RNA–Protein interactions for RNA: ENST00000544550.5

SNHG1-220, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 636 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-220ENST00000544550 CDK19Q9BWU1 502 aa5.98□□□□□ -1.45
SNHG1-220ENST00000544550 PNPLA7Q6ZV29 1317 aa5.98□□□□□ -1.45
SNHG1-220ENST00000544550 NBPF26B4DH59 902 aa5.97□□□□□ -1.45
SNHG1-220ENST00000544550 BHMG1C9JSJ3 638 aaPredicted RBP5.97□□□□□ -1.45
SNHG1-220ENST00000544550 PROX2Q3B8N5 592 aa5.97□□□□□ -1.45
SNHG1-220ENST00000544550 KLRG1Q96E93 195 aa5.97□□□□□ -1.45
SNHG1-220ENST00000544550 ZBED2Q9BTP6 218 aa5.97□□□□□ -1.45
SNHG1-220ENST00000544550 BEGAINQ9BUH8 593 aa5.97□□□□□ -1.45
SNHG1-220ENST00000544550 LRRC4BQ9NT99 713 aa5.97□□□□□ -1.45
SNHG1-220ENST00000544550 ABCC6O95255 1503 aa5.97□□□□□ -1.45
SNHG1-220ENST00000544550 CPSF1Q10570 1443 aaKnown RBP5.97□□□□□ -1.45
SNHG1-220ENST00000544550 PPIP5K1Q6PFW1 1433 aa5.97□□□□□ -1.45
SNHG1-220ENST00000544550 NHSQ6T4R5 1651 aa5.97□□□□□ -1.45
SNHG1-220ENST00000544550 AKAP12Q02952 1782 aa5.96□□□□□ -1.46
SNHG1-220ENST00000544550 SLIT3O75094 1523 aa5.96□□□□□ -1.46
SNHG1-220ENST00000544550 GFRA3O60609 400 aa5.96□□□□□ -1.46
SNHG1-220ENST00000544550 SH3D19Q5HYK7 790 aa5.96□□□□□ -1.46
SNHG1-220ENST00000544550 PNMA3Q9UL41 463 aa5.96□□□□□ -1.46
SNHG1-220ENST00000544550 NRG2O14511 850 aaPredicted RBP5.95□□□□□ -1.46
SNHG1-220ENST00000544550 IL2RBP14784 551 aa5.95□□□□□ -1.46
SNHG1-220ENST00000544550 DNAJB2P25686 324 aa5.95□□□□□ -1.46
SNHG1-220ENST00000544550 COL24A1Q17RW2 1714 aa5.95□□□□□ -1.46
SNHG1-220ENST00000544550 ZNF787Q6DD87 383 aa5.95□□□□□ -1.46
SNHG1-220ENST00000544550 ARHGEF25Q86VW2 580 aa5.95□□□□□ -1.46
SNHG1-220ENST00000544550 C16orf71Q8IYS4 520 aaPredicted RBP5.95□□□□□ -1.46
SNHG1-220ENST00000544550 FLAD1Q8NFF5 587 aa5.95□□□□□ -1.46
SNHG1-220ENST00000544550 RSPH6AQ9H0K4 717 aa5.95□□□□□ -1.46
SNHG1-220ENST00000544550 WWC3Q9ULE0 1092 aa5.95□□□□□ -1.46
SNHG1-220ENST00000544550 TRPM1Q7Z4N2 1603 aa5.95□□□□□ -1.46
SNHG1-220ENST00000544550 QSER1Q2KHR3 1735 aa5.94□□□□□ -1.46
SNHG1-220ENST00000544550 ARHGEF28Q8N1W1 1705 aaKnown RBP5.94□□□□□ -1.46
SNHG1-220ENST00000544550 SRPK2P78362 688 aaKnown RBP5.94□□□□□ -1.46
SNHG1-220ENST00000544550 FSTL1Q12841 308 aa5.94□□□□□ -1.46
SNHG1-220ENST00000544550 SKIV2LQ15477 1246 aaKnown RBP5.94□□□□□ -1.46
SNHG1-220ENST00000544550 TMEM134Q9H6X4 195 aa5.94□□□□□ -1.46
SNHG1-220ENST00000544550 KIAA1468Q9P260 1216 aa5.94□□□□□ -1.46
SNHG1-220ENST00000544550 WNK3Q9BYP7 1800 aa5.94□□□□□ -1.46
SNHG1-220ENST00000544550 CEP350Q5VT06 3117 aa5.94□□□□□ -1.46
SNHG1-220ENST00000544550 SMAPO00193 183 aa5.93□□□□□ -1.46
SNHG1-220ENST00000544550 CD46P15529 392 aa5.93□□□□□ -1.46
SNHG1-220ENST00000544550 KCNC4Q03721 635 aa5.93□□□□□ -1.46
SNHG1-220ENST00000544550 ANKK1Q8NFD2 765 aa5.93□□□□□ -1.46
SNHG1-220ENST00000544550 PCMTD1Q96MG8 357 aaPredicted RBP5.93□□□□□ -1.46
SNHG1-220ENST00000544550 RABGEF1Q9UJ41 708 aa5.93□□□□□ -1.46
SNHG1-220ENST00000544550 CCNL1Q9UK58 526 aaPredicted RBP5.93□□□□□ -1.46
SNHG1-220ENST00000544550 IGSF1Q8N6C5 1336 aa5.93□□□□□ -1.46
SNHG1-220ENST00000544550 MSL1Q68DK7 614 aa5.92□□□□□ -1.46
SNHG1-220ENST00000544550 COL23A1Q86Y22 540 aaPredicted RBP5.92□□□□□ -1.46
SNHG1-220ENST00000544550 SULF1Q8IWU6 871 aa5.92□□□□□ -1.46
SNHG1-220ENST00000544550 DCAF11Q8TEB1 546 aa5.92□□□□□ -1.46
SNHG1-220ENST00000544550 NLRP2Q9NX02 1062 aa5.92□□□□□ -1.46
SNHG1-220ENST00000544550 TTC21AQ8NDW8 1320 aa5.92□□□□□ -1.46
SNHG1-220ENST00000544550 ANKRD36BQ8N2N9 1353 aa5.92□□□□□ -1.46
SNHG1-220ENST00000544550 DIXDC1Q155Q3 683 aa5.91□□□□□ -1.46
SNHG1-220ENST00000544550 MYSM1Q5VVJ2 828 aa5.91□□□□□ -1.46
SNHG1-220ENST00000544550 SYTL4Q96C24 671 aaPredicted RBP5.91□□□□□ -1.46
SNHG1-220ENST00000544550 TBC1D2Q9BYX2 928 aa5.91□□□□□ -1.46
SNHG1-220ENST00000544550 CABP1Q9NZU7 370 aa5.91□□□□□ -1.46
SNHG1-220ENST00000544550 USP47Q96K76 1375 aa5.91□□□□□ -1.46
SNHG1-220ENST00000544550 PLEKHG2Q9H7P9 1386 aa5.91□□□□□ -1.46
SNHG1-220ENST00000544550 WDR90Q96KV7 1748 aa5.91□□□□□ -1.46
SNHG1-220ENST00000544550 NSD3Q9BZ95 1437 aa5.91□□□□□ -1.46
SNHG1-220ENST00000544550 COL18A1P39060 1754 aa5.9□□□□□ -1.46
SNHG1-220ENST00000544550 CICQ96RK0 1608 aaPredicted RBP5.9□□□□□ -1.46
SNHG1-220ENST00000544550 DDX11L8A8MPP1 907 aa5.9□□□□□ -1.46
SNHG1-220ENST00000544550 HSPA1AP0DMV8 641 aaKnown RBP5.9□□□□□ -1.46
SNHG1-220ENST00000544550 HSPA1BP0DMV9 641 aaKnown RBP5.9□□□□□ -1.46
SNHG1-220ENST00000544550 DDX54Q8TDD1 881 aaKnown RBP5.9□□□□□ -1.46
SNHG1-220ENST00000544550 TTC21BQ7Z4L5 1316 aa5.9□□□□□ -1.47
SNHG1-220ENST00000544550 KDM2BQ8NHM5 1336 aa5.9□□□□□ -1.47
SNHG1-220ENST00000544550 BTAF1O14981 1849 aa5.9□□□□□ -1.47
SNHG1-220ENST00000544550 C10orf71Q711Q0 1435 aa5.9□□□□□ -1.47
SNHG1-220ENST00000544550 KCNQ4P56696 695 aa5.89□□□□□ -1.47
SNHG1-220ENST00000544550 PPARGC1BQ86YN6 1023 aaKnown RBP5.89□□□□□ -1.47
SNHG1-220ENST00000544550 PROCA1Q8NCQ7 364 aaPredicted RBP5.89□□□□□ -1.47
SNHG1-220ENST00000544550 SMC1BQ8NDV3 1235 aa5.89□□□□□ -1.47
SNHG1-220ENST00000544550 SPIRE2Q8WWL2 714 aa5.89□□□□□ -1.47
SNHG1-220ENST00000544550 GNL3Q9BVP2 549 aaKnown RBP eCLIP5.89□□□□□ -1.47
SNHG1-220ENST00000544550 NMRK2Q9NPI5 230 aa5.89□□□□□ -1.47
SNHG1-220ENST00000544550 POLR3EQ9NVU0 708 aa5.89□□□□□ -1.47
SNHG1-220ENST00000544550 CENPJQ9HC77 1338 aaPredicted RBP5.89□□□□□ -1.47
SNHG1-220ENST00000544550 PIK3C2AO00443 1686 aa5.88□□□□□ -1.47
SNHG1-220ENST00000544550 QRICH2Q9H0J4 1663 aa5.88□□□□□ -1.47
SNHG1-220ENST00000544550 LCE2BO14633 110 aa5.88□□□□□ -1.47
SNHG1-220ENST00000544550 CLK2P49760 499 aaKnown RBP5.88□□□□□ -1.47
SNHG1-220ENST00000544550 TGFB2P61812 414 aa5.88□□□□□ -1.47
SNHG1-220ENST00000544550 HTRA3P83110 453 aa5.88□□□□□ -1.47
SNHG1-220ENST00000544550 SWT1Q5T5J6 900 aaKnown RBP5.88□□□□□ -1.47
SNHG1-220ENST00000544550 ANKRD24Q8TF21 1146 aa5.88□□□□□ -1.47
SNHG1-220ENST00000544550 ZNF775Q96BV0 537 aaPredicted RBP5.88□□□□□ -1.47
SNHG1-220ENST00000544550 SEPT9Q9UHD8 586 aaPredicted RBP5.88□□□□□ -1.47
SNHG1-220ENST00000544550 NFAT5O94916 1531 aa5.88□□□□□ -1.47
SNHG1-220ENST00000544550 FLIIQ13045 1269 aa5.87□□□□□ -1.47
SNHG1-220ENST00000544550 TUSC1Q2TAM9 212 aa5.87□□□□□ -1.47
SNHG1-220ENST00000544550 LAPTM4BQ86VI4 370 aa5.87□□□□□ -1.47
SNHG1-220ENST00000544550 LIMD1Q9UGP4 676 aa5.87□□□□□ -1.47
SNHG1-220ENST00000544550 BCS1LQ9Y276 419 aa5.87□□□□□ -1.47
SNHG1-220ENST00000544550 EVC2Q86UK5 1308 aa5.87□□□□□ -1.47
SNHG1-220ENST00000544550 NSD2O96028 1365 aa5.87□□□□□ -1.47
SNHG1-220ENST00000544550 USP31Q70CQ4 1352 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms