RNA–Protein interactions for RNA: ENST00000541764.5

LMO3-227, Transcript of LIM domain only 3, humanhuman

TSL 1 (best)

Gene LMO3, Length 1,489 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-227ENST00000541764 RILPL2Q969X0 211 aa12.03□□□□□ -0.48
LMO3-227ENST00000541764 MRC1P22897 1456 aa12.03□□□□□ -0.48
LMO3-227ENST00000541764 BRD1O95696 1058 aa12.02□□□□□ -0.48
LMO3-227ENST00000541764 DDX58O95786 925 aaKnown RBP12.02□□□□□ -0.48
LMO3-227ENST00000541764 TSHZ3Q63HK5 1081 aa12.02□□□□□ -0.48
LMO3-227ENST00000541764 ZGPATQ8N5A5 531 aaKnown RBP12.02□□□□□ -0.48
LMO3-227ENST00000541764 KCNB2Q92953 911 aa12.02□□□□□ -0.48
LMO3-227ENST00000541764 ANO2Q9NQ90 1003 aa12.02□□□□□ -0.48
LMO3-227ENST00000541764 PALD1Q9ULE6 856 aa12.02□□□□□ -0.48
LMO3-227ENST00000541764 AXIN2Q9Y2T1 843 aa12.02□□□□□ -0.48
LMO3-227ENST00000541764 COL15A1P39059 1388 aa12.02□□□□□ -0.48
LMO3-227ENST00000541764 PROSER2Q86WR7 435 aaPredicted RBP12.02□□□□□ -0.49
LMO3-227ENST00000541764 GAS2L3Q86XJ1 694 aa12.02□□□□□ -0.49
LMO3-227ENST00000541764 IL1RAPL2Q9NP60 686 aa12.02□□□□□ -0.49
LMO3-227ENST00000541764 MAP3K2Q9Y2U5 619 aa12.02□□□□□ -0.49
LMO3-227ENST00000541764 DDX49Q9Y6V7 483 aaKnown RBP12.02□□□□□ -0.49
LMO3-227ENST00000541764 COL18A1P39060 1754 aa12.01□□□□□ -0.49
LMO3-227ENST00000541764 SCN11AQ9UI33 1791 aa12.01□□□□□ -0.49
LMO3-227ENST00000541764 PDIA6Q15084 440 aa12.01□□□□□ -0.49
LMO3-227ENST00000541764 NUTM1Q86Y26 1132 aa12.01□□□□□ -0.49
LMO3-227ENST00000541764 KLHL34Q8N239 644 aa12.01□□□□□ -0.49
LMO3-227ENST00000541764 CLASRPQ8N2M8 674 aaKnown RBP12.01□□□□□ -0.49
LMO3-227ENST00000541764 RBM33Q96EV2 1170 aaKnown RBP12.01□□□□□ -0.49
LMO3-227ENST00000541764 LSG1Q9H089 658 aaKnown RBP12.01□□□□□ -0.49
LMO3-227ENST00000541764 SNRKQ9NRH2 765 aa12.01□□□□□ -0.49
LMO3-227ENST00000541764 RUFY2Q8WXA3 655 aa12□□□□□ -0.49
LMO3-227ENST00000541764 GPATCH3Q96I76 525 aa12□□□□□ -0.49
LMO3-227ENST00000541764 PANK2Q9BZ23 570 aa12□□□□□ -0.49
LMO3-227ENST00000541764 SLC52A2Q9HAB3 445 aa12□□□□□ -0.49
LMO3-227ENST00000541764 ECHDC1Q9NTX5 307 aa12□□□□□ -0.49
LMO3-227ENST00000541764 C9orf78Q9NZ63 289 aaPredicted RBP12□□□□□ -0.49
LMO3-227ENST00000541764 KDM6AO15550 1401 aaPredicted RBP12□□□□□ -0.49
LMO3-227ENST00000541764 NPHP3Q7Z494 1330 aa11.99□□□□□ -0.49
LMO3-227ENST00000541764 GRM8O00222 908 aa11.99□□□□□ -0.49
LMO3-227ENST00000541764 MBD3O95983 291 aa11.99□□□□□ -0.49
LMO3-227ENST00000541764 PKP1Q13835 747 aa11.99□□□□□ -0.49
LMO3-227ENST00000541764 PROSER3Q2NL68 480 aa11.99□□□□□ -0.49
LMO3-227ENST00000541764 MCTP1Q6DN14 999 aa11.99□□□□□ -0.49
LMO3-227ENST00000541764 ZNF790Q6PG37 636 aa11.99□□□□□ -0.49
LMO3-227ENST00000541764 LARP1Q6PKG0 1096 aaKnown RBP11.99□□□□□ -0.49
LMO3-227ENST00000541764 TTC14Q96N46 770 aa11.99□□□□□ -0.49
LMO3-227ENST00000541764 PPP1R9BQ96SB3 815 aa11.99□□□□□ -0.49
LMO3-227ENST00000541764 TM6SF1Q9BZW5 370 aa11.99□□□□□ -0.49
LMO3-227ENST00000541764 RTN4Q9NQC3 1192 aaKnown RBP11.99□□□□□ -0.49
LMO3-227ENST00000541764 SPG7Q9UQ90 795 aa11.99□□□□□ -0.49
LMO3-227ENST00000541764 CPDO75976 1380 aa11.98□□□□□ -0.49
LMO3-227ENST00000541764 AK9Q5TCS8 1911 aa11.98□□□□□ -0.49
LMO3-227ENST00000541764 HIP1O00291 1037 aa11.98□□□□□ -0.49
LMO3-227ENST00000541764 PHKG2P15735 406 aa11.98□□□□□ -0.49
LMO3-227ENST00000541764 TATP17735 454 aaPredicted RBP11.98□□□□□ -0.49
LMO3-227ENST00000541764 CLCN6P51797 869 aa11.98□□□□□ -0.49
LMO3-227ENST00000541764 RAPGEF4Q8WZA2 1011 aa11.98□□□□□ -0.49
LMO3-227ENST00000541764 KAZALD1Q96I82 304 aa11.98□□□□□ -0.49
LMO3-227ENST00000541764 IL25Q9H293 177 aa11.98□□□□□ -0.49
LMO3-227ENST00000541764 PKD1L3Q7Z443 1732 aa11.97□□□□□ -0.49
LMO3-227ENST00000541764 ANXA1P04083 346 aa11.97□□□□□ -0.49
LMO3-227ENST00000541764 CLCN1P35523 988 aa11.97□□□□□ -0.49
LMO3-227ENST00000541764 CCDC173Q0VFZ6 552 aa11.97□□□□□ -0.49
LMO3-227ENST00000541764 CHADLQ6NUI6 762 aa11.97□□□□□ -0.49
LMO3-227ENST00000541764 EVI5LQ96CN4 794 aa11.97□□□□□ -0.49
LMO3-227ENST00000541764 SNX14Q9Y5W7 946 aa11.97□□□□□ -0.49
LMO3-227ENST00000541764 ZBTB7CA1YPR0 619 aa11.96□□□□□ -0.49
LMO3-227ENST00000541764 KIAA1211Q6ZU35 1233 aa11.96□□□□□ -0.49
LMO3-227ENST00000541764 LRP10Q7Z4F1 713 aa11.96□□□□□ -0.49
LMO3-227ENST00000541764 IFNL2Q8IZJ0 200 aa11.96□□□□□ -0.49
LMO3-227ENST00000541764 SUCLG2Q96I99 432 aa11.96□□□□□ -0.49
LMO3-227ENST00000541764 DCAF5Q96JK2 942 aa11.96□□□□□ -0.49
LMO3-227ENST00000541764 RRAGDQ9NQL2 400 aaPredicted RBP11.96□□□□□ -0.49
LMO3-227ENST00000541764 PARP4Q9UKK3 1724 aaKnown RBP11.96□□□□□ -0.49
LMO3-227ENST00000541764 RGPD5Q99666 1765 aa11.96□□□□□ -0.5
LMO3-227ENST00000541764 TNS3Q68CZ2 1445 aa11.96□□□□□ -0.5
LMO3-227ENST00000541764 IGKV5-2P06315 115 aa11.95□□□□□ -0.5
LMO3-227ENST00000541764 IFIT2P09913 472 aaKnown RBP11.95□□□□□ -0.5
LMO3-227ENST00000541764 PDIA4P13667 645 aaKnown RBP11.95□□□□□ -0.5
LMO3-227ENST00000541764 XPCQ01831 940 aaPredicted RBP11.95□□□□□ -0.5
LMO3-227ENST00000541764 OS9Q13438 667 aaPredicted RBP11.95□□□□□ -0.5
LMO3-227ENST00000541764 ZSCAN23Q3MJ62 389 aa11.95□□□□□ -0.5
LMO3-227ENST00000541764 TICAM2Q86XR7 235 aa11.95□□□□□ -0.5
LMO3-227ENST00000541764 TMEM87AQ8NBN3 555 aa11.95□□□□□ -0.5
LMO3-227ENST00000541764 METTL22Q9BUU2 404 aaPredicted RBP11.95□□□□□ -0.5
LMO3-227ENST00000541764 ERBB4Q15303 1308 aa11.95□□□□□ -0.5
LMO3-227ENST00000541764 WDR33Q9C0J8 1336 aaKnown RBP11.95□□□□□ -0.5
LMO3-227ENST00000541764 MEGF6O75095 1541 aa11.95□□□□□ -0.5
LMO3-227ENST00000541764 NEURL1BA8MQ27 555 aa11.95□□□□□ -0.5
LMO3-227ENST00000541764 SASH1O94885 1247 aa11.95□□□□□ -0.5
LMO3-227ENST00000541764 SNRPA1P09661 255 aaKnown RBP11.95□□□□□ -0.5
LMO3-227ENST00000541764 ATF3P18847 181 aa11.95□□□□□ -0.5
LMO3-227ENST00000541764 NEXNQ0ZGT2 675 aa11.95□□□□□ -0.5
LMO3-227ENST00000541764 G3BP1Q13283 466 aaKnown RBP eCLIP11.95□□□□□ -0.5
LMO3-227ENST00000541764 CWF19L2Q2TBE0 894 aaKnown RBP11.95□□□□□ -0.5
LMO3-227ENST00000541764 GPT2Q8TD30 523 aa11.95□□□□□ -0.5
LMO3-227ENST00000541764 LIMCH1Q9UPQ0 1083 aa11.95□□□□□ -0.5
LMO3-227ENST00000541764 TMEM94Q12767 1356 aa11.94□□□□□ -0.5
LMO3-227ENST00000541764 RFX7Q2KHR2 1363 aa11.94□□□□□ -0.5
LMO3-227ENST00000541764 C5P01031 1676 aa11.94□□□□□ -0.5
LMO3-227ENST00000541764 PRAMEF22A3QJZ6 481 aa11.94□□□□□ -0.5
LMO3-227ENST00000541764 PRPF40AO75400 957 aaKnown RBP11.94□□□□□ -0.5
LMO3-227ENST00000541764 NASPP49321 788 aaPredicted RBP11.94□□□□□ -0.5
LMO3-227ENST00000541764 GCKRQ14397 625 aa11.94□□□□□ -0.5
LMO3-227ENST00000541764 HS1BP3Q53T59 392 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms