RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 SRGNP10124 158 aa24.01■■□□□ 1.43
CLSTN3-214ENST00000542663 STYK1Q6J9G0 422 aa24.01■■□□□ 1.43
CLSTN3-214ENST00000542663 PRPF40BQ6NWY9 871 aaKnown RBP24.01■■□□□ 1.43
CLSTN3-214ENST00000542663 DDNO94850 711 aaPredicted RBP24■■□□□ 1.43
CLSTN3-214ENST00000542663 CCER1Q8TC90 406 aaPredicted RBP24■■□□□ 1.43
CLSTN3-214ENST00000542663 CNKSR1Q969H4 720 aa24■■□□□ 1.43
CLSTN3-214ENST00000542663 CHADLQ6NUI6 762 aa23.99■■□□□ 1.43
CLSTN3-214ENST00000542663 PHACTR3Q96KR7 559 aa23.99■■□□□ 1.43
CLSTN3-214ENST00000542663 ADAMTSL1Q8N6G6 1762 aa23.98■■□□□ 1.43
CLSTN3-214ENST00000542663 PIP4K2AP48426 406 aaPredicted RBP23.98■■□□□ 1.43
CLSTN3-214ENST00000542663 ST5P78524 1137 aa23.98■■□□□ 1.43
CLSTN3-214ENST00000542663 DZIP3Q86Y13 1208 aaKnown RBP23.98■■□□□ 1.43
CLSTN3-214ENST00000542663 MASTLQ96GX5 879 aa23.98■■□□□ 1.43
CLSTN3-214ENST00000542663 USP16Q9Y5T5 823 aa23.98■■□□□ 1.43
CLSTN3-214ENST00000542663 LAMB4A4D0S4 1761 aa23.98■■□□□ 1.43
CLSTN3-214ENST00000542663 PRAMEF22A3QJZ6 481 aa23.97■■□□□ 1.43
CLSTN3-214ENST00000542663 BTBD11A6QL63 1104 aa23.97■■□□□ 1.43
CLSTN3-214ENST00000542663 CNGB1Q14028 1251 aaPredicted RBP23.97■■□□□ 1.43
CLSTN3-214ENST00000542663 CREBZFQ9NS37 354 aa23.97■■□□□ 1.43
CLSTN3-214ENST00000542663 DLG5Q8TDM6 1919 aa23.96■■□□□ 1.43
CLSTN3-214ENST00000542663 C7orf43Q8WVR3 580 aa23.96■■□□□ 1.43
CLSTN3-214ENST00000542663 NUP98P52948 1817 aa23.96■■□□□ 1.43
CLSTN3-214ENST00000542663 NPHP1O15259 732 aa23.95■■□□□ 1.42
CLSTN3-214ENST00000542663 SOGA3Q5TF21 947 aa23.95■■□□□ 1.42
CLSTN3-214ENST00000542663 NPM2Q86SE8 214 aaKnown RBP23.95■■□□□ 1.42
CLSTN3-214ENST00000542663 RSPH6AQ9H0K4 717 aa23.95■■□□□ 1.42
CLSTN3-214ENST00000542663 PRKAR2BP31323 418 aa23.94■■□□□ 1.42
CLSTN3-214ENST00000542663 MKRN1Q9UHC7 482 aaKnown RBP23.94■■□□□ 1.42
CLSTN3-214ENST00000542663 PASKQ96RG2 1323 aa23.93■■□□□ 1.42
CLSTN3-214ENST00000542663 CLEC4GQ6UXB4 293 aa23.93■■□□□ 1.42
CLSTN3-214ENST00000542663 NBPF5PQ86XG9 351 aaPredicted RBP23.92■■□□□ 1.42
CLSTN3-214ENST00000542663 L3MBTL3Q96JM7 780 aaPredicted RBP23.92■■□□□ 1.42
CLSTN3-214ENST00000542663 KLRG2A4D1S0 409 aaPredicted RBP23.91■■□□□ 1.42
CLSTN3-214ENST00000542663 KDM3BQ7LBC6 1761 aa23.91■■□□□ 1.42
CLSTN3-214ENST00000542663 CNTNAP1P78357 1384 aa23.91■■□□□ 1.42
CLSTN3-214ENST00000542663 CCDC93Q567U6 631 aa23.9■■□□□ 1.42
CLSTN3-214ENST00000542663 TAF1DQ9H5J8 278 aaPredicted RBP23.9■■□□□ 1.42
CLSTN3-214ENST00000542663 IQCA1LA6NCM1 817 aa23.89■■□□□ 1.41
CLSTN3-214ENST00000542663 NBPF26B4DH59 902 aa23.89■■□□□ 1.41
CLSTN3-214ENST00000542663 NPR1P16066 1061 aa23.89■■□□□ 1.41
CLSTN3-214ENST00000542663 NBPF10Q6P3W6 841 aaKnown RBP23.89■■□□□ 1.41
CLSTN3-214ENST00000542663 OLFM4Q6UX06 510 aa23.89■■□□□ 1.41
CLSTN3-214ENST00000542663 LDHDQ86WU2 507 aa23.89■■□□□ 1.41
CLSTN3-214ENST00000542663 NBPF15Q8N660 670 aa23.89■■□□□ 1.41
CLSTN3-214ENST00000542663 ZNF541Q9H0D2 1346 aa23.88■■□□□ 1.41
CLSTN3-214ENST00000542663 SNRPA1P09661 255 aaKnown RBP23.88■■□□□ 1.41
CLSTN3-214ENST00000542663 MCM10Q7L590 875 aa23.88■■□□□ 1.41
CLSTN3-214ENST00000542663 ZNF652Q9Y2D9 606 aa23.88■■□□□ 1.41
CLSTN3-214ENST00000542663 FKBP4Q02790 459 aaKnown RBP eCLIP23.87■■□□□ 1.41
CLSTN3-214ENST00000542663 SNED1Q8TER0 1413 aa23.86■■□□□ 1.41
CLSTN3-214ENST00000542663 ITGBL1O95965 494 aaPredicted RBP23.86■■□□□ 1.41
CLSTN3-214ENST00000542663 ZNF277Q9NRM2 450 aaPredicted RBP23.86■■□□□ 1.41
CLSTN3-214ENST00000542663 NIP7Q9Y221 180 aaKnown RBP eCLIP23.86■■□□□ 1.41
CLSTN3-214ENST00000542663 FOXN1O15353 648 aa23.85■■□□□ 1.41
CLSTN3-214ENST00000542663 TPTE2Q6XPS3 522 aa23.85■■□□□ 1.41
CLSTN3-214ENST00000542663 LTBP1Q14766 1721 aa23.84■■□□□ 1.41
CLSTN3-214ENST00000542663 RGL2O15211 777 aa23.84■■□□□ 1.41
CLSTN3-214ENST00000542663 DCTN1Q14203 1278 aa23.84■■□□□ 1.41
CLSTN3-214ENST00000542663 CFAP53Q96M91 514 aa23.84■■□□□ 1.41
CLSTN3-214ENST00000542663 COL4A5P29400 1685 aa23.83■■□□□ 1.41
CLSTN3-214ENST00000542663 HLFQ16534 295 aa23.83■■□□□ 1.41
CLSTN3-214ENST00000542663 FAM177BA6PVY3 158 aa23.82■■□□□ 1.4
CLSTN3-214ENST00000542663 RTF1Q92541 710 aaKnown RBP23.82■■□□□ 1.4
CLSTN3-214ENST00000542663 HACL1Q9UJ83 578 aa23.82■■□□□ 1.4
CLSTN3-214ENST00000542663 TRPM7Q96QT4 1865 aa23.81■■□□□ 1.4
CLSTN3-214ENST00000542663 TMEM88BA6NKF7 163 aa23.81■■□□□ 1.4
CLSTN3-214ENST00000542663 VEGFBP49765 207 aa23.81■■□□□ 1.4
CLSTN3-214ENST00000542663 EAPPQ56P03 285 aaPredicted RBP23.81■■□□□ 1.4
CLSTN3-214ENST00000542663 RTKN2Q8IZC4 609 aa23.81■■□□□ 1.4
CLSTN3-214ENST00000542663 FZD9O00144 591 aa23.8■■□□□ 1.4
CLSTN3-214ENST00000542663 U2AF1L5P0DN76 240 aaPredicted RBP23.8■■□□□ 1.4
CLSTN3-214ENST00000542663 IARSP41252 1262 aaKnown RBP23.8■■□□□ 1.4
CLSTN3-214ENST00000542663 U2AF1Q01081 240 aaKnown RBP eCLIP23.8■■□□□ 1.4
CLSTN3-214ENST00000542663 NUDCQ9Y266 331 aa23.8■■□□□ 1.4
CLSTN3-214ENST00000542663 RNF123Q5XPI4 1314 aa23.8■■□□□ 1.4
CLSTN3-214ENST00000542663 ABCC12Q96J65 1359 aa23.79■■□□□ 1.4
CLSTN3-214ENST00000542663 EPHX2P34913 555 aa23.79■■□□□ 1.4
CLSTN3-214ENST00000542663 SYNE4Q8N205 404 aa23.79■■□□□ 1.4
CLSTN3-214ENST00000542663 HTATSF1O43719 755 aaKnown RBP23.78■■□□□ 1.4
CLSTN3-214ENST00000542663 PPP2R1AP30153 589 aa23.78■■□□□ 1.4
CLSTN3-214ENST00000542663 ALDH1B1P30837 517 aa23.78■■□□□ 1.4
CLSTN3-214ENST00000542663 PRDM10Q9NQV6 1147 aa23.78■■□□□ 1.4
CLSTN3-214ENST00000542663 THSD7BQ9C0I4 1608 aa23.77■■□□□ 1.4
CLSTN3-214ENST00000542663 CRY2Q49AN0 593 aa23.77■■□□□ 1.4
CLSTN3-214ENST00000542663 MIS18AQ9NYP9 233 aa23.77■■□□□ 1.4
CLSTN3-214ENST00000542663 CLEC11AQ9Y240 323 aa23.77■■□□□ 1.4
CLSTN3-214ENST00000542663 TAF7Q15545 349 aaPredicted RBP23.76■■□□□ 1.39
CLSTN3-214ENST00000542663 MAP1SQ66K74 1059 aaPredicted RBP23.76■■□□□ 1.39
CLSTN3-214ENST00000542663 LAMB2P55268 1798 aa23.75■■□□□ 1.39
CLSTN3-214ENST00000542663 PNMA8AQ86V59 439 aaPredicted RBP23.75■■□□□ 1.39
CLSTN3-214ENST00000542663 CNTROBQ8N137 903 aa23.75■■□□□ 1.39
CLSTN3-214ENST00000542663 GPC2Q8N158 579 aa23.75■■□□□ 1.39
CLSTN3-214ENST00000542663 PSMD1Q99460 953 aa23.75■■□□□ 1.39
CLSTN3-214ENST00000542663 WBP1LQ9NX94 342 aa23.75■■□□□ 1.39
CLSTN3-214ENST00000542663 RASSF10A6NK89 507 aa23.74■■□□□ 1.39
CLSTN3-214ENST00000542663 CTCFP49711 727 aaPredicted RBP23.74■■□□□ 1.39
CLSTN3-214ENST00000542663 NUTM1Q86Y26 1132 aa23.74■■□□□ 1.39
CLSTN3-214ENST00000542663 RIC1Q4ADV7 1423 aa23.74■■□□□ 1.39
CLSTN3-214ENST00000542663 GTF2E1P29083 439 aaPredicted RBP23.73■■□□□ 1.39
CLSTN3-214ENST00000542663 SLC51AQ86UW1 340 aa23.72■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms