RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 RGPD2P0DJD1 1756 aa11.21□□□□□ -0.62
VPS29-203ENST00000546588 COL16A1Q07092 1604 aaPredicted RBP11.2□□□□□ -0.62
VPS29-203ENST00000546588 FLT4P35916 1363 aa11.2□□□□□ -0.62
VPS29-203ENST00000546588 NPHP3Q7Z494 1330 aa11.2□□□□□ -0.62
VPS29-203ENST00000546588 NPM2Q86SE8 214 aaKnown RBP11.2□□□□□ -0.62
VPS29-203ENST00000546588 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.2□□□□□ -0.62
VPS29-203ENST00000546588 ORAI2Q96SN7 254 aa11.2□□□□□ -0.62
VPS29-203ENST00000546588 TMEM134Q9H6X4 195 aa11.2□□□□□ -0.62
VPS29-203ENST00000546588 ADGRG1Q9Y653 693 aa11.2□□□□□ -0.62
VPS29-203ENST00000546588 PLEKHG2Q9H7P9 1386 aa11.19□□□□□ -0.62
VPS29-203ENST00000546588 SOS2Q07890 1332 aaPredicted RBP11.19□□□□□ -0.62
VPS29-203ENST00000546588 ZNF521Q96K83 1311 aa11.19□□□□□ -0.62
VPS29-203ENST00000546588 ESCO1Q5FWF5 840 aa11.19□□□□□ -0.62
VPS29-203ENST00000546588 FAM9BQ8IZU0 186 aa11.19□□□□□ -0.62
VPS29-203ENST00000546588 CCDC82Q8N4S0 544 aa11.19□□□□□ -0.62
VPS29-203ENST00000546588 CFAP53Q96M91 514 aa11.19□□□□□ -0.62
VPS29-203ENST00000546588 LRRC37A3O60309 1634 aa11.19□□□□□ -0.62
VPS29-203ENST00000546588 ARHGEF10O15013 1369 aa11.18□□□□□ -0.62
VPS29-203ENST00000546588 KDRP35968 1356 aa11.18□□□□□ -0.62
VPS29-203ENST00000546588 RAD21O60216 631 aa11.18□□□□□ -0.62
VPS29-203ENST00000546588 BRINP3Q76B58 766 aa11.18□□□□□ -0.62
VPS29-203ENST00000546588 PXYLP1Q8TE99 480 aa11.18□□□□□ -0.62
VPS29-203ENST00000546588 ADAMTS8Q9UP79 889 aa11.18□□□□□ -0.62
VPS29-203ENST00000546588 PHLPP1O60346 1717 aa11.18□□□□□ -0.62
VPS29-203ENST00000546588 ADAMTS7Q9UKP4 1686 aa11.17□□□□□ -0.62
VPS29-203ENST00000546588 MYSM1Q5VVJ2 828 aa11.17□□□□□ -0.62
VPS29-203ENST00000546588 WNK3Q9BYP7 1800 aa11.16□□□□□ -0.62
VPS29-203ENST00000546588 ACTN4O43707 911 aaKnown RBP11.16□□□□□ -0.62
VPS29-203ENST00000546588 HNRNPUQ00839 825 aaKnown RBP eCLIP11.16□□□□□ -0.62
VPS29-203ENST00000546588 WDR43Q15061 677 aaKnown RBP eCLIP11.16□□□□□ -0.62
VPS29-203ENST00000546588 RBM46Q8TBY0 533 aaKnown RBP11.16□□□□□ -0.62
VPS29-203ENST00000546588 YTHDC1Q96MU7 727 aaKnown RBP11.16□□□□□ -0.62
VPS29-203ENST00000546588 CPDO75976 1380 aa11.16□□□□□ -0.62
VPS29-203ENST00000546588 PKD1L3Q7Z443 1732 aa11.15□□□□□ -0.62
VPS29-203ENST00000546588 SPATA31A3Q5VYP0 1347 aa11.15□□□□□ -0.62
VPS29-203ENST00000546588 PLCH1Q4KWH8 1693 aa11.15□□□□□ -0.62
VPS29-203ENST00000546588 TLL1O43897 1013 aa11.15□□□□□ -0.62
VPS29-203ENST00000546588 IL13P35225 146 aa11.15□□□□□ -0.62
VPS29-203ENST00000546588 SLC19A1P41440 591 aa11.15□□□□□ -0.62
VPS29-203ENST00000546588 CLK2P49760 499 aaKnown RBP11.15□□□□□ -0.62
VPS29-203ENST00000546588 PSME1Q06323 249 aa11.15□□□□□ -0.62
VPS29-203ENST00000546588 PDE3BQ13370 1112 aa11.15□□□□□ -0.62
VPS29-203ENST00000546588 ZNF787Q6DD87 383 aa11.15□□□□□ -0.62
VPS29-203ENST00000546588 ANKLE1Q8NAG6 615 aa11.15□□□□□ -0.62
VPS29-203ENST00000546588 KCNH5Q8NCM2 988 aa11.15□□□□□ -0.62
VPS29-203ENST00000546588 POM121Q96HA1 1249 aa11.15□□□□□ -0.62
VPS29-203ENST00000546588 PLEKHF1Q96S99 279 aa11.15□□□□□ -0.62
VPS29-203ENST00000546588 SLAIN2Q9P270 581 aa11.15□□□□□ -0.62
VPS29-203ENST00000546588 EMILIN1Q9Y6C2 1016 aa11.15□□□□□ -0.62
VPS29-203ENST00000546588 MAP3K19Q56UN5 1328 aa11.14□□□□□ -0.63
VPS29-203ENST00000546588 RCCD1A6NED2 376 aa11.14□□□□□ -0.63
VPS29-203ENST00000546588 FOXO3O43524 673 aa11.14□□□□□ -0.63
VPS29-203ENST00000546588 DIAPH1O60610 1272 aaKnown RBP11.14□□□□□ -0.63
VPS29-203ENST00000546588 PRR20EP86478 221 aa11.14□□□□□ -0.63
VPS29-203ENST00000546588 PRR20CP86479 221 aa11.14□□□□□ -0.63
VPS29-203ENST00000546588 PRR20DP86480 221 aa11.14□□□□□ -0.63
VPS29-203ENST00000546588 PRR20BP86481 221 aa11.14□□□□□ -0.63
VPS29-203ENST00000546588 PRR20AP86496 221 aa11.14□□□□□ -0.63
VPS29-203ENST00000546588 CCDC27Q2M243 656 aa11.14□□□□□ -0.63
VPS29-203ENST00000546588 SPRYD7Q5W111 196 aa11.14□□□□□ -0.63
VPS29-203ENST00000546588 KRT28Q7Z3Y7 464 aa11.14□□□□□ -0.63
VPS29-203ENST00000546588 TBC1D2Q9BYX2 928 aa11.14□□□□□ -0.63
VPS29-203ENST00000546588 COL14A1Q05707 1796 aaKnown RBP11.13□□□□□ -0.63
VPS29-203ENST00000546588 IGSF1Q8N6C5 1336 aa11.13□□□□□ -0.63
VPS29-203ENST00000546588 PARP4Q9UKK3 1724 aaKnown RBP11.13□□□□□ -0.63
VPS29-203ENST00000546588 NWD2Q9ULI1 1742 aa11.13□□□□□ -0.63
VPS29-203ENST00000546588 ABTB2Q8N961 1025 aa11.13□□□□□ -0.63
VPS29-203ENST00000546588 NUDCQ9Y266 331 aa11.13□□□□□ -0.63
VPS29-203ENST00000546588 SLC10A3P09131 477 aa11.12□□□□□ -0.63
VPS29-203ENST00000546588 TNNT2P45379 298 aaPredicted RBP11.12□□□□□ -0.63
VPS29-203ENST00000546588 CNGB1Q14028 1251 aaPredicted RBP11.12□□□□□ -0.63
VPS29-203ENST00000546588 ZNF598Q86UK7 904 aaKnown RBP11.12□□□□□ -0.63
VPS29-203ENST00000546588 RUNDC1Q96C34 613 aa11.12□□□□□ -0.63
VPS29-203ENST00000546588 SIPA1L3O60292 1781 aaPredicted RBP11.12□□□□□ -0.63
VPS29-203ENST00000546588 NRAPQ86VF7 1730 aa11.12□□□□□ -0.63
VPS29-203ENST00000546588 ARHGEF25Q86VW2 580 aa11.11□□□□□ -0.63
VPS29-203ENST00000546588 PNNQ9H307 717 aaKnown RBP11.11□□□□□ -0.63
VPS29-203ENST00000546588 SHANK3Q9BYB0 1731 aa11.11□□□□□ -0.63
VPS29-203ENST00000546588 S1PR4O95977 384 aa11.1□□□□□ -0.63
VPS29-203ENST00000546588 HOXC9P31274 260 aa11.1□□□□□ -0.63
VPS29-203ENST00000546588 RRS1Q15050 365 aaKnown RBP11.1□□□□□ -0.63
VPS29-203ENST00000546588 KMT5BQ4FZB7 885 aa11.1□□□□□ -0.63
VPS29-203ENST00000546588 LIAT1Q6ZQX7 453 aa11.1□□□□□ -0.63
VPS29-203ENST00000546588 TRMT2AQ8IZ69 625 aaKnown RBP11.1□□□□□ -0.63
VPS29-203ENST00000546588 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.1□□□□□ -0.63
VPS29-203ENST00000546588 GCP02774 474 aa11.09□□□□□ -0.63
VPS29-203ENST00000546588 CFHP08603 1231 aa11.09□□□□□ -0.63
VPS29-203ENST00000546588 EIF4A2Q14240 407 aaKnown RBP11.09□□□□□ -0.63
VPS29-203ENST00000546588 DIXDC1Q155Q3 683 aa11.09□□□□□ -0.63
VPS29-203ENST00000546588 IP6K1Q92551 441 aa11.09□□□□□ -0.63
VPS29-203ENST00000546588 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.09□□□□□ -0.63
VPS29-203ENST00000546588 SCN11AQ9UI33 1791 aa11.08□□□□□ -0.64
VPS29-203ENST00000546588 PPEF1O14829 653 aaPredicted RBP11.08□□□□□ -0.64
VPS29-203ENST00000546588 DGAT1O75907 488 aa11.08□□□□□ -0.64
VPS29-203ENST00000546588 PDIA4P13667 645 aaKnown RBP11.08□□□□□ -0.64
VPS29-203ENST00000546588 FBLN1P23142 703 aa11.08□□□□□ -0.64
VPS29-203ENST00000546588 RFC5P40937 340 aa11.08□□□□□ -0.64
VPS29-203ENST00000546588 ZNF775Q96BV0 537 aaPredicted RBP11.08□□□□□ -0.64
VPS29-203ENST00000546588 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.07□□□□□ -0.64
VPS29-203ENST00000546588 SPDYE5A6NIY4 337 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms