RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 ADGRL3Q9HAR2 1447 aa17.55■□□□□ 0.4
HOXC11-202ENST00000546378 ADCK5Q3MIX3 580 aa17.55■□□□□ 0.4
HOXC11-202ENST00000546378 RAB11FIP4Q86YS3 637 aa17.55■□□□□ 0.4
HOXC11-202ENST00000546378 STX6O43752 255 aa17.55■□□□□ 0.4
HOXC11-202ENST00000546378 NBPF7P0C2Y1 421 aaPredicted RBP17.55■□□□□ 0.4
HOXC11-202ENST00000546378 ZNF771Q7L3S4 317 aaPredicted RBP17.55■□□□□ 0.4
HOXC11-202ENST00000546378 CADPS2Q86UW7 1296 aa17.55■□□□□ 0.4
HOXC11-202ENST00000546378 BRD1O95696 1058 aa17.54■□□□□ 0.4
HOXC11-202ENST00000546378 BOLA2Q9H3K6 86 aa17.54■□□□□ 0.4
HOXC11-202ENST00000546378 NCOA3Q9Y6Q9 1424 aa17.54■□□□□ 0.4
HOXC11-202ENST00000546378 WDR33Q9C0J8 1336 aaKnown RBP17.54■□□□□ 0.4
HOXC11-202ENST00000546378 PHF14O94880 888 aa17.53■□□□□ 0.4
HOXC11-202ENST00000546378 C9orf78Q9NZ63 289 aaPredicted RBP17.53■□□□□ 0.4
HOXC11-202ENST00000546378 ZNF330Q9Y3S2 320 aaPredicted RBP17.53■□□□□ 0.4
HOXC11-202ENST00000546378 KIF3AQ9Y496 699 aa17.53■□□□□ 0.4
HOXC11-202ENST00000546378 ERICH4A6NGS2 130 aa17.53■□□□□ 0.4
HOXC11-202ENST00000546378 GORABQ5T7V8 394 aa17.53■□□□□ 0.4
HOXC11-202ENST00000546378 LARP1BQ659C4 914 aaKnown RBP17.53■□□□□ 0.4
HOXC11-202ENST00000546378 PODXL2Q9NZ53 605 aa17.53■□□□□ 0.4
HOXC11-202ENST00000546378 FLT4P35916 1363 aa17.53■□□□□ 0.4
HOXC11-202ENST00000546378 CHGBP05060 677 aa17.53■□□□□ 0.4
HOXC11-202ENST00000546378 CYP2E1P05181 493 aaPredicted RBP17.52■□□□□ 0.4
HOXC11-202ENST00000546378 ISM2Q6H9L7 571 aa17.52■□□□□ 0.4
HOXC11-202ENST00000546378 CCDC186Q7Z3E2 898 aa17.52■□□□□ 0.4
HOXC11-202ENST00000546378 NLRP2Q9NX02 1062 aa17.52■□□□□ 0.4
HOXC11-202ENST00000546378 OVOS2A0A0J9YW53 1432 aa17.52■□□□□ 0.39
HOXC11-202ENST00000546378 OVOS2Q6IE36 1432 aa17.52■□□□□ 0.39
HOXC11-202ENST00000546378 COL3A1P02461 1466 aaPredicted RBP17.52■□□□□ 0.39
HOXC11-202ENST00000546378 ATP2B3Q16720 1220 aa17.52■□□□□ 0.39
HOXC11-202ENST00000546378 TMX1Q9H3N1 280 aa17.52■□□□□ 0.39
HOXC11-202ENST00000546378 MAP2P11137 1827 aaKnown RBP17.51■□□□□ 0.39
HOXC11-202ENST00000546378 USP32Q8NFA0 1604 aa17.51■□□□□ 0.39
HOXC11-202ENST00000546378 RGPD8O14715 1765 aaPredicted RBP17.51■□□□□ 0.39
HOXC11-202ENST00000546378 PI4KAP2A4QPH2 592 aa17.51■□□□□ 0.39
HOXC11-202ENST00000546378 RIOK3O14730 519 aaKnown RBP17.51■□□□□ 0.39
HOXC11-202ENST00000546378 PTPN21Q16825 1174 aa17.51■□□□□ 0.39
HOXC11-202ENST00000546378 PDCL2Q8N4E4 241 aa17.51■□□□□ 0.39
HOXC11-202ENST00000546378 PI4KAP1Q8N8J0 262 aa17.51■□□□□ 0.39
HOXC11-202ENST00000546378 KCNQ3O43525 872 aa17.51■□□□□ 0.39
HOXC11-202ENST00000546378 PTH1RQ03431 593 aa17.51■□□□□ 0.39
HOXC11-202ENST00000546378 IFIT2P09913 472 aaKnown RBP17.5■□□□□ 0.39
HOXC11-202ENST00000546378 NBPF6Q5VWK0 638 aa17.5■□□□□ 0.39
HOXC11-202ENST00000546378 NBPF4Q96M43 638 aa17.5■□□□□ 0.39
HOXC11-202ENST00000546378 PDRG1Q9NUG6 133 aa17.5■□□□□ 0.39
HOXC11-202ENST00000546378 KNDC1Q76NI1 1749 aa17.5■□□□□ 0.39
HOXC11-202ENST00000546378 ZNF853P0CG23 659 aa17.5■□□□□ 0.39
HOXC11-202ENST00000546378 CCDC183Q5T5S1 534 aa17.5■□□□□ 0.39
HOXC11-202ENST00000546378 BCL2L12Q9HB09 334 aa17.5■□□□□ 0.39
HOXC11-202ENST00000546378 SBNO1A3KN83 1393 aa17.49■□□□□ 0.39
HOXC11-202ENST00000546378 ANKARQ7Z5J8 1434 aa17.49■□□□□ 0.39
HOXC11-202ENST00000546378 LRRC7Q96NW7 1537 aa17.49■□□□□ 0.39
HOXC11-202ENST00000546378 ZNF500O60304 480 aaPredicted RBP17.49■□□□□ 0.39
HOXC11-202ENST00000546378 CWF19L2Q2TBE0 894 aaKnown RBP17.49■□□□□ 0.39
HOXC11-202ENST00000546378 KCNH5Q8NCM2 988 aa17.49■□□□□ 0.39
HOXC11-202ENST00000546378 SHPRHQ149N8 1683 aa17.49■□□□□ 0.39
HOXC11-202ENST00000546378 ZSCAN22P10073 491 aaPredicted RBP17.49■□□□□ 0.39
HOXC11-202ENST00000546378 MPRIPQ6WCQ1 1025 aa17.49■□□□□ 0.39
HOXC11-202ENST00000546378 AACSQ86V21 672 aa17.49■□□□□ 0.39
HOXC11-202ENST00000546378 FAM227BQ96M60 508 aa17.49■□□□□ 0.39
HOXC11-202ENST00000546378 DYNC1I1O14576 645 aa17.48■□□□□ 0.39
HOXC11-202ENST00000546378 AP5Z1O43299 807 aa17.48■□□□□ 0.39
HOXC11-202ENST00000546378 LIG1P18858 919 aa17.48■□□□□ 0.39
HOXC11-202ENST00000546378 TPD52L1Q16890 204 aaPredicted RBP17.48■□□□□ 0.39
HOXC11-202ENST00000546378 RUFY3Q7L099 469 aa17.48■□□□□ 0.39
HOXC11-202ENST00000546378 PDLIM2Q96JY6 352 aa17.48■□□□□ 0.39
HOXC11-202ENST00000546378 SNX14Q9Y5W7 946 aa17.48■□□□□ 0.39
HOXC11-202ENST00000546378 CHL1O00533 1208 aa17.48■□□□□ 0.39
HOXC11-202ENST00000546378 MYL6BP14649 208 aa17.48■□□□□ 0.39
HOXC11-202ENST00000546378 CCT4P50991 539 aaKnown RBP17.48■□□□□ 0.39
HOXC11-202ENST00000546378 ARID5BQ14865 1188 aa17.48■□□□□ 0.39
HOXC11-202ENST00000546378 CHST3Q7LGC8 479 aa17.48■□□□□ 0.39
HOXC11-202ENST00000546378 FAM177A1Q8N128 213 aaPredicted RBP17.48■□□□□ 0.39
HOXC11-202ENST00000546378 DNAJC2Q99543 621 aaKnown RBP17.48■□□□□ 0.39
HOXC11-202ENST00000546378 DACT1Q9NYF0 836 aa17.48■□□□□ 0.39
HOXC11-202ENST00000546378 RAB11FIP3O75154 756 aa17.48■□□□□ 0.39
HOXC11-202ENST00000546378 DNAJC25Q9H1X3 360 aa17.48■□□□□ 0.39
HOXC11-202ENST00000546378 SOS1Q07889 1333 aaPredicted RBP17.48■□□□□ 0.39
HOXC11-202ENST00000546378 HSP90AA4PQ58FG1 418 aa17.47■□□□□ 0.39
HOXC11-202ENST00000546378 SSH2Q76I76 1423 aa17.47■□□□□ 0.39
HOXC11-202ENST00000546378 RHPN1Q8TCX5 695 aa17.47■□□□□ 0.39
HOXC11-202ENST00000546378 ZFP91Q96JP5 570 aaPredicted RBP17.47■□□□□ 0.39
HOXC11-202ENST00000546378 CDK12Q9NYV4 1490 aaPredicted RBP17.47■□□□□ 0.39
HOXC11-202ENST00000546378 AXIN2Q9Y2T1 843 aa17.47■□□□□ 0.39
HOXC11-202ENST00000546378 ZBTB22O15209 634 aa17.47■□□□□ 0.39
HOXC11-202ENST00000546378 GNAI3P08754 354 aa17.47■□□□□ 0.39
HOXC11-202ENST00000546378 IP6K1Q92551 441 aa17.47■□□□□ 0.39
HOXC11-202ENST00000546378 CHPF2Q9P2E5 772 aa17.47■□□□□ 0.39
HOXC11-202ENST00000546378 CGNQ9P2M7 1197 aaKnown RBP17.47■□□□□ 0.39
HOXC11-202ENST00000546378 SLFNL1Q499Z3 407 aa17.46■□□□□ 0.39
HOXC11-202ENST00000546378 CDC37L1Q7L3B6 337 aa17.46■□□□□ 0.39
HOXC11-202ENST00000546378 ANKRD24Q8TF21 1146 aa17.46■□□□□ 0.39
HOXC11-202ENST00000546378 FSD1Q9BTV5 496 aa17.46■□□□□ 0.39
HOXC11-202ENST00000546378 FTOQ9C0B1 505 aaKnown RBP eCLIP17.46■□□□□ 0.39
HOXC11-202ENST00000546378 TNMDQ9H2S6 317 aa17.46■□□□□ 0.39
HOXC11-202ENST00000546378 SLAIN2Q9P270 581 aa17.46■□□□□ 0.39
HOXC11-202ENST00000546378 USP31Q70CQ4 1352 aa17.46■□□□□ 0.39
HOXC11-202ENST00000546378 H3BQV1 296 aa17.46■□□□□ 0.39
HOXC11-202ENST00000546378 ANO6Q4KMQ2 910 aa17.46■□□□□ 0.39
HOXC11-202ENST00000546378 IFFO2Q5TF58 517 aa17.46■□□□□ 0.39
HOXC11-202ENST00000546378 CCDC30Q5VVM6 783 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms