RNA–Protein interactions for RNA: ENST00000544246.5

PCDH9-204, Transcript of protocadherin 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PCDH9, Length 6,234 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-204ENST00000544246 BCAR3O75815 825 aa11.97□□□□□ -0.49
PCDH9-204ENST00000544246 KIF4AO95239 1232 aa11.97□□□□□ -0.49
PCDH9-204ENST00000544246 TTC21AQ8NDW8 1320 aa11.97□□□□□ -0.49
PCDH9-204ENST00000544246 SSRP1Q08945 709 aaKnown RBP11.96□□□□□ -0.49
PCDH9-204ENST00000544246 CTCFLQ8NI51 663 aaPredicted RBP11.96□□□□□ -0.49
PCDH9-204ENST00000544246 TRMT1Q9NXH9 659 aaKnown RBP11.96□□□□□ -0.49
PCDH9-204ENST00000544246 FANCAO15360 1455 aa11.96□□□□□ -0.49
PCDH9-204ENST00000544246 A0A087WZG4 1122 aa11.96□□□□□ -0.49
PCDH9-204ENST00000544246 PSMC4P43686 418 aa11.96□□□□□ -0.49
PCDH9-204ENST00000544246 EHBP1Q8NDI1 1231 aa11.96□□□□□ -0.49
PCDH9-204ENST00000544246 CLGNO14967 610 aa11.96□□□□□ -0.49
PCDH9-204ENST00000544246 SPTY2D1Q68D10 685 aaPredicted RBP11.96□□□□□ -0.49
PCDH9-204ENST00000544246 SMC6Q96SB8 1091 aa11.96□□□□□ -0.49
PCDH9-204ENST00000544246 MAP7D1Q3KQU3 841 aa11.96□□□□□ -0.5
PCDH9-204ENST00000544246 DZIP1Q86YF9 867 aaKnown RBP11.96□□□□□ -0.5
PCDH9-204ENST00000544246 WDR66Q8TBY9 1149 aa11.96□□□□□ -0.5
PCDH9-204ENST00000544246 DDX54Q8TDD1 881 aaKnown RBP11.96□□□□□ -0.5
PCDH9-204ENST00000544246 CALML4Q96GE6 196 aa11.96□□□□□ -0.5
PCDH9-204ENST00000544246 C8orf76Q96K31 380 aa11.96□□□□□ -0.5
PCDH9-204ENST00000544246 PAIP2Q9BPZ3 127 aaKnown RBP11.96□□□□□ -0.5
PCDH9-204ENST00000544246 SLU7O95391 586 aaKnown RBP11.96□□□□□ -0.5
PCDH9-204ENST00000544246 JADE2Q9NQC1 790 aa11.96□□□□□ -0.5
PCDH9-204ENST00000544246 PLEKHH1Q9ULM0 1364 aa11.95□□□□□ -0.5
PCDH9-204ENST00000544246 TMC6Q7Z403 805 aa11.95□□□□□ -0.5
PCDH9-204ENST00000544246 AKAP2Q9Y2D5 859 aa11.95□□□□□ -0.5
PCDH9-204ENST00000544246 HSPA2P54652 639 aa11.95□□□□□ -0.5
PCDH9-204ENST00000544246 PPP4R3BQ5MIZ7 849 aa11.95□□□□□ -0.5
PCDH9-204ENST00000544246 TSR2Q969E8 191 aaKnown RBP11.95□□□□□ -0.5
PCDH9-204ENST00000544246 RASAL2Q9UJF2 1139 aa11.95□□□□□ -0.5
PCDH9-204ENST00000544246 CCDC194A0A1B0GVG4 234 aa11.95□□□□□ -0.5
PCDH9-204ENST00000544246 TCERG1LQ5VWI1 586 aa11.95□□□□□ -0.5
PCDH9-204ENST00000544246 TOM1L2Q6ZVM7 507 aa11.95□□□□□ -0.5
PCDH9-204ENST00000544246 MINDY4BA8MYZ0 360 aa11.95□□□□□ -0.5
PCDH9-204ENST00000544246 STMN4Q9H169 189 aaPredicted RBP11.95□□□□□ -0.5
PCDH9-204ENST00000544246 CCDC172P0C7W6 258 aa11.95□□□□□ -0.5
PCDH9-204ENST00000544246 NLRP5P59047 1200 aa11.95□□□□□ -0.5
PCDH9-204ENST00000544246 SNW1Q13573 536 aaKnown RBP11.95□□□□□ -0.5
PCDH9-204ENST00000544246 MVPQ14764 893 aaKnown RBP11.95□□□□□ -0.5
PCDH9-204ENST00000544246 CAVIN4Q5BKX8 364 aa11.95□□□□□ -0.5
PCDH9-204ENST00000544246 ZNF354CQ86Y25 554 aa11.95□□□□□ -0.5
PCDH9-204ENST00000544246 ABCF2Q9UG63 623 aa11.95□□□□□ -0.5
PCDH9-204ENST00000544246 MYCNP04198 464 aaPredicted RBP11.94□□□□□ -0.5
PCDH9-204ENST00000544246 ZNF530Q6P9A1 599 aaPredicted RBP11.94□□□□□ -0.5
PCDH9-204ENST00000544246 FERMT3Q86UX7 667 aa11.94□□□□□ -0.5
PCDH9-204ENST00000544246 RPUSD2Q8IZ73 545 aaKnown RBP11.94□□□□□ -0.5
PCDH9-204ENST00000544246 OTUD6BQ8N6M0 293 aa11.94□□□□□ -0.5
PCDH9-204ENST00000544246 BICDL1Q6ZP65 573 aa11.94□□□□□ -0.5
PCDH9-204ENST00000544246 SLC12A7Q9Y666 1083 aa11.94□□□□□ -0.5
PCDH9-204ENST00000544246 DYNC1I1O14576 645 aa11.94□□□□□ -0.5
PCDH9-204ENST00000544246 METTL24Q5JXM2 366 aa11.94□□□□□ -0.5
PCDH9-204ENST00000544246 SYCP3Q8IZU3 236 aa11.94□□□□□ -0.5
PCDH9-204ENST00000544246 C16orf45Q96MC5 204 aaPredicted RBP11.94□□□□□ -0.5
PCDH9-204ENST00000544246 PLVAPQ9BX97 442 aa11.94□□□□□ -0.5
PCDH9-204ENST00000544246 TTC12Q9H892 705 aaPredicted RBP11.94□□□□□ -0.5
PCDH9-204ENST00000544246 PPP2R1AP30153 589 aa11.94□□□□□ -0.5
PCDH9-204ENST00000544246 STX1AQ16623 288 aa11.94□□□□□ -0.5
PCDH9-204ENST00000544246 ZNF444Q8N0Y2 327 aaPredicted RBP11.94□□□□□ -0.5
PCDH9-204ENST00000544246 TBC1D5Q92609 795 aa11.93□□□□□ -0.5
PCDH9-204ENST00000544246 PYM1Q9BRP8 204 aaKnown RBP11.93□□□□□ -0.5
PCDH9-204ENST00000544246 SH2B1Q9NRF2 756 aaPredicted RBP11.93□□□□□ -0.5
PCDH9-204ENST00000544246 WDR7Q9Y4E6 1490 aa11.93□□□□□ -0.5
PCDH9-204ENST00000544246 FYCO1Q9BQS8 1478 aa11.93□□□□□ -0.5
PCDH9-204ENST00000544246 HMGB1P09429 215 aaKnown RBP11.93□□□□□ -0.5
PCDH9-204ENST00000544246 NUTM1Q86Y26 1132 aa11.93□□□□□ -0.5
PCDH9-204ENST00000544246 CDCA7LQ96GN5 454 aa11.93□□□□□ -0.5
PCDH9-204ENST00000544246 SLC52A1Q9NWF4 448 aa11.93□□□□□ -0.5
PCDH9-204ENST00000544246 ARHGEF11O15085 1522 aa11.93□□□□□ -0.5
PCDH9-204ENST00000544246 IVLP07476 585 aa11.93□□□□□ -0.5
PCDH9-204ENST00000544246 PRPF40BQ6NWY9 871 aaKnown RBP11.93□□□□□ -0.5
PCDH9-204ENST00000544246 IL1RAPL2Q9NP60 686 aa11.93□□□□□ -0.5
PCDH9-204ENST00000544246 CEP83Q9Y592 693 aa11.93□□□□□ -0.5
PCDH9-204ENST00000544246 BTBD11A6QL63 1104 aa11.93□□□□□ -0.5
PCDH9-204ENST00000544246 HMGB2P26583 209 aaKnown RBP11.93□□□□□ -0.5
PCDH9-204ENST00000544246 ANKS4BQ8N8V4 417 aa11.93□□□□□ -0.5
PCDH9-204ENST00000544246 KIF21BO75037 1637 aa11.93□□□□□ -0.5
PCDH9-204ENST00000544246 GOLIM4O00461 696 aa11.93□□□□□ -0.5
PCDH9-204ENST00000544246 TTC14Q96N46 770 aa11.93□□□□□ -0.5
PCDH9-204ENST00000544246 LRRC27Q9C0I9 530 aa11.93□□□□□ -0.5
PCDH9-204ENST00000544246 NAPBQ9H115 298 aa11.93□□□□□ -0.5
PCDH9-204ENST00000544246 SYNCQ9H7C4 482 aa11.93□□□□□ -0.5
PCDH9-204ENST00000544246 HYPKQ9NX55 129 aa11.93□□□□□ -0.5
PCDH9-204ENST00000544246 MKRN1Q9UHC7 482 aaKnown RBP11.93□□□□□ -0.5
PCDH9-204ENST00000544246 XPCQ01831 940 aaPredicted RBP11.92□□□□□ -0.5
PCDH9-204ENST00000544246 WDR78Q5VTH9 848 aa11.92□□□□□ -0.5
PCDH9-204ENST00000544246 CCDC63Q8NA47 563 aa11.92□□□□□ -0.5
PCDH9-204ENST00000544246 RGS22Q8NE09 1264 aa11.92□□□□□ -0.5
PCDH9-204ENST00000544246 ZFP91Q96JP5 570 aaPredicted RBP11.92□□□□□ -0.5
PCDH9-204ENST00000544246 CCDC77Q9BR77 488 aa11.92□□□□□ -0.5
PCDH9-204ENST00000544246 ATF7IPQ6VMQ6 1270 aa11.92□□□□□ -0.5
PCDH9-204ENST00000544246 BACH2Q9BYV9 841 aa11.92□□□□□ -0.5
PCDH9-204ENST00000544246 MYO1BO43795 1136 aa11.92□□□□□ -0.5
PCDH9-204ENST00000544246 CFAP58Q5T655 872 aa11.92□□□□□ -0.5
PCDH9-204ENST00000544246 CCDC12Q8WUD4 166 aaPredicted RBP11.92□□□□□ -0.5
PCDH9-204ENST00000544246 PRXQ9BXM0 1461 aa11.92□□□□□ -0.5
PCDH9-204ENST00000544246 CCDC174Q6PII3 467 aa11.92□□□□□ -0.5
PCDH9-204ENST00000544246 CEP135Q66GS9 1140 aa11.92□□□□□ -0.5
PCDH9-204ENST00000544246 GOLGA8AA7E2F4 631 aa11.91□□□□□ -0.5
PCDH9-204ENST00000544246 GOLGA8BA8MQT2 603 aa11.91□□□□□ -0.5
PCDH9-204ENST00000544246 SULT6B1Q6IMI4 303 aa11.91□□□□□ -0.5
PCDH9-204ENST00000544246 IQCA1Q86XH1 822 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms