RNA–Protein interactions for RNA: ENST00000542570.5

TOP3A-208, Transcript of DNA topoisomerase III alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TOP3A, Length 4,116 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-208ENST00000542570 VPS53Q5VIR6 699 aa12.17□□□□□ -0.46
TOP3A-208ENST00000542570 MINDY4BA8MYZ0 360 aa12.17□□□□□ -0.46
TOP3A-208ENST00000542570 RABEP1Q15276 862 aa12.17□□□□□ -0.46
TOP3A-208ENST00000542570 SUCLG2Q96I99 432 aa12.17□□□□□ -0.46
TOP3A-208ENST00000542570 AK7Q96M32 723 aa12.17□□□□□ -0.46
TOP3A-208ENST00000542570 RNF123Q5XPI4 1314 aa12.16□□□□□ -0.46
TOP3A-208ENST00000542570 SF3B2Q13435 895 aaKnown RBP12.16□□□□□ -0.46
TOP3A-208ENST00000542570 GSE1Q14687 1217 aa12.16□□□□□ -0.46
TOP3A-208ENST00000542570 BMP2KLQ5H9B9 411 aa12.16□□□□□ -0.46
TOP3A-208ENST00000542570 GLI2P10070 1586 aa12.16□□□□□ -0.46
TOP3A-208ENST00000542570 ANKRD18BA2A2Z9 1011 aa12.16□□□□□ -0.46
TOP3A-208ENST00000542570 TFCP2Q12800 502 aa12.16□□□□□ -0.46
TOP3A-208ENST00000542570 CYP46A1Q9Y6A2 500 aa12.16□□□□□ -0.46
TOP3A-208ENST00000542570 CLTCQ00610 1675 aaKnown RBP12.16□□□□□ -0.46
TOP3A-208ENST00000542570 PCDH11XQ9BZA7 1347 aa12.16□□□□□ -0.46
TOP3A-208ENST00000542570 PCDH11YQ9BZA8 1340 aa12.16□□□□□ -0.46
TOP3A-208ENST00000542570 INO80Q9ULG1 1556 aaPredicted RBP12.16□□□□□ -0.46
TOP3A-208ENST00000542570 K7ELQ4 463 aaPredicted RBP12.16□□□□□ -0.46
TOP3A-208ENST00000542570 AKAP17AQ02040 695 aaKnown RBP12.16□□□□□ -0.46
TOP3A-208ENST00000542570 NBPF5PQ86XG9 351 aaPredicted RBP12.16□□□□□ -0.46
TOP3A-208ENST00000542570 GNPATO15228 680 aa12.15□□□□□ -0.46
TOP3A-208ENST00000542570 CYP27B1O15528 508 aa12.15□□□□□ -0.46
TOP3A-208ENST00000542570 RAB11FIP3O75154 756 aa12.15□□□□□ -0.46
TOP3A-208ENST00000542570 BLOC1S2Q6QNY1 142 aa12.15□□□□□ -0.46
TOP3A-208ENST00000542570 CCDC83Q8IWF9 413 aa12.15□□□□□ -0.46
TOP3A-208ENST00000542570 USP21Q9UK80 565 aa12.15□□□□□ -0.46
TOP3A-208ENST00000542570 FAM135BQ49AJ0 1406 aa12.15□□□□□ -0.46
TOP3A-208ENST00000542570 RBM5P52756 815 aaKnown RBP eCLIP12.15□□□□□ -0.46
TOP3A-208ENST00000542570 NUP133Q8WUM0 1156 aa12.15□□□□□ -0.46
TOP3A-208ENST00000542570 GDPD2Q9HCC8 539 aa12.15□□□□□ -0.46
TOP3A-208ENST00000542570 GUCY1B3Q02153 619 aa12.14□□□□□ -0.47
TOP3A-208ENST00000542570 ADGRB3O60242 1522 aa12.14□□□□□ -0.47
TOP3A-208ENST00000542570 C6orf229H3BNL8 230 aa12.14□□□□□ -0.47
TOP3A-208ENST00000542570 BICD2Q8TD16 824 aa12.14□□□□□ -0.47
TOP3A-208ENST00000542570 CHST3Q7LGC8 479 aa12.14□□□□□ -0.47
TOP3A-208ENST00000542570 IRS4O14654 1257 aaPredicted RBP12.13□□□□□ -0.47
TOP3A-208ENST00000542570 TDO2P48775 406 aa12.13□□□□□ -0.47
TOP3A-208ENST00000542570 NCBP3Q53F19 620 aaKnown RBP12.13□□□□□ -0.47
TOP3A-208ENST00000542570 CAVIN1Q6NZI2 390 aaKnown RBP12.13□□□□□ -0.47
TOP3A-208ENST00000542570 ZNF652Q9Y2D9 606 aa12.13□□□□□ -0.47
TOP3A-208ENST00000542570 PDRG1Q9NUG6 133 aa12.13□□□□□ -0.47
TOP3A-208ENST00000542570 TULP4Q9NRJ4 1543 aa12.13□□□□□ -0.47
TOP3A-208ENST00000542570 TAF5LO75529 589 aa12.13□□□□□ -0.47
TOP3A-208ENST00000542570 ADAMTS13Q76LX8 1427 aa12.13□□□□□ -0.47
TOP3A-208ENST00000542570 PTPRUQ92729 1446 aa12.13□□□□□ -0.47
TOP3A-208ENST00000542570 KDM2BQ8NHM5 1336 aa12.13□□□□□ -0.47
TOP3A-208ENST00000542570 CCT2P78371 535 aaKnown RBP12.13□□□□□ -0.47
TOP3A-208ENST00000542570 AIDAQ96BJ3 306 aa12.13□□□□□ -0.47
TOP3A-208ENST00000542570 TRAK2O60296 914 aa12.12□□□□□ -0.47
TOP3A-208ENST00000542570 CPLX2Q6PUV4 134 aaKnown RBP12.12□□□□□ -0.47
TOP3A-208ENST00000542570 CCDC144CPQ8IYA2 1237 aa12.12□□□□□ -0.47
TOP3A-208ENST00000542570 DBNDD2Q9BQY9 259 aa12.12□□□□□ -0.47
TOP3A-208ENST00000542570 TEX13AQ9BXU3 409 aaPredicted RBP12.12□□□□□ -0.47
TOP3A-208ENST00000542570 DIP2BQ9P265 1576 aa12.12□□□□□ -0.47
TOP3A-208ENST00000542570 ERICH2A1L162 156 aa12.12□□□□□ -0.47
TOP3A-208ENST00000542570 NECAB1Q8N987 351 aa12.12□□□□□ -0.47
TOP3A-208ENST00000542570 TBC1D32Q96NH3 1257 aa12.12□□□□□ -0.47
TOP3A-208ENST00000542570 ADGRL3Q9HAR2 1447 aa12.12□□□□□ -0.47
TOP3A-208ENST00000542570 ALDH1L1O75891 902 aa12.12□□□□□ -0.47
TOP3A-208ENST00000542570 AATKQ6ZMQ8 1374 aa12.12□□□□□ -0.47
TOP3A-208ENST00000542570 DDX11L8A8MPP1 907 aa12.11□□□□□ -0.47
TOP3A-208ENST00000542570 PSMA5P28066 241 aa12.11□□□□□ -0.47
TOP3A-208ENST00000542570 ZNF622Q969S3 477 aaKnown RBP eCLIP12.11□□□□□ -0.47
TOP3A-208ENST00000542570 SYNMO15061 1565 aa12.11□□□□□ -0.47
TOP3A-208ENST00000542570 F8W031 263 aaPredicted RBP12.11□□□□□ -0.47
TOP3A-208ENST00000542570 CCDC129Q6ZRS4 1044 aa12.11□□□□□ -0.47
TOP3A-208ENST00000542570 SETDB2Q96T68 719 aa12.11□□□□□ -0.47
TOP3A-208ENST00000542570 TFCP2L1Q9NZI6 479 aa12.11□□□□□ -0.47
TOP3A-208ENST00000542570 MARCH6O60337 910 aa12.11□□□□□ -0.47
TOP3A-208ENST00000542570 SSFA2P28290 1259 aa12.11□□□□□ -0.47
TOP3A-208ENST00000542570 GCKRQ14397 625 aa12.11□□□□□ -0.47
TOP3A-208ENST00000542570 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.11□□□□□ -0.471e-6■■■■□ 21.2
TOP3A-208ENST00000542570 GNL3LQ9NVN8 582 aaKnown RBP12.11□□□□□ -0.47
TOP3A-208ENST00000542570 ARHGEF10O15013 1369 aa12.11□□□□□ -0.47
TOP3A-208ENST00000542570 ZNF853P0CG23 659 aa12.1□□□□□ -0.47
TOP3A-208ENST00000542570 SIRT2Q8IXJ6 389 aa12.1□□□□□ -0.47
TOP3A-208ENST00000542570 METTL22Q9BUU2 404 aaPredicted RBP12.1□□□□□ -0.47
TOP3A-208ENST00000542570 TRIM34Q9BYJ4 488 aa12.1□□□□□ -0.47
TOP3A-208ENST00000542570 PTPRMP28827 1452 aa12.1□□□□□ -0.47
TOP3A-208ENST00000542570 ATP7BP35670 1465 aa12.1□□□□□ -0.47
TOP3A-208ENST00000542570 SPATA31A3Q5VYP0 1347 aa12.1□□□□□ -0.47
TOP3A-208ENST00000542570 NUCB2P80303 420 aa12.1□□□□□ -0.47
TOP3A-208ENST00000542570 LARP1BQ659C4 914 aaKnown RBP12.1□□□□□ -0.47
TOP3A-208ENST00000542570 SYNE4Q8N205 404 aa12.1□□□□□ -0.47
TOP3A-208ENST00000542570 FRMPD1Q5SYB0 1578 aa12.1□□□□□ -0.47
TOP3A-208ENST00000542570 SOS1Q07889 1333 aaPredicted RBP12.1□□□□□ -0.47
TOP3A-208ENST00000542570 ATP2B3Q16720 1220 aa12.1□□□□□ -0.47
TOP3A-208ENST00000542570 CCNL1Q9UK58 526 aaPredicted RBP12.1□□□□□ -0.47
TOP3A-208ENST00000542570 ZBTB1Q9Y2K1 713 aa12.1□□□□□ -0.47
TOP3A-208ENST00000542570 ZSCAN29Q8IWY8 852 aaPredicted RBP12.09□□□□□ -0.47
TOP3A-208ENST00000542570 NAP1L5Q96NT1 182 aaPredicted RBP12.09□□□□□ -0.47
TOP3A-208ENST00000542570 CAMSAP1Q5T5Y3 1602 aa12.09□□□□□ -0.47
TOP3A-208ENST00000542570 HIP1O00291 1037 aa12.09□□□□□ -0.47
TOP3A-208ENST00000542570 TRIM29Q14134 588 aa12.09□□□□□ -0.47
TOP3A-208ENST00000542570 AMOTL1Q8IY63 956 aa12.09□□□□□ -0.47
TOP3A-208ENST00000542570 NSFL1CQ9UNZ2 370 aaKnown RBP12.09□□□□□ -0.47
TOP3A-208ENST00000542570 KIF3AQ9Y496 699 aa12.09□□□□□ -0.47
TOP3A-208ENST00000542570 AKAP2Q9Y2D5 859 aa12.09□□□□□ -0.47
TOP3A-208ENST00000542570 NEXMIFQ5QGS0 1516 aa12.09□□□□□ -0.47
TOP3A-208ENST00000542570 CLSTN1O94985 981 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms