RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 COL15A1P39059 1388 aa16.88■□□□□ 0.29
RTN3-210ENST00000540798 EPB41L2O43491 1005 aaKnown RBP16.87■□□□□ 0.29
RTN3-210ENST00000540798 UNC5CLQ8IV45 518 aa16.87■□□□□ 0.29
RTN3-210ENST00000540798 SUCLG2Q96I99 432 aa16.87■□□□□ 0.29
RTN3-210ENST00000540798 USP16Q9Y5T5 823 aa16.87■□□□□ 0.29
RTN3-210ENST00000540798 CABP4P57796 275 aa16.87■□□□□ 0.29
RTN3-210ENST00000540798 NUTM1Q86Y26 1132 aa16.87■□□□□ 0.29
RTN3-210ENST00000540798 ZCRB1Q8TBF4 217 aaKnown RBP16.87■□□□□ 0.29
RTN3-210ENST00000540798 XAGE3Q8WTP9 111 aa16.87■□□□□ 0.29
RTN3-210ENST00000540798 METTL22Q9BUU2 404 aaPredicted RBP16.87■□□□□ 0.29
RTN3-210ENST00000540798 NEURL1BA8MQ27 555 aa16.87■□□□□ 0.29
RTN3-210ENST00000540798 TNS2Q63HR2 1409 aa16.87■□□□□ 0.29
RTN3-210ENST00000540798 ERVV-2B6SEH9 535 aa16.86■□□□□ 0.29
RTN3-210ENST00000540798 TTC41PQ6P2S7 1318 aa16.86■□□□□ 0.29
RTN3-210ENST00000540798 AIMP1Q12904 312 aaKnown RBP16.86■□□□□ 0.29
RTN3-210ENST00000540798 COPS6Q7L5N1 327 aa16.86■□□□□ 0.29
RTN3-210ENST00000540798 ERBB4Q15303 1308 aa16.86■□□□□ 0.29
RTN3-210ENST00000540798 MCM4P33991 863 aa16.85■□□□□ 0.29
RTN3-210ENST00000540798 TOM1L2Q6ZVM7 507 aa16.85■□□□□ 0.29
RTN3-210ENST00000540798 RIC3Q7Z5B4 369 aa16.85■□□□□ 0.29
RTN3-210ENST00000540798 ERC1Q8IUD2 1116 aa16.85■□□□□ 0.29
RTN3-210ENST00000540798 MYL6BP14649 208 aa16.85■□□□□ 0.29
RTN3-210ENST00000540798 GCKRQ14397 625 aa16.85■□□□□ 0.29
RTN3-210ENST00000540798 BICC1Q9H694 974 aaKnown RBP16.85■□□□□ 0.29
RTN3-210ENST00000540798 RAB3GAP1Q15042 981 aa16.84■□□□□ 0.29
RTN3-210ENST00000540798 COL22A1Q8NFW1 1626 aaPredicted RBP16.84■□□□□ 0.29
RTN3-210ENST00000540798 TRIM6-TRIM34B2RNG4 842 aa16.84■□□□□ 0.29
RTN3-210ENST00000540798 IL2RBP14784 551 aa16.84■□□□□ 0.29
RTN3-210ENST00000540798 ANKRD13DQ6ZTN6 518 aa16.83■□□□□ 0.29
RTN3-210ENST00000540798 RILPL2Q969X0 211 aa16.83■□□□□ 0.29
RTN3-210ENST00000540798 TJP1Q07157 1748 aa16.83■□□□□ 0.29
RTN3-210ENST00000540798 PLCH1Q4KWH8 1693 aa16.83■□□□□ 0.29
RTN3-210ENST00000540798 NEXNQ0ZGT2 675 aa16.83■□□□□ 0.28
RTN3-210ENST00000540798 ANAPC15P60006 121 aa16.83■□□□□ 0.28
RTN3-210ENST00000540798 COL14A1Q05707 1796 aaKnown RBP16.83■□□□□ 0.28
RTN3-210ENST00000540798 MYD88Q99836 296 aa16.81■□□□□ 0.28
RTN3-210ENST00000540798 PA2G4Q9UQ80 394 aaKnown RBP16.81■□□□□ 0.28
RTN3-210ENST00000540798 CLASRPQ8N2M8 674 aaKnown RBP16.81■□□□□ 0.28
RTN3-210ENST00000540798 WNK3Q9BYP7 1800 aa16.81■□□□□ 0.28
RTN3-210ENST00000540798 ST18O60284 1047 aa16.81■□□□□ 0.28
RTN3-210ENST00000540798 IL25Q9H293 177 aa16.81■□□□□ 0.28
RTN3-210ENST00000540798 AHDC1Q5TGY3 1603 aaPredicted RBP16.8■□□□□ 0.28
RTN3-210ENST00000540798 GLRX3O76003 335 aaKnown RBP16.8■□□□□ 0.28
RTN3-210ENST00000540798 SASH1O94885 1247 aa16.8■□□□□ 0.28
RTN3-210ENST00000540798 PLBD2Q8NHP8 589 aa16.8■□□□□ 0.28
RTN3-210ENST00000540798 CLEC17AQ6ZS10 378 aa16.8■□□□□ 0.28
RTN3-210ENST00000540798 CNTROBQ8N137 903 aa16.8■□□□□ 0.28
RTN3-210ENST00000540798 TNPO1Q92973 898 aaKnown RBP16.8■□□□□ 0.28
RTN3-210ENST00000540798 COL16A1Q07092 1604 aaPredicted RBP16.79■□□□□ 0.28
RTN3-210ENST00000540798 NBPF26B4DH59 902 aa16.79■□□□□ 0.28
RTN3-210ENST00000540798 RABL6Q3YEC7 729 aaPredicted RBP16.79■□□□□ 0.28
RTN3-210ENST00000540798 NBPF14Q5TI25 921 aa16.79■□□□□ 0.28
RTN3-210ENST00000540798 NBPF10Q6P3W6 841 aaKnown RBP16.79■□□□□ 0.28
RTN3-210ENST00000540798 NBPF15Q8N660 670 aa16.79■□□□□ 0.28
RTN3-210ENST00000540798 OS9Q13438 667 aaPredicted RBP16.79■□□□□ 0.28
RTN3-210ENST00000540798 ITGB4P16144 1822 aa16.79■□□□□ 0.28
RTN3-210ENST00000540798 ROBO1Q9Y6N7 1651 aa16.79■□□□□ 0.28
RTN3-210ENST00000540798 DISP2A7MBM2 1401 aa16.79■□□□□ 0.28
RTN3-210ENST00000540798 SGSM2O43147 1006 aa16.79■□□□□ 0.28
RTN3-210ENST00000540798 CASP7P55210 303 aa16.79■□□□□ 0.28
RTN3-210ENST00000540798 EPHA10Q5JZY3 1008 aa16.79■□□□□ 0.28
RTN3-210ENST00000540798 ECHDC1Q9NTX5 307 aa16.79■□□□□ 0.28
RTN3-210ENST00000540798 MCCP23508 829 aa16.78■□□□□ 0.28
RTN3-210ENST00000540798 LRP6O75581 1613 aa16.78■□□□□ 0.28
RTN3-210ENST00000540798 PALD1Q9ULE6 856 aa16.78■□□□□ 0.28
RTN3-210ENST00000540798 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.78■□□□□ 0.28
RTN3-210ENST00000540798 DDX11L8A8MPP1 907 aa16.77■□□□□ 0.28
RTN3-210ENST00000540798 RFX5P48382 616 aaPredicted RBP16.77■□□□□ 0.28
RTN3-210ENST00000540798 PIP4K2AP48426 406 aaPredicted RBP16.77■□□□□ 0.28
RTN3-210ENST00000540798 ANO2Q9NQ90 1003 aa16.77■□□□□ 0.28
RTN3-210ENST00000540798 HSP90AA1P07900 732 aaKnown RBP16.77■□□□□ 0.27
RTN3-210ENST00000540798 HSPA4P34932 840 aa16.77■□□□□ 0.27
RTN3-210ENST00000540798 COPRSQ9NQ92 184 aa16.77■□□□□ 0.27
RTN3-210ENST00000540798 BRPF3Q9ULD4 1205 aa16.76■□□□□ 0.27
RTN3-210ENST00000540798 MAP4K4O95819 1239 aaPredicted RBP16.76■□□□□ 0.27
RTN3-210ENST00000540798 GPATCH3Q96I76 525 aa16.76■□□□□ 0.27
RTN3-210ENST00000540798 RAD50Q92878 1312 aa16.76■□□□□ 0.27
RTN3-210ENST00000540798 CYP2E1P05181 493 aaPredicted RBP16.76■□□□□ 0.27
RTN3-210ENST00000540798 G3BP1Q13283 466 aaKnown RBP eCLIP16.76■□□□□ 0.27
RTN3-210ENST00000540798 MCM2P49736 904 aa16.75■□□□□ 0.27
RTN3-210ENST00000540798 EAF2Q96CJ1 260 aaPredicted RBP16.75■□□□□ 0.27
RTN3-210ENST00000540798 LSG1Q9H089 658 aaKnown RBP16.75■□□□□ 0.27
RTN3-210ENST00000540798 CWC22Q9HCG8 908 aaKnown RBP16.75■□□□□ 0.27
RTN3-210ENST00000540798 STRN4Q9NRL3 753 aa16.75■□□□□ 0.27
RTN3-210ENST00000540798 IFIT2P09913 472 aaKnown RBP16.75■□□□□ 0.27
RTN3-210ENST00000540798 FOXD4L1Q9NU39 408 aa16.75■□□□□ 0.27
RTN3-210ENST00000540798 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.75■□□□□ 0.27
RTN3-210ENST00000540798 AACSQ86V21 672 aa16.74■□□□□ 0.27
RTN3-210ENST00000540798 EVA1CP58658 441 aa16.74■□□□□ 0.27
RTN3-210ENST00000540798 H7C1W4 665 aa16.74■□□□□ 0.27
RTN3-210ENST00000540798 GBP4Q96PP9 640 aa16.73■□□□□ 0.27
RTN3-210ENST00000540798 PTPN12Q05209 780 aaKnown RBP16.73■□□□□ 0.27
RTN3-210ENST00000540798 DDX54Q8TDD1 881 aaKnown RBP16.73■□□□□ 0.27
RTN3-210ENST00000540798 EVI5LQ96CN4 794 aa16.73■□□□□ 0.27
RTN3-210ENST00000540798 NEK4P51957 841 aa16.72■□□□□ 0.27
RTN3-210ENST00000540798 SNRKQ9NRH2 765 aa16.72■□□□□ 0.27
RTN3-210ENST00000540798 TRAK2O60296 914 aa16.72■□□□□ 0.27
RTN3-210ENST00000540798 CUL4AQ13619 759 aa16.72■□□□□ 0.27
RTN3-210ENST00000540798 UBE3BQ7Z3V4 1068 aa16.72■□□□□ 0.27
RTN3-210ENST00000540798 SSFA2P28290 1259 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms