RNA–Protein interactions for RNA: ENST00000540699.1

ATL3-204, Transcript of atlastin GTPase 3, humanhuman

TSL 3

Gene ATL3, Length 714 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3-204ENST00000540699 RFC4P35249 363 aa13.61□□□□□ -0.23
ATL3-204ENST00000540699 DDX21Q9NR30 783 aaKnown RBP eCLIP13.61□□□□□ -0.23
ATL3-204ENST00000540699 CD2APQ9Y5K6 639 aa13.61□□□□□ -0.23
ATL3-204ENST00000540699 KIF13BQ9NQT8 1826 aa13.6□□□□□ -0.23
ATL3-204ENST00000540699 EIF2S2P20042 333 aaKnown RBP13.6□□□□□ -0.23
ATL3-204ENST00000540699 PIP4K2AP48426 406 aaPredicted RBP13.6□□□□□ -0.23
ATL3-204ENST00000540699 EXOSC9Q06265 439 aaKnown RBP13.6□□□□□ -0.23
ATL3-204ENST00000540699 TWISTNBQ3B726 338 aaPredicted RBP13.6□□□□□ -0.23
ATL3-204ENST00000540699 HDGFL1Q5TGJ6 251 aa13.6□□□□□ -0.23
ATL3-204ENST00000540699 ERICH6BQ5W0A0 696 aa13.6□□□□□ -0.23
ATL3-204ENST00000540699 CHMP4AQ9BY43 222 aa13.6□□□□□ -0.23
ATL3-204ENST00000540699 ANKRD36CQ5JPF3 1778 aa13.6□□□□□ -0.23
ATL3-204ENST00000540699 NRXN2Q9P2S2 1712 aa13.59□□□□□ -0.23
ATL3-204ENST00000540699 VAMP4O75379 141 aa13.59□□□□□ -0.23
ATL3-204ENST00000540699 PROSER3Q2NL68 480 aa13.59□□□□□ -0.23
ATL3-204ENST00000540699 NLGN1Q8N2Q7 840 aa13.59□□□□□ -0.23
ATL3-204ENST00000540699 BCL2L12Q9HB09 334 aa13.59□□□□□ -0.23
ATL3-204ENST00000540699 SRP68Q9UHB9 627 aaKnown RBP13.59□□□□□ -0.23
ATL3-204ENST00000540699 AFDNP55196 1824 aaKnown RBP13.59□□□□□ -0.23
ATL3-204ENST00000540699 KIAA1551Q9HCM1 1747 aa13.59□□□□□ -0.23
ATL3-204ENST00000540699 ELL2O00472 640 aaPredicted RBP13.58□□□□□ -0.24
ATL3-204ENST00000540699 CAMTA2O94983 1202 aa13.58□□□□□ -0.24
ATL3-204ENST00000540699 RARSP54136 660 aaKnown RBP13.58□□□□□ -0.24
ATL3-204ENST00000540699 IRX6P78412 446 aaPredicted RBP13.58□□□□□ -0.24
ATL3-204ENST00000540699 USPL1Q5W0Q7 1092 aa13.58□□□□□ -0.24
ATL3-204ENST00000540699 DZIP3Q86Y13 1208 aaKnown RBP13.58□□□□□ -0.24
ATL3-204ENST00000540699 CHPF2Q9P2E5 772 aa13.58□□□□□ -0.24
ATL3-204ENST00000540699 DBF4Q9UBU7 674 aaPredicted RBP13.58□□□□□ -0.24
ATL3-204ENST00000540699 ARFGEF2Q9Y6D5 1785 aa13.58□□□□□ -0.24
ATL3-204ENST00000540699 ZPR1O75312 459 aa13.57□□□□□ -0.24
ATL3-204ENST00000540699 MYL6BP14649 208 aa13.57□□□□□ -0.24
ATL3-204ENST00000540699 CCDC30Q5VVM6 783 aa13.57□□□□□ -0.24
ATL3-204ENST00000540699 TBC1D2BQ9UPU7 963 aa13.57□□□□□ -0.24
ATL3-204ENST00000540699 ERVV-1B6SEH8 477 aa13.56□□□□□ -0.24
ATL3-204ENST00000540699 BCAR3O75815 825 aa13.56□□□□□ -0.24
ATL3-204ENST00000540699 ANXA1P04083 346 aa13.56□□□□□ -0.24
ATL3-204ENST00000540699 TM4SF1P30408 202 aa13.56□□□□□ -0.24
ATL3-204ENST00000540699 CLEC4GQ6UXB4 293 aa13.56□□□□□ -0.24
ATL3-204ENST00000540699 NPM2Q86SE8 214 aaKnown RBP13.56□□□□□ -0.24
ATL3-204ENST00000540699 NECTIN2Q92692 538 aa13.56□□□□□ -0.24
ATL3-204ENST00000540699 HYPKQ9NX55 129 aa13.56□□□□□ -0.24
ATL3-204ENST00000540699 MAP3K15Q6ZN16 1313 aa13.56□□□□□ -0.24
ATL3-204ENST00000540699 N4BP2Q86UW6 1770 aaPredicted RBP13.55□□□□□ -0.24
ATL3-204ENST00000540699 TTLL7Q6ZT98 887 aa13.55□□□□□ -0.24
ATL3-204ENST00000540699 ZNF330Q9Y3S2 320 aaPredicted RBP13.55□□□□□ -0.24
ATL3-204ENST00000540699 ADCY9O60503 1353 aa13.55□□□□□ -0.24
ATL3-204ENST00000540699 ATP10DQ9P241 1426 aa13.55□□□□□ -0.24
ATL3-204ENST00000540699 PLIN1O60240 522 aa13.54□□□□□ -0.24
ATL3-204ENST00000540699 COPS6Q7L5N1 327 aa13.54□□□□□ -0.24
ATL3-204ENST00000540699 ZNF428Q96B54 188 aa13.54□□□□□ -0.24
ATL3-204ENST00000540699 BRCA1P38398 1863 aaKnown RBP13.54□□□□□ -0.24
ATL3-204ENST00000540699 MMP10P09238 476 aa13.53□□□□□ -0.24
ATL3-204ENST00000540699 DDR1Q08345 913 aa13.53□□□□□ -0.24
ATL3-204ENST00000540699 NFIXQ14938 502 aa13.53□□□□□ -0.24
ATL3-204ENST00000540699 KIF6Q6ZMV9 814 aa13.53□□□□□ -0.24
ATL3-204ENST00000540699 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.53□□□□□ -0.24
ATL3-204ENST00000540699 XAGE3Q8WTP9 111 aa13.53□□□□□ -0.24
ATL3-204ENST00000540699 ZNF652Q9Y2D9 606 aa13.53□□□□□ -0.24
ATL3-204ENST00000540699 POLRMTO00411 1230 aaKnown RBP13.52□□□□□ -0.25
ATL3-204ENST00000540699 HLFQ16534 295 aa13.52□□□□□ -0.25
ATL3-204ENST00000540699 ALDH1L2Q3SY69 923 aa13.52□□□□□ -0.25
ATL3-204ENST00000540699 TBC1D9BQ66K14 1250 aa13.52□□□□□ -0.25
ATL3-204ENST00000540699 GIGYF2Q6Y7W6 1299 aaKnown RBP13.52□□□□□ -0.25
ATL3-204ENST00000540699 SSH1Q8WYL5 1049 aa13.52□□□□□ -0.25
ATL3-204ENST00000540699 STK31Q9BXU1 1019 aa13.52□□□□□ -0.25
ATL3-204ENST00000540699 GPBP1L1Q9HC44 474 aaPredicted RBP13.52□□□□□ -0.25
ATL3-204ENST00000540699 PXDNLA1KZ92 1463 aa13.52□□□□□ -0.25
ATL3-204ENST00000540699 ANKRD31Q8N7Z5 1873 aa13.52□□□□□ -0.25
ATL3-204ENST00000540699 C10orf71Q711Q0 1435 aa13.51□□□□□ -0.25
ATL3-204ENST00000540699 BRPF1P55201 1214 aaPredicted RBP13.51□□□□□ -0.25
ATL3-204ENST00000540699 C20orf194Q5TEA3 1177 aa13.51□□□□□ -0.25
ATL3-204ENST00000540699 PLBD2Q8NHP8 589 aa13.51□□□□□ -0.25
ATL3-204ENST00000540699 ZBTB3Q9H5J0 574 aa13.51□□□□□ -0.25
ATL3-204ENST00000540699 PHAXQ9H814 394 aaKnown RBP13.51□□□□□ -0.25
ATL3-204ENST00000540699 CARMIL3Q8ND23 1372 aa13.5□□□□□ -0.25
ATL3-204ENST00000540699 IBTKQ9P2D0 1353 aaPredicted RBP13.5□□□□□ -0.25
ATL3-204ENST00000540699 SLC4A2P04920 1241 aa13.5□□□□□ -0.25
ATL3-204ENST00000540699 HSPA6P17066 643 aa13.5□□□□□ -0.25
ATL3-204ENST00000540699 WWC3Q9ULE0 1092 aa13.5□□□□□ -0.25
ATL3-204ENST00000540699 PARP3Q9Y6F1 533 aa13.5□□□□□ -0.25
ATL3-204ENST00000540699 ARFGEF1Q9Y6D6 1849 aa13.49□□□□□ -0.25
ATL3-204ENST00000540699 TCERG1O14776 1098 aaKnown RBP13.49□□□□□ -0.25
ATL3-204ENST00000540699 AIMP1Q12904 312 aaKnown RBP13.49□□□□□ -0.25
ATL3-204ENST00000540699 ANKRD13DQ6ZTN6 518 aa13.49□□□□□ -0.25
ATL3-204ENST00000540699 G2E3Q7L622 706 aa13.49□□□□□ -0.25
ATL3-204ENST00000540699 ZNF34Q8IZ26 560 aa13.49□□□□□ -0.25
ATL3-204ENST00000540699 BCL2L13Q9BXK5 485 aa13.49□□□□□ -0.25
ATL3-204ENST00000540699 DLEC1Q9Y238 1755 aa13.49□□□□□ -0.25
ATL3-204ENST00000540699 FLIIQ13045 1269 aa13.48□□□□□ -0.25
ATL3-204ENST00000540699 PDE3AQ14432 1141 aa13.48□□□□□ -0.25
ATL3-204ENST00000540699 HSP90AB3PQ58FF7 597 aa13.48□□□□□ -0.25
ATL3-204ENST00000540699 MRPL50Q8N5N7 158 aaKnown RBP13.48□□□□□ -0.25
ATL3-204ENST00000540699 EXOC6Q8TAG9 804 aa13.48□□□□□ -0.25
ATL3-204ENST00000540699 CRBNQ96SW2 442 aa13.48□□□□□ -0.25
ATL3-204ENST00000540699 SETDB2Q96T68 719 aa13.48□□□□□ -0.25
ATL3-204ENST00000540699 SMC4Q9NTJ3 1288 aa13.48□□□□□ -0.25
ATL3-204ENST00000540699 PPP4R2Q9NY27 417 aa13.48□□□□□ -0.25
ATL3-204ENST00000540699 NIP7Q9Y221 180 aaKnown RBP eCLIP13.48□□□□□ -0.25
ATL3-204ENST00000540699 UBN2Q6ZU65 1347 aa13.47□□□□□ -0.25
ATL3-204ENST00000540699 DDX58O95786 925 aaKnown RBP13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms