RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 CREBZFQ9NS37 354 aa9.88□□□□□ -0.83
YBX3-209ENST00000540747 ADAMTSL1Q8N6G6 1762 aa9.88□□□□□ -0.83
YBX3-209ENST00000540747 RGL2O15211 777 aa9.87□□□□□ -0.83
YBX3-209ENST00000540747 DDNO94850 711 aaPredicted RBP9.87□□□□□ -0.83
YBX3-209ENST00000540747 TEFQ10587 303 aa9.87□□□□□ -0.83
YBX3-209ENST00000540747 CC2D1BQ5T0F9 858 aaKnown RBP9.87□□□□□ -0.83
YBX3-209ENST00000540747 CNKSR1Q969H4 720 aa9.87□□□□□ -0.83
YBX3-209ENST00000540747 PHACTR3Q96KR7 559 aa9.87□□□□□ -0.83
YBX3-209ENST00000540747 CNTNAP1P78357 1384 aa9.87□□□□□ -0.83
YBX3-209ENST00000540747 SOGA3Q5TF21 947 aa9.86□□□□□ -0.83
YBX3-209ENST00000540747 CLEC4GQ6UXB4 293 aa9.86□□□□□ -0.83
YBX3-209ENST00000540747 MASTLQ96GX5 879 aa9.86□□□□□ -0.83
YBX3-209ENST00000540747 SETDB2Q96T68 719 aa9.86□□□□□ -0.83
YBX3-209ENST00000540747 RSPH6AQ9H0K4 717 aa9.86□□□□□ -0.83
YBX3-209ENST00000540747 ZNF219Q9P2Y4 722 aaPredicted RBP9.86□□□□□ -0.83
YBX3-209ENST00000540747 USP16Q9Y5T5 823 aa9.86□□□□□ -0.83
YBX3-209ENST00000540747 SCN4AP35499 1836 aa9.85□□□□□ -0.83
YBX3-209ENST00000540747 PRAMEF22A3QJZ6 481 aa9.85□□□□□ -0.83
YBX3-209ENST00000540747 CAPN15O75808 1086 aa9.85□□□□□ -0.83
YBX3-209ENST00000540747 ITGBL1O95965 494 aaPredicted RBP9.85□□□□□ -0.83
YBX3-209ENST00000540747 DZIP3Q86Y13 1208 aaKnown RBP9.85□□□□□ -0.83
YBX3-209ENST00000540747 TAF1DQ9H5J8 278 aaPredicted RBP9.85□□□□□ -0.83
YBX3-209ENST00000540747 ZNF541Q9H0D2 1346 aa9.84□□□□□ -0.83
YBX3-209ENST00000540747 NBPF26B4DH59 902 aa9.84□□□□□ -0.83
YBX3-209ENST00000540747 U2SURPO15042 1029 aaKnown RBP9.84□□□□□ -0.83
YBX3-209ENST00000540747 ST5P78524 1137 aa9.84□□□□□ -0.83
YBX3-209ENST00000540747 NBPF10Q6P3W6 841 aaKnown RBP9.84□□□□□ -0.83
YBX3-209ENST00000540747 LDHDQ86WU2 507 aa9.84□□□□□ -0.83
YBX3-209ENST00000540747 NBPF15Q8N660 670 aa9.84□□□□□ -0.83
YBX3-209ENST00000540747 MKRN1Q9UHC7 482 aaKnown RBP9.84□□□□□ -0.83
YBX3-209ENST00000540747 ZNF330Q9Y3S2 320 aaPredicted RBP9.84□□□□□ -0.83
YBX3-209ENST00000540747 IQCA1LA6NCM1 817 aa9.83□□□□□ -0.84
YBX3-209ENST00000540747 BTBD11A6QL63 1104 aa9.83□□□□□ -0.84
YBX3-209ENST00000540747 FOXN1O15353 648 aa9.83□□□□□ -0.84
YBX3-209ENST00000540747 NPR1P16066 1061 aa9.83□□□□□ -0.84
YBX3-209ENST00000540747 PRKAR2BP31323 418 aa9.83□□□□□ -0.84
YBX3-209ENST00000540747 PIP4K2AP48426 406 aaPredicted RBP9.83□□□□□ -0.84
YBX3-209ENST00000540747 FKBP4Q02790 459 aaKnown RBP eCLIP9.83□□□□□ -0.84
YBX3-209ENST00000540747 CCDC93Q567U6 631 aa9.83□□□□□ -0.84
YBX3-209ENST00000540747 COL4A5P29400 1685 aa9.83□□□□□ -0.84
YBX3-209ENST00000540747 CACNA1SQ13698 1873 aa9.83□□□□□ -0.84
YBX3-209ENST00000540747 FZD9O00144 591 aa9.82□□□□□ -0.84
YBX3-209ENST00000540747 SNRPA1P09661 255 aaKnown RBP9.82□□□□□ -0.84
YBX3-209ENST00000540747 CRY2Q49AN0 593 aa9.82□□□□□ -0.84
YBX3-209ENST00000540747 OLFM4Q6UX06 510 aa9.82□□□□□ -0.84
YBX3-209ENST00000540747 NBPF5PQ86XG9 351 aaPredicted RBP9.82□□□□□ -0.84
YBX3-209ENST00000540747 PRDM10Q9NQV6 1147 aa9.82□□□□□ -0.84
YBX3-209ENST00000540747 RIC1Q4ADV7 1423 aa9.82□□□□□ -0.84
YBX3-209ENST00000540747 ABCC12Q96J65 1359 aa9.81□□□□□ -0.84
YBX3-209ENST00000540747 VEGFBP49765 207 aa9.81□□□□□ -0.84
YBX3-209ENST00000540747 ZNF277Q9NRM2 450 aaPredicted RBP9.81□□□□□ -0.84
YBX3-209ENST00000540747 ZNF652Q9Y2D9 606 aa9.81□□□□□ -0.84
YBX3-209ENST00000540747 RASSF10A6NK89 507 aa9.8□□□□□ -0.84
YBX3-209ENST00000540747 TMEM88BA6NKF7 163 aa9.8□□□□□ -0.84
YBX3-209ENST00000540747 HLFQ16534 295 aa9.8□□□□□ -0.84
YBX3-209ENST00000540747 MCM10Q7L590 875 aa9.8□□□□□ -0.84
YBX3-209ENST00000540747 RTKN2Q8IZC4 609 aa9.8□□□□□ -0.84
YBX3-209ENST00000540747 PSMD1Q99460 953 aa9.8□□□□□ -0.84
YBX3-209ENST00000540747 WBP1LQ9NX94 342 aa9.8□□□□□ -0.84
YBX3-209ENST00000540747 HACL1Q9UJ83 578 aa9.8□□□□□ -0.84
YBX3-209ENST00000540747 NIP7Q9Y221 180 aaKnown RBP eCLIP9.8□□□□□ -0.84
YBX3-209ENST00000540747 THSD7BQ9C0I4 1608 aa9.8□□□□□ -0.84
YBX3-209ENST00000540747 LAMB4A4D0S4 1761 aa9.8□□□□□ -0.84
YBX3-209ENST00000540747 LTBP1Q14766 1721 aa9.79□□□□□ -0.84
YBX3-209ENST00000540747 IBTKQ9P2D0 1353 aaPredicted RBP9.79□□□□□ -0.84
YBX3-209ENST00000540747 HTATSF1O43719 755 aaKnown RBP9.79□□□□□ -0.84
YBX3-209ENST00000540747 EPHX2P34913 555 aa9.79□□□□□ -0.84
YBX3-209ENST00000540747 IARSP41252 1262 aaKnown RBP9.79□□□□□ -0.84
YBX3-209ENST00000540747 TPTE2Q6XPS3 522 aa9.79□□□□□ -0.84
YBX3-209ENST00000540747 NPM2Q86SE8 214 aaKnown RBP9.79□□□□□ -0.84
YBX3-209ENST00000540747 CCER1Q8TC90 406 aaPredicted RBP9.79□□□□□ -0.84
YBX3-209ENST00000540747 NPHP1O15259 732 aa9.78□□□□□ -0.84
YBX3-209ENST00000540747 HOXA10P31260 410 aaPredicted RBP9.78□□□□□ -0.84
YBX3-209ENST00000540747 CTCFP49711 727 aaPredicted RBP9.78□□□□□ -0.84
YBX3-209ENST00000540747 DCTN1Q14203 1278 aa9.78□□□□□ -0.84
YBX3-209ENST00000540747 GPC2Q8N158 579 aa9.78□□□□□ -0.84
YBX3-209ENST00000540747 SYNE4Q8N205 404 aa9.78□□□□□ -0.84
YBX3-209ENST00000540747 RNF123Q5XPI4 1314 aa9.78□□□□□ -0.84
YBX3-209ENST00000540747 KDM3BQ7LBC6 1761 aa9.78□□□□□ -0.84
YBX3-209ENST00000540747 ERVV-1B6SEH8 477 aa9.77□□□□□ -0.85
YBX3-209ENST00000540747 PPP2R1AP30153 589 aa9.77□□□□□ -0.85
YBX3-209ENST00000540747 SLC51AQ86UW1 340 aa9.77□□□□□ -0.85
YBX3-209ENST00000540747 PNMA8AQ86V59 439 aaPredicted RBP9.77□□□□□ -0.85
YBX3-209ENST00000540747 CFAP53Q96M91 514 aa9.77□□□□□ -0.85
YBX3-209ENST00000540747 UBN2Q6ZU65 1347 aa9.77□□□□□ -0.85
YBX3-209ENST00000540747 U2AF1L5P0DN76 240 aaPredicted RBP9.76□□□□□ -0.85
YBX3-209ENST00000540747 HSPA8P11142 646 aaKnown RBP9.76□□□□□ -0.85
YBX3-209ENST00000540747 ALDH1B1P30837 517 aa9.76□□□□□ -0.85
YBX3-209ENST00000540747 SCNN1DP51172 638 aa9.76□□□□□ -0.85
YBX3-209ENST00000540747 U2AF1Q01081 240 aaKnown RBP eCLIP9.76□□□□□ -0.85
YBX3-209ENST00000540747 TAF7Q15545 349 aaPredicted RBP9.76□□□□□ -0.85
YBX3-209ENST00000540747 EAPPQ56P03 285 aaPredicted RBP9.76□□□□□ -0.85
YBX3-209ENST00000540747 MAP1SQ66K74 1059 aaPredicted RBP9.76□□□□□ -0.85
YBX3-209ENST00000540747 CC2D2BQ6DHV5 1058 aa9.76□□□□□ -0.85
YBX3-209ENST00000540747 CNTROBQ8N137 903 aa9.76□□□□□ -0.85
YBX3-209ENST00000540747 RTF1Q92541 710 aaKnown RBP9.76□□□□□ -0.85
YBX3-209ENST00000540747 NUDCQ9Y266 331 aa9.76□□□□□ -0.85
YBX3-209ENST00000540747 MAP3K15Q6ZN16 1313 aa9.76□□□□□ -0.85
YBX3-209ENST00000540747 LBX1P52954 281 aa9.75□□□□□ -0.85
YBX3-209ENST00000540747 TTLL7Q6ZT98 887 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms