RNA–Protein interactions for RNA: ENST00000542002.5

YBX3-212, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-212ENST00000542002 DPEP1P16444 411 aa12.68□□□□□ -0.38
YBX3-212ENST00000542002 GPR162Q16538 588 aa12.68□□□□□ -0.38
YBX3-212ENST00000542002 DIEXFQ68CQ4 756 aaKnown RBP12.68□□□□□ -0.38
YBX3-212ENST00000542002 CCDC24Q8N4L8 307 aa12.68□□□□□ -0.38
YBX3-212ENST00000542002 TSPYL6Q8N831 410 aa12.68□□□□□ -0.38
YBX3-212ENST00000542002 TGFB2P61812 414 aa12.67□□□□□ -0.38
YBX3-212ENST00000542002 CALD1Q05682 793 aaKnown RBP12.67□□□□□ -0.38
YBX3-212ENST00000542002 CLEC4GQ6UXB4 293 aa12.67□□□□□ -0.38
YBX3-212ENST00000542002 NPM2Q86SE8 214 aaKnown RBP12.67□□□□□ -0.38
YBX3-212ENST00000542002 PELP1Q8IZL8 1130 aaKnown RBP12.67□□□□□ -0.38
YBX3-212ENST00000542002 C10orf71Q711Q0 1435 aa12.67□□□□□ -0.38
YBX3-212ENST00000542002 CCER2I3L3R5 266 aa12.66□□□□□ -0.38
YBX3-212ENST00000542002 CHRNA5P30532 468 aa12.66□□□□□ -0.38
YBX3-212ENST00000542002 SETDB2Q96T68 719 aa12.66□□□□□ -0.38
YBX3-212ENST00000542002 ZBTB3Q9H5J0 574 aa12.66□□□□□ -0.38
YBX3-212ENST00000542002 CHPF2Q9P2E5 772 aa12.66□□□□□ -0.38
YBX3-212ENST00000542002 PXDNLA1KZ92 1463 aa12.65□□□□□ -0.38
YBX3-212ENST00000542002 ERBB4Q15303 1308 aa12.65□□□□□ -0.38
YBX3-212ENST00000542002 MAP3K15Q6ZN16 1313 aa12.65□□□□□ -0.38
YBX3-212ENST00000542002 ERVV-1B6SEH8 477 aa12.65□□□□□ -0.38
YBX3-212ENST00000542002 HDGFL1Q5TGJ6 251 aa12.65□□□□□ -0.38
YBX3-212ENST00000542002 PRR5LQ6MZQ0 368 aa12.65□□□□□ -0.38
YBX3-212ENST00000542002 COPS6Q7L5N1 327 aa12.65□□□□□ -0.38
YBX3-212ENST00000542002 WDR63Q8IWG1 891 aa12.65□□□□□ -0.38
YBX3-212ENST00000542002 XAGE3Q8WTP9 111 aa12.65□□□□□ -0.38
YBX3-212ENST00000542002 DDX21Q9NR30 783 aaKnown RBP eCLIP12.65□□□□□ -0.38
YBX3-212ENST00000542002 CARMIL3Q8ND23 1372 aa12.65□□□□□ -0.38
YBX3-212ENST00000542002 IL16Q14005 1332 aa12.64□□□□□ -0.39
YBX3-212ENST00000542002 HOXB7P09629 217 aa12.64□□□□□ -0.39
YBX3-212ENST00000542002 AIMP1Q12904 312 aaKnown RBP12.64□□□□□ -0.39
YBX3-212ENST00000542002 NIP7Q9Y221 180 aaKnown RBP eCLIP12.64□□□□□ -0.39
YBX3-212ENST00000542002 ZNF521Q96K83 1311 aa12.63□□□□□ -0.39
YBX3-212ENST00000542002 RGL2O15211 777 aa12.63□□□□□ -0.39
YBX3-212ENST00000542002 ZNF34Q8IZ26 560 aa12.63□□□□□ -0.39
YBX3-212ENST00000542002 FAM177BA6PVY3 158 aa12.62□□□□□ -0.39
YBX3-212ENST00000542002 TCERG1O14776 1098 aaKnown RBP12.62□□□□□ -0.39
YBX3-212ENST00000542002 GPTP24298 496 aa12.62□□□□□ -0.39
YBX3-212ENST00000542002 GIGYF2Q6Y7W6 1299 aaKnown RBP12.62□□□□□ -0.39
YBX3-212ENST00000542002 KIF6Q6ZMV9 814 aa12.62□□□□□ -0.39
YBX3-212ENST00000542002 PHAXQ9H814 394 aaKnown RBP12.62□□□□□ -0.39
YBX3-212ENST00000542002 ZNF652Q9Y2D9 606 aa12.62□□□□□ -0.39
YBX3-212ENST00000542002 UBN2Q6ZU65 1347 aa12.62□□□□□ -0.39
YBX3-212ENST00000542002 FANCIQ9NVI1 1328 aa12.62□□□□□ -0.39
YBX3-212ENST00000542002 LAMB4A4D0S4 1761 aa12.61□□□□□ -0.39
YBX3-212ENST00000542002 SUSD4Q5VX71 490 aa12.61□□□□□ -0.39
YBX3-212ENST00000542002 NBPF5PQ86XG9 351 aaPredicted RBP12.61□□□□□ -0.39
YBX3-212ENST00000542002 BRIP1Q9BX63 1249 aa12.61□□□□□ -0.39
YBX3-212ENST00000542002 DBF4Q9UBU7 674 aaPredicted RBP12.61□□□□□ -0.39
YBX3-212ENST00000542002 KIAA1551Q9HCM1 1747 aa12.61□□□□□ -0.39
YBX3-212ENST00000542002 SCN7AQ01118 1682 aa12.61□□□□□ -0.39
YBX3-212ENST00000542002 KIF13BQ9NQT8 1826 aa12.6□□□□□ -0.39
YBX3-212ENST00000542002 NRXN2Q9P2S2 1712 aa12.6□□□□□ -0.39
YBX3-212ENST00000542002 VAMP4O75379 141 aa12.6□□□□□ -0.39
YBX3-212ENST00000542002 NUTM1Q86Y26 1132 aa12.6□□□□□ -0.39
YBX3-212ENST00000542002 C2CD5Q86YS7 1000 aa12.6□□□□□ -0.39
YBX3-212ENST00000542002 CNBD1Q8NA66 436 aa12.6□□□□□ -0.39
YBX3-212ENST00000542002 ZNF428Q96B54 188 aa12.6□□□□□ -0.39
YBX3-212ENST00000542002 PIM2Q9P1W9 311 aa12.6□□□□□ -0.39
YBX3-212ENST00000542002 BCS1LQ9Y276 419 aa12.6□□□□□ -0.39
YBX3-212ENST00000542002 GRIN3BO60391 1043 aa12.59□□□□□ -0.39
YBX3-212ENST00000542002 EXOSC9Q06265 439 aaKnown RBP12.59□□□□□ -0.39
YBX3-212ENST00000542002 TWISTNBQ3B726 338 aaPredicted RBP12.59□□□□□ -0.39
YBX3-212ENST00000542002 ERFEQ4G0M1 354 aa12.59□□□□□ -0.39
YBX3-212ENST00000542002 TPTE2Q6XPS3 522 aa12.59□□□□□ -0.39
YBX3-212ENST00000542002 ANKRD13DQ6ZTN6 518 aa12.59□□□□□ -0.39
YBX3-212ENST00000542002 HYPKQ9NX55 129 aa12.59□□□□□ -0.39
YBX3-212ENST00000542002 BCORQ6W2J9 1755 aa12.58□□□□□ -0.39
YBX3-212ENST00000542002 N4BP2Q86UW6 1770 aaPredicted RBP12.58□□□□□ -0.39
YBX3-212ENST00000542002 AFDNP55196 1824 aaKnown RBP12.58□□□□□ -0.4
YBX3-212ENST00000542002 KLRG2A4D1S0 409 aaPredicted RBP12.58□□□□□ -0.4
YBX3-212ENST00000542002 YY1P25490 414 aa12.58□□□□□ -0.4
YBX3-212ENST00000542002 TCIRG1Q13488 830 aa12.58□□□□□ -0.4
YBX3-212ENST00000542002 DALRD3Q5D0E6 543 aaKnown RBP12.58□□□□□ -0.4
YBX3-212ENST00000542002 G2E3Q7L622 706 aa12.58□□□□□ -0.4
YBX3-212ENST00000542002 SYNE4Q8N205 404 aa12.58□□□□□ -0.4
YBX3-212ENST00000542002 PLBD2Q8NHP8 589 aa12.58□□□□□ -0.4
YBX3-212ENST00000542002 ATP10DQ9P241 1426 aa12.58□□□□□ -0.4
YBX3-212ENST00000542002 H0YIN7 160 aa12.57□□□□□ -0.4
YBX3-212ENST00000542002 NTSR2O95665 410 aa12.57□□□□□ -0.4
YBX3-212ENST00000542002 SRGNP10124 158 aa12.57□□□□□ -0.4
YBX3-212ENST00000542002 PDE6BP35913 854 aa12.57□□□□□ -0.4
YBX3-212ENST00000542002 GOLGA2Q08379 1002 aa12.57□□□□□ -0.4
YBX3-212ENST00000542002 CCDC30Q5VVM6 783 aa12.57□□□□□ -0.4
YBX3-212ENST00000542002 C3orf67Q6ZVT6 689 aa12.57□□□□□ -0.4
YBX3-212ENST00000542002 NLRP10Q86W26 655 aa12.57□□□□□ -0.4
YBX3-212ENST00000542002 CDCA7LQ96GN5 454 aa12.57□□□□□ -0.4
YBX3-212ENST00000542002 SLC4A2P04920 1241 aa12.56□□□□□ -0.4
YBX3-212ENST00000542002 ST5P78524 1137 aa12.56□□□□□ -0.4
YBX3-212ENST00000542002 ZNF622Q969S3 477 aaKnown RBP eCLIP12.56□□□□□ -0.42e-15■□□□□ 9.4
YBX3-212ENST00000542002 ABCC12Q96J65 1359 aa12.56□□□□□ -0.4
YBX3-212ENST00000542002 ATP5J2-PTCD1G3V325 749 aa12.55□□□□□ -0.4
YBX3-212ENST00000542002 NPHP1O15259 732 aa12.55□□□□□ -0.4
YBX3-212ENST00000542002 SLFN5Q08AF3 891 aa12.55□□□□□ -0.4
YBX3-212ENST00000542002 ARHGAP27Q6ZUM4 889 aa12.55□□□□□ -0.4
YBX3-212ENST00000542002 TTLL6Q8N841 843 aa12.55□□□□□ -0.4
YBX3-212ENST00000542002 ISCA1Q9BUE6 129 aa12.55□□□□□ -0.4
YBX3-212ENST00000542002 MYH16Q9H6N6 1097 aa12.55□□□□□ -0.4
YBX3-212ENST00000542002 GTF2E1P29083 439 aaPredicted RBP12.54□□□□□ -0.4
YBX3-212ENST00000542002 PARP10Q53GL7 1025 aa12.54□□□□□ -0.4
YBX3-212ENST00000542002 SLC10A5Q5PT55 438 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms