RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 F13A1P00488 732 aa16.48■□□□□ 0.23
VPS33A-208ENST00000543633 DNAAF4Q8WXU2 420 aa16.48■□□□□ 0.23
VPS33A-208ENST00000543633 NFAT5O94916 1531 aa16.48■□□□□ 0.23
VPS33A-208ENST00000543633 SRGAP3O43295 1099 aa16.48■□□□□ 0.23
VPS33A-208ENST00000543633 AK2P54819 239 aa16.48■□□□□ 0.23
VPS33A-208ENST00000543633 BEND3Q5T5X7 828 aa16.48■□□□□ 0.23
VPS33A-208ENST00000543633 VPS53Q5VIR6 699 aa16.48■□□□□ 0.23
VPS33A-208ENST00000543633 SMC3Q9UQE7 1217 aa16.48■□□□□ 0.23
VPS33A-208ENST00000543633 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.48■□□□□ 0.23
VPS33A-208ENST00000543633 RUFY3Q7L099 469 aa16.47■□□□□ 0.23
VPS33A-208ENST00000543633 ERC1Q8IUD2 1116 aa16.47■□□□□ 0.23
VPS33A-208ENST00000543633 SYT1P21579 422 aa16.46■□□□□ 0.23
VPS33A-208ENST00000543633 EIF4A1P60842 406 aaKnown RBP16.46■□□□□ 0.23
VPS33A-208ENST00000543633 PIBF1Q8WXW3 757 aa16.46■□□□□ 0.23
VPS33A-208ENST00000543633 NECTIN2Q92692 538 aa16.46■□□□□ 0.23
VPS33A-208ENST00000543633 GPATCH3Q96I76 525 aa16.46■□□□□ 0.23
VPS33A-208ENST00000543633 PHAXQ9H814 394 aaKnown RBP16.46■□□□□ 0.23
VPS33A-208ENST00000543633 PRIMPOLQ96LW4 560 aa16.46■□□□□ 0.23
VPS33A-208ENST00000543633 TMEM94Q12767 1356 aa16.46■□□□□ 0.23
VPS33A-208ENST00000543633 ALDH1L1O75891 902 aa16.45■□□□□ 0.22
VPS33A-208ENST00000543633 GDPD2Q9HCC8 539 aa16.45■□□□□ 0.22
VPS33A-208ENST00000543633 DIAPH3Q9NSV4 1193 aa16.45■□□□□ 0.22
VPS33A-208ENST00000543633 CNPY2Q9Y2B0 182 aa16.45■□□□□ 0.22
VPS33A-208ENST00000543633 TPM3P06753 285 aa16.45■□□□□ 0.22
VPS33A-208ENST00000543633 RASEFQ8IZ41 740 aa16.45■□□□□ 0.22
VPS33A-208ENST00000543633 VSIG10Q8N0Z9 540 aa16.45■□□□□ 0.22
VPS33A-208ENST00000543633 FUCA2Q9BTY2 467 aa16.45■□□□□ 0.22
VPS33A-208ENST00000543633 C19orf44Q9H6X5 657 aa16.45■□□□□ 0.22
VPS33A-208ENST00000543633 HYPKQ9NX55 129 aa16.45■□□□□ 0.22
VPS33A-208ENST00000543633 CCDC171Q6TFL3 1326 aa16.44■□□□□ 0.22
VPS33A-208ENST00000543633 HIP1O00291 1037 aa16.44■□□□□ 0.22
VPS33A-208ENST00000543633 HMGN5P82970 282 aaKnown RBP16.44■□□□□ 0.22
VPS33A-208ENST00000543633 C14orf37Q86TY3 774 aa16.44■□□□□ 0.22
VPS33A-208ENST00000543633 ZSWIM6Q9HCJ5 1215 aa16.44■□□□□ 0.22
VPS33A-208ENST00000543633 ADCY9O60503 1353 aa16.44■□□□□ 0.22
VPS33A-208ENST00000543633 CAMTA1Q9Y6Y1 1673 aa16.43■□□□□ 0.22
VPS33A-208ENST00000543633 CLASRPQ8N2M8 674 aaKnown RBP16.43■□□□□ 0.22
VPS33A-208ENST00000543633 SNRKQ9NRH2 765 aa16.43■□□□□ 0.22
VPS33A-208ENST00000543633 ECHDC1Q9NTX5 307 aa16.43■□□□□ 0.22
VPS33A-208ENST00000543633 PHF8Q9UPP1 1060 aa16.43■□□□□ 0.22
VPS33A-208ENST00000543633 NBPF7P0C2Y1 421 aaPredicted RBP16.43■□□□□ 0.22
VPS33A-208ENST00000543633 CASTP20810 708 aaKnown RBP16.43■□□□□ 0.22
VPS33A-208ENST00000543633 MYRIPQ8NFW9 859 aa16.43■□□□□ 0.22
VPS33A-208ENST00000543633 IP6K1Q92551 441 aa16.43■□□□□ 0.22
VPS33A-208ENST00000543633 SPTLC3Q9NUV7 552 aa16.43■□□□□ 0.22
VPS33A-208ENST00000543633 SIPA1L3O60292 1781 aaPredicted RBP16.43■□□□□ 0.22
VPS33A-208ENST00000543633 XIRP1Q702N8 1843 aaKnown RBP16.43■□□□□ 0.22
VPS33A-208ENST00000543633 EVI5LQ96CN4 794 aa16.42■□□□□ 0.22
VPS33A-208ENST00000543633 MTMR6Q9Y217 621 aa16.42■□□□□ 0.22
VPS33A-208ENST00000543633 CYP46A1Q9Y6A2 500 aa16.42■□□□□ 0.22
VPS33A-208ENST00000543633 DCCP43146 1447 aa16.42■□□□□ 0.22
VPS33A-208ENST00000543633 ADAMTS7Q9UKP4 1686 aa16.42■□□□□ 0.22
VPS33A-208ENST00000543633 KDM4AO75164 1064 aa16.41■□□□□ 0.22
VPS33A-208ENST00000543633 GTF2F1P35269 517 aaKnown RBP eCLIP16.41■□□□□ 0.22
VPS33A-208ENST00000543633 CWC27Q6UX04 472 aaKnown RBP16.41■□□□□ 0.22
VPS33A-208ENST00000543633 PDRG1Q9NUG6 133 aa16.41■□□□□ 0.22
VPS33A-208ENST00000543633 CHPF2Q9P2E5 772 aa16.41■□□□□ 0.22
VPS33A-208ENST00000543633 USP25Q9UHP3 1055 aa16.41■□□□□ 0.22
VPS33A-208ENST00000543633 MRC1P22897 1456 aa16.41■□□□□ 0.22
VPS33A-208ENST00000543633 PI4KAP2A4QPH2 592 aa16.41■□□□□ 0.22
VPS33A-208ENST00000543633 ADCY5O95622 1261 aa16.41■□□□□ 0.22
VPS33A-208ENST00000543633 PI4KAP1Q8N8J0 262 aa16.41■□□□□ 0.22
VPS33A-208ENST00000543633 ELP1O95163 1332 aa16.41■□□□□ 0.22
VPS33A-208ENST00000543633 MAP4K4O95819 1239 aaPredicted RBP16.4■□□□□ 0.22
VPS33A-208ENST00000543633 GJB2P29033 226 aa16.4■□□□□ 0.22
VPS33A-208ENST00000543633 ESCO1Q5FWF5 840 aa16.4■□□□□ 0.22
VPS33A-208ENST00000543633 AKAP4Q5JQC9 854 aa16.4■□□□□ 0.22
VPS33A-208ENST00000543633 ALDH8A1Q9H2A2 487 aaPredicted RBP16.4■□□□□ 0.22
VPS33A-208ENST00000543633 DBF4Q9UBU7 674 aaPredicted RBP16.4■□□□□ 0.22
VPS33A-208ENST00000543633 C1orf167Q5SNV9 1468 aa16.4■□□□□ 0.22
VPS33A-208ENST00000543633 HCLS1P14317 486 aaPredicted RBP16.4■□□□□ 0.22
VPS33A-208ENST00000543633 ZKSCAN1P17029 563 aaPredicted RBP16.4■□□□□ 0.22
VPS33A-208ENST00000543633 OS9Q13438 667 aaPredicted RBP16.4■□□□□ 0.22
VPS33A-208ENST00000543633 NECTIN1Q15223 517 aa16.4■□□□□ 0.22
VPS33A-208ENST00000543633 ABTB2Q8N961 1025 aa16.4■□□□□ 0.22
VPS33A-208ENST00000543633 JAKMIP1Q96N16 626 aaKnown RBP16.4■□□□□ 0.22
VPS33A-208ENST00000543633 ORAI2Q96SN7 254 aa16.4■□□□□ 0.22
VPS33A-208ENST00000543633 FAM13BQ9NYF5 915 aa16.4■□□□□ 0.22
VPS33A-208ENST00000543633 PDCP20941 246 aa16.39■□□□□ 0.21
VPS33A-208ENST00000543633 ZNF335Q9H4Z2 1342 aaPredicted RBP16.39■□□□□ 0.21
VPS33A-208ENST00000543633 JCADQ9P266 1359 aa16.39■□□□□ 0.21
VPS33A-208ENST00000543633 HEG1Q9ULI3 1381 aa16.39■□□□□ 0.21
VPS33A-208ENST00000543633 FIBPO43427 364 aa16.38■□□□□ 0.21
VPS33A-208ENST00000543633 LARGE1O95461 756 aa16.38■□□□□ 0.21
VPS33A-208ENST00000543633 PSMA5P28066 241 aa16.38■□□□□ 0.21
VPS33A-208ENST00000543633 NOLC1Q14978 699 aaKnown RBP eCLIP16.38■□□□□ 0.21
VPS33A-208ENST00000543633 FOXD4L6Q3SYB3 417 aaPredicted RBP16.38■□□□□ 0.21
VPS33A-208ENST00000543633 FOXD4L3Q6VB84 417 aaPredicted RBP16.38■□□□□ 0.21
VPS33A-208ENST00000543633 SPG7Q9UQ90 795 aa16.38■□□□□ 0.21
VPS33A-208ENST00000543633 UTYO14607 1347 aa16.38■□□□□ 0.21
VPS33A-208ENST00000543633 MST1RQ04912 1400 aa16.38■□□□□ 0.21
VPS33A-208ENST00000543633 RGPD2P0DJD1 1756 aa16.38■□□□□ 0.21
VPS33A-208ENST00000543633 IFIT2P09913 472 aaKnown RBP16.38■□□□□ 0.21
VPS33A-208ENST00000543633 EIF2S2P20042 333 aaKnown RBP16.38■□□□□ 0.21
VPS33A-208ENST00000543633 RBM10P98175 930 aaKnown RBP16.38■□□□□ 0.21
VPS33A-208ENST00000543633 ANKRD1Q15327 319 aa16.38■□□□□ 0.21
VPS33A-208ENST00000543633 CCDC83Q8IWF9 413 aa16.38■□□□□ 0.21
VPS33A-208ENST00000543633 ZMYND15Q9H091 742 aa16.38■□□□□ 0.21
VPS33A-208ENST00000543633 GOLGA6L6A8MZA4 724 aa16.37■□□□□ 0.21
VPS33A-208ENST00000543633 CCDC192P0DO97 292 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms