RNA–Protein interactions for RNA: ENST00000547939.5

TUBA1A-204, Transcript of tubulin alpha 1a, human

TSL 3

Gene TUBA1A, Length 946 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TUBA1A-204	ENST00000547939	MKRN1	Q9UHC7	482 aa	Known RBP	13.79	□□□□□ -0.2
TUBA1A-204	ENST00000547939	NPHP1	O15259	732 aa		13.78	□□□□□ -0.2
TUBA1A-204	ENST00000547939	RGS19	P49795	217 aa		13.78	□□□□□ -0.2
TUBA1A-204	ENST00000547939	DZIP3	Q86Y13	1208 aa	Known RBP	13.78	□□□□□ -0.2
TUBA1A-204	ENST00000547939	SETDB2	Q96T68	719 aa		13.78	□□□□□ -0.2
TUBA1A-204	ENST00000547939	ZNF652	Q9Y2D9	606 aa		13.77	□□□□□ -0.21
TUBA1A-204	ENST00000547939	FER1L6	Q2WGJ9	1857 aa		13.76	□□□□□ -0.21
TUBA1A-204	ENST00000547939	PRAMEF22	A3QJZ6	481 aa		13.76	□□□□□ -0.21
TUBA1A-204	ENST00000547939	CHRNA5	P30532	468 aa		13.76	□□□□□ -0.21
TUBA1A-204	ENST00000547939	RASSF7	Q02833	373 aa		13.76	□□□□□ -0.21
TUBA1A-204	ENST00000547939	TBC1D9B	Q66K14	1250 aa		13.76	□□□□□ -0.21
TUBA1A-204	ENST00000547939	CLEC4G	Q6UXB4	293 aa		13.76	□□□□□ -0.21
TUBA1A-204	ENST00000547939	THUMPD2	Q9BTF0	503 aa	Known RBP	13.76	□□□□□ -0.21
TUBA1A-204	ENST00000547939	PRKRIP1	Q9H875	184 aa	Predicted RBP	13.76	□□□□□ -0.21
TUBA1A-204	ENST00000547939	PDZRN3	Q9UPQ7	1066 aa		13.76	□□□□□ -0.21
TUBA1A-204	ENST00000547939	CNTNAP1	P78357	1384 aa		13.75	□□□□□ -0.21
TUBA1A-204	ENST00000547939		H0YIN7	160 aa		13.75	□□□□□ -0.21
TUBA1A-204	ENST00000547939	CAMTA2	O94983	1202 aa		13.75	□□□□□ -0.21
TUBA1A-204	ENST00000547939	TMPO	P42166	694 aa	Known RBP	13.75	□□□□□ -0.21
TUBA1A-204	ENST00000547939	PIP4K2A	P48426	406 aa	Predicted RBP	13.75	□□□□□ -0.21
TUBA1A-204	ENST00000547939	RUNDC1	Q96C34	613 aa		13.75	□□□□□ -0.21
TUBA1A-204	ENST00000547939	CREBZF	Q9NS37	354 aa		13.75	□□□□□ -0.21
TUBA1A-204	ENST00000547939	TSPYL4	Q9UJ04	414 aa		13.75	□□□□□ -0.21
TUBA1A-204	ENST00000547939	CASP8AP2	Q9UKL3	1982 aa		13.74	□□□□□ -0.21
TUBA1A-204	ENST00000547939	CARMIL3	Q8ND23	1372 aa		13.74	□□□□□ -0.21
TUBA1A-204	ENST00000547939	UBR2	Q8IWV8	1755 aa		13.74	□□□□□ -0.21
TUBA1A-204	ENST00000547939	GLTPD2	A6NH11	291 aa		13.74	□□□□□ -0.21
TUBA1A-204	ENST00000547939	VEGFA	P15692	232 aa	Predicted RBP	13.74	□□□□□ -0.21
TUBA1A-204	ENST00000547939	PDE6B	P35913	854 aa		13.74	□□□□□ -0.21
TUBA1A-204	ENST00000547939	LBX1	P52954	281 aa		13.74	□□□□□ -0.21
TUBA1A-204	ENST00000547939	EIF4A1	P60842	406 aa	Known RBP	13.74	□□□□□ -0.21
TUBA1A-204	ENST00000547939	NEUROD2	Q15784	382 aa		13.74	□□□□□ -0.21
TUBA1A-204	ENST00000547939	C2CD5	Q86YS7	1000 aa		13.74	□□□□□ -0.21
TUBA1A-204	ENST00000547939	BABAM1	Q9NWV8	329 aa		13.74	□□□□□ -0.21
TUBA1A-204	ENST00000547939	NRXN2	Q9P2S2	1712 aa		13.73	□□□□□ -0.21
TUBA1A-204	ENST00000547939	ZC3H4	Q9UPT8	1303 aa	Known RBP	13.73	□□□□□ -0.21
TUBA1A-204	ENST00000547939	RGL2	O15211	777 aa		13.73	□□□□□ -0.21
TUBA1A-204	ENST00000547939	CTCF	P49711	727 aa	Predicted RBP	13.73	□□□□□ -0.21
TUBA1A-204	ENST00000547939	ST5	P78524	1137 aa		13.73	□□□□□ -0.21
TUBA1A-204	ENST00000547939	MLLT1	Q03111	559 aa	Predicted RBP	13.73	□□□□□ -0.21
TUBA1A-204	ENST00000547939	CCDC146	Q8IYE0	955 aa		13.73	□□□□□ -0.21
TUBA1A-204	ENST00000547939	TTLL6	Q8N841	843 aa		13.73	□□□□□ -0.21
TUBA1A-204	ENST00000547939	CNBD1	Q8NA66	436 aa		13.73	□□□□□ -0.21
TUBA1A-204	ENST00000547939	BRIP1	Q9BX63	1249 aa		13.73	□□□□□ -0.21
TUBA1A-204	ENST00000547939	THSD7B	Q9C0I4	1608 aa		13.72	□□□□□ -0.21
TUBA1A-204	ENST00000547939	NBPF26	B4DH59	902 aa		13.72	□□□□□ -0.21
TUBA1A-204	ENST00000547939	NBPF10	Q6P3W6	841 aa	Known RBP	13.72	□□□□□ -0.21
TUBA1A-204	ENST00000547939	NBPF15	Q8N660	670 aa		13.72	□□□□□ -0.21
TUBA1A-204	ENST00000547939	WBP1L	Q9NX94	342 aa		13.72	□□□□□ -0.21
TUBA1A-204	ENST00000547939	ADAMTS8	Q9UP79	889 aa		13.72	□□□□□ -0.21
TUBA1A-204	ENST00000547939	RRP7A	Q9Y3A4	280 aa	Known RBP	13.72	□□□□□ -0.21
TUBA1A-204	ENST00000547939	POTEI	P0CG38	1075 aa		13.71	□□□□□ -0.21
TUBA1A-204	ENST00000547939	POTEJ	P0CG39	1038 aa		13.71	□□□□□ -0.21
TUBA1A-204	ENST00000547939	HSPA8	P11142	646 aa	Known RBP	13.71	□□□□□ -0.21
TUBA1A-204	ENST00000547939	PRR5L	Q6MZQ0	368 aa		13.71	□□□□□ -0.21
TUBA1A-204	ENST00000547939	KIF6	Q6ZMV9	814 aa		13.71	□□□□□ -0.21
TUBA1A-204	ENST00000547939	NBPF5P	Q86XG9	351 aa	Predicted RBP	13.71	□□□□□ -0.21
TUBA1A-204	ENST00000547939	NGEF	Q8N5V2	710 aa		13.71	□□□□□ -0.21
TUBA1A-204	ENST00000547939	ZNF622	Q969S3	477 aa	Known RBP eCLIP	13.71	□□□□□ -0.21
TUBA1A-204	ENST00000547939	SIPA1L3	O60292	1781 aa	Predicted RBP	13.71	□□□□□ -0.22
TUBA1A-204	ENST00000547939	TPTE2	Q6XPS3	522 aa		13.7	□□□□□ -0.22
TUBA1A-204	ENST00000547939	NIP7	Q9Y221	180 aa	Known RBP eCLIP	13.7	□□□□□ -0.22
TUBA1A-204	ENST00000547939	ADAMTSL1	Q8N6G6	1762 aa		13.7	□□□□□ -0.22
TUBA1A-204	ENST00000547939	CACNA1S	Q13698	1873 aa		13.7	□□□□□ -0.22
TUBA1A-204	ENST00000547939	ANKRD31	Q8N7Z5	1873 aa		13.7	□□□□□ -0.22
TUBA1A-204	ENST00000547939	ERBB4	Q15303	1308 aa		13.69	□□□□□ -0.22
TUBA1A-204	ENST00000547939	ERVV-1	B6SEH8	477 aa		13.69	□□□□□ -0.22
TUBA1A-204	ENST00000547939	MYL6B	P14649	208 aa		13.69	□□□□□ -0.22
TUBA1A-204	ENST00000547939	GTF2E1	P29083	439 aa	Predicted RBP	13.69	□□□□□ -0.22
TUBA1A-204	ENST00000547939	VEGFB	P49765	207 aa		13.69	□□□□□ -0.22
TUBA1A-204	ENST00000547939	LAS1L	Q9Y4W2	734 aa	Known RBP	13.69	□□□□□ -0.22
TUBA1A-204	ENST00000547939	SCN4A	P35499	1836 aa		13.69	□□□□□ -0.22
TUBA1A-204	ENST00000547939	PASK	Q96RG2	1323 aa		13.68	□□□□□ -0.22
TUBA1A-204	ENST00000547939	EIF2S2	P20042	333 aa	Known RBP	13.68	□□□□□ -0.22
TUBA1A-204	ENST00000547939	CCDC24	Q8N4L8	307 aa		13.68	□□□□□ -0.22
TUBA1A-204	ENST00000547939	ZNF316	A6NFI3	1004 aa	Predicted RBP	13.67	□□□□□ -0.22
TUBA1A-204	ENST00000547939	CNKSR1	Q969H4	720 aa		13.67	□□□□□ -0.22
TUBA1A-204	ENST00000547939	LTBP1	Q14766	1721 aa		13.67	□□□□□ -0.22
TUBA1A-204	ENST00000547939	MAP3K15	Q6ZN16	1313 aa		13.66	□□□□□ -0.22
TUBA1A-204	ENST00000547939	FAM177B	A6PVY3	158 aa		13.66	□□□□□ -0.22
TUBA1A-204	ENST00000547939	CHL1	O00533	1208 aa		13.66	□□□□□ -0.22
TUBA1A-204	ENST00000547939	LMNB1	P20700	586 aa		13.66	□□□□□ -0.22
TUBA1A-204	ENST00000547939	CALD1	Q05682	793 aa	Known RBP	13.66	□□□□□ -0.22
TUBA1A-204	ENST00000547939	HLF	Q16534	295 aa		13.66	□□□□□ -0.22
TUBA1A-204	ENST00000547939	STYK1	Q6J9G0	422 aa		13.66	□□□□□ -0.22
TUBA1A-204	ENST00000547939	MASTL	Q96GX5	879 aa		13.66	□□□□□ -0.22
TUBA1A-204	ENST00000547939	NYX	Q9GZU5	481 aa		13.66	□□□□□ -0.22
TUBA1A-204	ENST00000547939	TRIM35	Q9UPQ4	493 aa		13.66	□□□□□ -0.22
TUBA1A-204	ENST00000547939	COL11A2	P13942	1736 aa	Predicted RBP	13.66	□□□□□ -0.22
TUBA1A-204	ENST00000547939	NFKBIE	O00221	500 aa		13.65	□□□□□ -0.22
TUBA1A-204	ENST00000547939	CCDC85C	A6NKD9	419 aa		13.64	□□□□□ -0.23
TUBA1A-204	ENST00000547939	ANP32C	O43423	234 aa		13.64	□□□□□ -0.23
TUBA1A-204	ENST00000547939	SRGN	P10124	158 aa		13.64	□□□□□ -0.23
TUBA1A-204	ENST00000547939	NPR1	P16066	1061 aa		13.64	□□□□□ -0.23
TUBA1A-204	ENST00000547939	SOGA3	Q5TF21	947 aa		13.64	□□□□□ -0.23
TUBA1A-204	ENST00000547939	CHADL	Q6NUI6	762 aa		13.64	□□□□□ -0.23
TUBA1A-204	ENST00000547939	TTLL7	Q6ZT98	887 aa		13.64	□□□□□ -0.23
TUBA1A-204	ENST00000547939	AIDA	Q96BJ3	306 aa		13.64	□□□□□ -0.23
TUBA1A-204	ENST00000547939	CFAP44	Q96MT7	982 aa		13.64	□□□□□ -0.23
TUBA1A-204	ENST00000547939	ZBTB3	Q9H5J0	574 aa		13.64	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms