RNA–Protein interactions for RNA: ENST00000540865.5

SNHG1-214, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 5

Gene SNHG1, Length 784 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-214ENST00000540865 TNS2Q63HR2 1409 aa6.72□□□□□ -1.33
SNHG1-214ENST00000540865 PNPLA7Q6ZV29 1317 aa6.72□□□□□ -1.33
SNHG1-214ENST00000540865 SLIT3O75094 1523 aa6.71□□□□□ -1.33
SNHG1-214ENST00000540865 CPSF1Q10570 1443 aaKnown RBP6.71□□□□□ -1.34
SNHG1-214ENST00000540865 PPIP5K1Q6PFW1 1433 aa6.71□□□□□ -1.34
SNHG1-214ENST00000540865 APLP1P51693 650 aa6.71□□□□□ -1.34
SNHG1-214ENST00000540865 SRPK2P78362 688 aaKnown RBP6.71□□□□□ -1.34
SNHG1-214ENST00000540865 GIGYF2Q6Y7W6 1299 aaKnown RBP6.71□□□□□ -1.34
SNHG1-214ENST00000540865 TMEM134Q9H6X4 195 aa6.71□□□□□ -1.34
SNHG1-214ENST00000540865 TFCP2L1Q9NZI6 479 aa6.71□□□□□ -1.34
SNHG1-214ENST00000540865 SBF2Q86WG5 1849 aa6.71□□□□□ -1.34
SNHG1-214ENST00000540865 ADCY9O60503 1353 aa6.7□□□□□ -1.34
SNHG1-214ENST00000540865 ITSN1Q15811 1721 aa6.7□□□□□ -1.34
SNHG1-214ENST00000540865 PAPPAQ13219 1627 aa6.7□□□□□ -1.34
SNHG1-214ENST00000540865 TMUB1Q9BVT8 246 aa6.7□□□□□ -1.34
SNHG1-214ENST00000540865 GPCPD1Q9NPB8 672 aa6.7□□□□□ -1.34
SNHG1-214ENST00000540865 RNF40O75150 1001 aa6.69□□□□□ -1.34
SNHG1-214ENST00000540865 CLCN1P35523 988 aa6.69□□□□□ -1.34
SNHG1-214ENST00000540865 TJAP1Q5JTD0 557 aa6.69□□□□□ -1.34
SNHG1-214ENST00000540865 DNAJC5GQ8N7S2 189 aa6.69□□□□□ -1.34
SNHG1-214ENST00000540865 ZNF526Q8TF50 670 aaPredicted RBP6.69□□□□□ -1.34
SNHG1-214ENST00000540865 KDM4CQ9H3R0 1056 aa6.69□□□□□ -1.34
SNHG1-214ENST00000540865 CABP1Q9NZU7 370 aa6.69□□□□□ -1.34
SNHG1-214ENST00000540865 CD2APQ9Y5K6 639 aa6.69□□□□□ -1.34
SNHG1-214ENST00000540865 TOPAZ1Q8N9V7 1692 aa6.68□□□□□ -1.34
SNHG1-214ENST00000540865 DDX11L8A8MPP1 907 aa6.68□□□□□ -1.34
SNHG1-214ENST00000540865 MS4A1P11836 297 aa6.68□□□□□ -1.34
SNHG1-214ENST00000540865 IL2RBP14784 551 aa6.68□□□□□ -1.34
SNHG1-214ENST00000540865 ZNF787Q6DD87 383 aa6.68□□□□□ -1.34
SNHG1-214ENST00000540865 DAXXQ9UER7 740 aaPredicted RBP6.68□□□□□ -1.34
SNHG1-214ENST00000540865 TTC21BQ7Z4L5 1316 aa6.68□□□□□ -1.34
SNHG1-214ENST00000540865 PCNTO95613 3336 aa6.68□□□□□ -1.34
SNHG1-214ENST00000540865 ABCC6O95255 1503 aa6.67□□□□□ -1.34
SNHG1-214ENST00000540865 SSTR3P32745 418 aaPredicted RBP6.67□□□□□ -1.34
SNHG1-214ENST00000540865 PPP1R18Q6NYC8 613 aa6.67□□□□□ -1.34
SNHG1-214ENST00000540865 MTRQ99707 1265 aa6.67□□□□□ -1.34
SNHG1-214ENST00000540865 FAM217BQ9NTX9 383 aaPredicted RBP6.67□□□□□ -1.34
SNHG1-214ENST00000540865 NLRP2Q9NX02 1062 aa6.67□□□□□ -1.34
SNHG1-214ENST00000540865 TTC21AQ8NDW8 1320 aa6.67□□□□□ -1.34
SNHG1-214ENST00000540865 CENPJQ9HC77 1338 aaPredicted RBP6.67□□□□□ -1.34
SNHG1-214ENST00000540865 NHSQ6T4R5 1651 aa6.67□□□□□ -1.34
SNHG1-214ENST00000540865 ARHGEF28Q8N1W1 1705 aaKnown RBP6.67□□□□□ -1.34
SNHG1-214ENST00000540865 COL18A1P39060 1754 aa6.67□□□□□ -1.34
SNHG1-214ENST00000540865 TOMM70O94826 608 aa6.66□□□□□ -1.34
SNHG1-214ENST00000540865 HMGB2P26583 209 aaKnown RBP6.66□□□□□ -1.34
SNHG1-214ENST00000540865 PRELPP51888 382 aa6.66□□□□□ -1.34
SNHG1-214ENST00000540865 PPP4CP60510 307 aa6.66□□□□□ -1.34
SNHG1-214ENST00000540865 COL13A1Q5TAT6 717 aaPredicted RBP6.66□□□□□ -1.34
SNHG1-214ENST00000540865 COL23A1Q86Y22 540 aaPredicted RBP6.66□□□□□ -1.34
SNHG1-214ENST00000540865 TRPM1Q7Z4N2 1603 aa6.65□□□□□ -1.34
SNHG1-214ENST00000540865 SLC10A3P09131 477 aa6.65□□□□□ -1.34
SNHG1-214ENST00000540865 KCNQ4P56696 695 aa6.65□□□□□ -1.34
SNHG1-214ENST00000540865 JMYQ8N9B5 988 aa6.65□□□□□ -1.34
SNHG1-214ENST00000540865 RDH13Q8NBN7 331 aa6.65□□□□□ -1.34
SNHG1-214ENST00000540865 FLAD1Q8NFF5 587 aa6.65□□□□□ -1.34
SNHG1-214ENST00000540865 FAM117AQ9C073 453 aa6.65□□□□□ -1.34
SNHG1-214ENST00000540865 CCNL1Q9UK58 526 aaPredicted RBP6.65□□□□□ -1.34
SNHG1-214ENST00000540865 PDZRN3Q9UPQ7 1066 aa6.65□□□□□ -1.34
SNHG1-214ENST00000540865 V9GY48 417 aaPredicted RBP6.65□□□□□ -1.34
SNHG1-214ENST00000540865 COL24A1Q17RW2 1714 aa6.64□□□□□ -1.35
SNHG1-214ENST00000540865 AKAP12Q02952 1782 aa6.64□□□□□ -1.35
SNHG1-214ENST00000540865 NBPF1Q3BBV0 1214 aa6.64□□□□□ -1.35
SNHG1-214ENST00000540865 MSL1Q68DK7 614 aa6.64□□□□□ -1.35
SNHG1-214ENST00000540865 TNS4Q8IZW8 715 aa6.64□□□□□ -1.35
SNHG1-214ENST00000540865 IL27Q8NEV9 243 aa6.64□□□□□ -1.35
SNHG1-214ENST00000540865 DDX54Q8TDD1 881 aaKnown RBP6.64□□□□□ -1.35
SNHG1-214ENST00000540865 ANKRD24Q8TF21 1146 aa6.64□□□□□ -1.35
SNHG1-214ENST00000540865 ZNF775Q96BV0 537 aaPredicted RBP6.64□□□□□ -1.35
SNHG1-214ENST00000540865 ANKRD36BQ8N2N9 1353 aa6.64□□□□□ -1.35
SNHG1-214ENST00000540865 NFAT5O94916 1531 aa6.63□□□□□ -1.35
SNHG1-214ENST00000540865 CD46P15529 392 aa6.63□□□□□ -1.35
SNHG1-214ENST00000540865 USP31Q70CQ4 1352 aa6.63□□□□□ -1.35
SNHG1-214ENST00000540865 EVC2Q86UK5 1308 aa6.63□□□□□ -1.35
SNHG1-214ENST00000540865 SLF2Q8IX21 1173 aa6.63□□□□□ -1.35
SNHG1-214ENST00000540865 ZNF516Q92618 1163 aa6.63□□□□□ -1.35
SNHG1-214ENST00000540865 SYTL4Q96C24 671 aaPredicted RBP6.63□□□□□ -1.35
SNHG1-214ENST00000540865 KLRG1Q96E93 195 aa6.63□□□□□ -1.35
SNHG1-214ENST00000540865 BEGAINQ9BUH8 593 aa6.63□□□□□ -1.35
SNHG1-214ENST00000540865 WNK3Q9BYP7 1800 aa6.63□□□□□ -1.35
SNHG1-214ENST00000540865 IL21Q9HBE4 155 aa6.63□□□□□ -1.35
SNHG1-214ENST00000540865 PIK3C2AO00443 1686 aa6.62□□□□□ -1.35
SNHG1-214ENST00000540865 NSD2O96028 1365 aa6.62□□□□□ -1.35
SNHG1-214ENST00000540865 IGSF1Q8N6C5 1336 aa6.62□□□□□ -1.35
SNHG1-214ENST00000540865 BTAF1O14981 1849 aa6.62□□□□□ -1.35
SNHG1-214ENST00000540865 QSER1Q2KHR3 1735 aa6.62□□□□□ -1.35
SNHG1-214ENST00000540865 USP47Q96K76 1375 aa6.61□□□□□ -1.35
SNHG1-214ENST00000540865 CFHP08603 1231 aa6.61□□□□□ -1.35
SNHG1-214ENST00000540865 FSTL1Q12841 308 aa6.61□□□□□ -1.35
SNHG1-214ENST00000540865 SULF1Q8IWU6 871 aa6.61□□□□□ -1.35
SNHG1-214ENST00000540865 EIF4ENIF1Q9NRA8 985 aaKnown RBP6.61□□□□□ -1.35
SNHG1-214ENST00000540865 KTN1Q86UP2 1357 aaKnown RBP6.6□□□□□ -1.35
SNHG1-214ENST00000540865 RAB3GAP2Q9H2M9 1393 aa6.6□□□□□ -1.35
SNHG1-214ENST00000540865 SLC4A3P48751 1232 aa6.6□□□□□ -1.35
SNHG1-214ENST00000540865 NKX2-3Q8TAU0 364 aa6.6□□□□□ -1.35
SNHG1-214ENST00000540865 ZCRB1Q8TBF4 217 aaKnown RBP6.6□□□□□ -1.35
SNHG1-214ENST00000540865 IP6K1Q92551 441 aa6.6□□□□□ -1.35
SNHG1-214ENST00000540865 GCGRP47871 477 aa6.59□□□□□ -1.35
SNHG1-214ENST00000540865 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.59□□□□□ -1.35
SNHG1-214ENST00000540865 C16orf71Q8IYS4 520 aaPredicted RBP6.59□□□□□ -1.35
SNHG1-214ENST00000540865 NMRK2Q9NPI5 230 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms