4AP0C0L4 1744 aa9.25□□□□□ -0.93
LIMA1-204ENST00000549064 EDC4Q6P2E9 1401 aaKnown RBP9.25□□□□□ -0.93
LIMA1-204ENST00000549064 NSD3Q9BZ95 1437 aa9.25□□□□□ -0.93
LIMA1-204ENST00000549064 SSFA2P28290 1259 aa9.25□□□□□ -0.93
LIMA1-204ENST00000549064 NBPF6Q5VWK0 638 aa9.25□□□□□ -0.93
LIMA1-204ENST00000549064 SMC1BQ8NDV3 1235 aa9.25□□□□□ -0.93
LIMA1-204ENST00000549064 TMC1Q8TDI8 760 aa9.25□□□□□ -0.93
LIMA1-204ENST00000549064 NBPF4Q96M43 638 aa9.25□□□□□ -0.93
LIMA1-204ENST00000549064 SNRKQ9NRH2 765 aa9.25□□□□□ -0.93
LIMA1-204ENST00000549064 KDM2BQ8NHM5 1336 aa9.25□□□□□ -0.93
LIMA1-204ENST00000549064 SPDYE5A6NIY4 337 aa9.24□□□□□ -0.93
LIMA1-204ENST00000549064 TGFB2P61812 414 aa9.24□□□□□ -0.93
LIMA1-204ENST00000549064 ZNF454Q8N9F8 522 aa9.24□□□□□ -0.93
LIMA1-204ENST00000549064 SLC12A5Q9H2X9 1139 aa9.24□□□□□ -0.93
LIMA1-204ENST00000549064 RNF181Q9P0P0 153 aa9.24□□□□□ -0.93
LIMA1-204ENST00000549064 COG6Q9Y2V7 657 aa9.24□□□□□ -0.93
LIMA1-204ENST00000549064 A0A1W2PP64 1363 aa9.24□□□□□ -0.93
LIMA1-204ENST00000549064 KCNA3P22001 575 aa9.23□□□□□ -0.93
LIMA1-204ENST00000549064 RFC5P40937 340 aa9.23□□□□□ -0.93
LIMA1-204ENST00000549064 AMPHP49418 695 aa9.23□□□□□ -0.93
LIMA1-204ENST00000549064 ITPK1Q13572 414 aa9.23□□□□□ -0.93
LIMA1-204ENST00000549064 HDGFL2Q7Z4V5 671 aaPredicted RBP9.23□□□□□ -0.93
LIMA1-204ENST00000549064 TTC13Q8NBP0 860 aa9.23□□□□□ -0.93
LIMA1-204ENST00000549064 ZDHHC16Q969W1 377 aa9.23□□□□□ -0.93
LIMA1-204ENST00000549064 CCDC97Q96F63 343 aaPredicted RBP9.23□□□□□ -0.93
LIMA1-204ENST00000549064 PCDH11XQ9BZA7 1347 aa9.23□□□□□ -0.93
LIMA1-204ENST00000549064 PCDH11YQ9BZA8 1340 aa9.23□□□□□ -0.93
LIMA1-204ENST00000549064 CCDC88AQ3V6T2 1871 aa9.23□□□□□ -0.93
LIMA1-204ENST00000549064 LOC102724428A0A0B4J2F2 783 aa9.22□□□□□ -0.93
LIMA1-204ENST00000549064 CYP27B1O15528 508 aa9.22□□□□□ -0.93
LIMA1-204ENST00000549064 HMGB2P26583 209 aaKnown RBP9.22□□□□□ -0.93
LIMA1-204ENST00000549064 SIK1P57059 783 aa9.22□□□□□ -0.93
LIMA1-204ENST00000549064 RAPGEF4Q8WZA2 1011 aa9.22□□□□□ -0.93
LIMA1-204ENST00000549064 PIGBQ92521 554 aa9.22□□□□□ -0.93
LIMA1-204ENST00000549064 NECTIN2Q92692 538 aa9.22□□□□□ -0.93
LIMA1-204ENST00000549064 SMARCC1Q92922 1105 aaPredicted RBP9.22□□□□□ -0.93
LIMA1-204ENST00000549064 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.22□□□□□ -0.93
LIMA1-204ENST00000549064 LIMD1Q9UGP4 676 aa9.22□□□□□ -0.93
LIMA1-204ENST00000549064 TATP17735 454 aaPredicted RBP9.21□□□□□ -0.94
LIMA1-204ENST00000549064 RRS1Q15050 365 aaKnown RBP9.21□□□□□ -0.94
LIMA1-204ENST00000549064 DCAF5Q96JK2 942 aa9.21□□□□□ -0.94
LIMA1-204ENST00000549064 ADAM33Q9BZ11 813 aa9.21□□□□□ -0.94
LIMA1-204ENST00000549064 CCDC87Q9NVE4 849 aa9.21□□□□□ -0.94
LIMA1-204ENST00000549064 TIAM2Q8IVF5 1701 aa9.21□□□□□ -0.94
LIMA1-204ENST00000549064 CGNL1Q0VF96 1302 aa9.21□□□□□ -0.94
LIMA1-204ENST00000549064 ROCK2O75116 1388 aaKnown RBP9.21□□□□□ -0.94
LIMA1-204ENST00000549064 FOXN1O15353 648 aa9.2□□□□□ -0.94
LIMA1-204ENST00000549064 PRSS12P56730 875 aa9.2□□□□□ -0.94
LIMA1-204ENST00000549064 L3MBTL2Q969R5 705 aa9.2□□□□□ -0.94
LIMA1-204ENST00000549064 RBM27Q9P2N5 1060 aaKnown RBP9.2□□□□□ -0.94
LIMA1-204ENST00000549064 SERPINA10Q9UK55 444 aa9.2□□□□□ -0.94
LIMA1-204ENST00000549064 ATP6V1AP38606 617 aa9.19□□□□□ -0.94
LIMA1-204ENST00000549064 TMF1P82094 1093 aa9.19□□□□□ -0.94
LIMA1-204ENST00000549064 RASSF7Q02833 373 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms