RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 EZH2Q15910 746 aaKnown RBP13.51□□□□□ -0.25
VPS33A-204ENST00000540669 ZNF827Q17R98 1081 aa13.51□□□□□ -0.25
VPS33A-204ENST00000540669 STK31Q9BXU1 1019 aa13.51□□□□□ -0.25
VPS33A-204ENST00000540669 PHAXQ9H814 394 aaKnown RBP13.51□□□□□ -0.25
VPS33A-204ENST00000540669 ANO8Q9HCE9 1232 aaPredicted RBP13.51□□□□□ -0.25
VPS33A-204ENST00000540669 TCERG1O14776 1098 aaKnown RBP13.5□□□□□ -0.25
VPS33A-204ENST00000540669 PIP4K2AP48426 406 aaPredicted RBP13.49□□□□□ -0.25
VPS33A-204ENST00000540669 ATF7IPQ6VMQ6 1270 aa13.49□□□□□ -0.25
VPS33A-204ENST00000540669 NECTIN2Q92692 538 aa13.49□□□□□ -0.25
VPS33A-204ENST00000540669 TNNQ9UQP3 1299 aa13.49□□□□□ -0.25
VPS33A-204ENST00000540669 RLBP1P12271 317 aa13.48□□□□□ -0.25
VPS33A-204ENST00000540669 SSFA2P28290 1259 aa13.48□□□□□ -0.25
VPS33A-204ENST00000540669 PDE3AQ14432 1141 aa13.48□□□□□ -0.25
VPS33A-204ENST00000540669 TTLL7Q6ZT98 887 aa13.48□□□□□ -0.25
VPS33A-204ENST00000540669 XAGE3Q8WTP9 111 aa13.48□□□□□ -0.25
VPS33A-204ENST00000540669 NOB1Q9ULX3 412 aaKnown RBP13.48□□□□□ -0.25
VPS33A-204ENST00000540669 MAP3K15Q6ZN16 1313 aa13.47□□□□□ -0.25
VPS33A-204ENST00000540669 USP42Q9H9J4 1324 aaKnown RBP13.47□□□□□ -0.25
VPS33A-204ENST00000540669 CAMTA2O94983 1202 aa13.47□□□□□ -0.25
VPS33A-204ENST00000540669 ZKSCAN2Q63HK3 967 aa13.47□□□□□ -0.25
VPS33A-204ENST00000540669 COPS6Q7L5N1 327 aa13.47□□□□□ -0.25
VPS33A-204ENST00000540669 API5Q9BZZ5 524 aaKnown RBP13.47□□□□□ -0.25
VPS33A-204ENST00000540669 STK32BQ9NY57 414 aa13.47□□□□□ -0.25
VPS33A-204ENST00000540669 PNPLA7Q6ZV29 1317 aa13.46□□□□□ -0.25
VPS33A-204ENST00000540669 ERVV-1B6SEH8 477 aa13.46□□□□□ -0.25
VPS33A-204ENST00000540669 MYL6BP14649 208 aa13.46□□□□□ -0.25
VPS33A-204ENST00000540669 INTS3Q68E01 1043 aaKnown RBP13.46□□□□□ -0.25
VPS33A-204ENST00000540669 KSR2Q6VAB6 950 aa13.46□□□□□ -0.25
VPS33A-204ENST00000540669 PLBD2Q8NHP8 589 aa13.46□□□□□ -0.25
VPS33A-204ENST00000540669 BCL2L12Q9HB09 334 aa13.46□□□□□ -0.25
VPS33A-204ENST00000540669 DDX60Q8IY21 1712 aaKnown RBP13.46□□□□□ -0.25
VPS33A-204ENST00000540669 GNPATO15228 680 aa13.45□□□□□ -0.26
VPS33A-204ENST00000540669 IPO8O15397 1037 aaKnown RBP13.45□□□□□ -0.26
VPS33A-204ENST00000540669 CANXP27824 592 aaKnown RBP13.45□□□□□ -0.26
VPS33A-204ENST00000540669 C20orf194Q5TEA3 1177 aa13.45□□□□□ -0.26
VPS33A-204ENST00000540669 SUPT16HQ9Y5B9 1047 aaKnown RBP13.45□□□□□ -0.26
VPS33A-204ENST00000540669 PI4KAP2A4QPH2 592 aa13.44□□□□□ -0.26
VPS33A-204ENST00000540669 PLIN1O60240 522 aa13.44□□□□□ -0.26
VPS33A-204ENST00000540669 TRIM28Q13263 835 aaKnown RBP13.44□□□□□ -0.26
VPS33A-204ENST00000540669 FKBP5Q13451 457 aaPredicted RBP13.44□□□□□ -0.26
VPS33A-204ENST00000540669 BEND3Q5T5X7 828 aa13.44□□□□□ -0.26
VPS33A-204ENST00000540669 PI4KAP1Q8N8J0 262 aa13.44□□□□□ -0.26
VPS33A-204ENST00000540669 DNAAF4Q8WXU2 420 aa13.44□□□□□ -0.26
VPS33A-204ENST00000540669 AK7Q96M32 723 aa13.44□□□□□ -0.26
VPS33A-204ENST00000540669 ISCA1Q9BUE6 129 aa13.44□□□□□ -0.26
VPS33A-204ENST00000540669 NARFQ9UHQ1 456 aa13.44□□□□□ -0.26
VPS33A-204ENST00000540669 RTCBQ9Y3I0 505 aaKnown RBP13.44□□□□□ -0.26
VPS33A-204ENST00000540669 LRP5O75197 1615 aa13.43□□□□□ -0.26
VPS33A-204ENST00000540669 A0A087WZG4 1122 aa13.43□□□□□ -0.26
VPS33A-204ENST00000540669 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.43□□□□□ -0.26
VPS33A-204ENST00000540669 IGKV5-2P06315 115 aa13.43□□□□□ -0.26
VPS33A-204ENST00000540669 SLC15A2Q16348 729 aa13.43□□□□□ -0.26
VPS33A-204ENST00000540669 RIC1Q4ADV7 1423 aa13.43□□□□□ -0.26
VPS33A-204ENST00000540669 GIGYF2Q6Y7W6 1299 aaKnown RBP13.43□□□□□ -0.26
VPS33A-204ENST00000540669 ANKRD13DQ6ZTN6 518 aa13.43□□□□□ -0.26
VPS33A-204ENST00000540669 DZIP3Q86Y13 1208 aaKnown RBP13.43□□□□□ -0.26
VPS33A-204ENST00000540669 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.43□□□□□ -0.26
VPS33A-204ENST00000540669 METTL22Q9BUU2 404 aaPredicted RBP13.43□□□□□ -0.26
VPS33A-204ENST00000540669 UTYO14607 1347 aa13.42□□□□□ -0.26
VPS33A-204ENST00000540669 KIF13BQ9NQT8 1826 aa13.42□□□□□ -0.26
VPS33A-204ENST00000540669 F6X3S4 739 aa13.42□□□□□ -0.26
VPS33A-204ENST00000540669 DDX58O95786 925 aaKnown RBP13.42□□□□□ -0.26
VPS33A-204ENST00000540669 CLEC4GQ6UXB4 293 aa13.42□□□□□ -0.26
VPS33A-204ENST00000540669 DZIP1LQ8IYY4 767 aaKnown RBP13.42□□□□□ -0.26
VPS33A-204ENST00000540669 ARHGEF1Q92888 912 aaKnown RBP13.42□□□□□ -0.26
VPS33A-204ENST00000540669 MAP3K2Q9Y2U5 619 aa13.42□□□□□ -0.26
VPS33A-204ENST00000540669 MYH3P11055 1940 aa13.42□□□□□ -0.26
VPS33A-204ENST00000540669 UBN2Q6ZU65 1347 aa13.41□□□□□ -0.26
VPS33A-204ENST00000540669 TNRC6CQ9HCJ0 1690 aaKnown RBP13.41□□□□□ -0.26
VPS33A-204ENST00000540669 PSDA5PKW4 1024 aaPredicted RBP13.41□□□□□ -0.26
VPS33A-204ENST00000540669 MS4A1P11836 297 aa13.41□□□□□ -0.26
VPS33A-204ENST00000540669 R3HDM1Q15032 1099 aaKnown RBP13.41□□□□□ -0.26
VPS33A-204ENST00000540669 HLFQ16534 295 aa13.41□□□□□ -0.26
VPS33A-204ENST00000540669 SMIM5Q71RC9 77 aa13.41□□□□□ -0.26
VPS33A-204ENST00000540669 ZNF34Q8IZ26 560 aa13.41□□□□□ -0.26
VPS33A-204ENST00000540669 TMEM57Q8N5G2 664 aa13.41□□□□□ -0.26
VPS33A-204ENST00000540669 LINS1Q8NG48 757 aa13.41□□□□□ -0.26
VPS33A-204ENST00000540669 PANK1Q8TE04 598 aa13.41□□□□□ -0.26
VPS33A-204ENST00000540669 FRAT1Q92837 279 aaPredicted RBP13.41□□□□□ -0.26
VPS33A-204ENST00000540669 ANKRD31Q8N7Z5 1873 aa13.41□□□□□ -0.26
VPS33A-204ENST00000540669 KIAA1551Q9HCM1 1747 aa13.4□□□□□ -0.26
VPS33A-204ENST00000540669 ALDH1L1O75891 902 aa13.4□□□□□ -0.26
VPS33A-204ENST00000540669 GYS1P13807 737 aa13.4□□□□□ -0.26
VPS33A-204ENST00000540669 CCT4P50991 539 aaKnown RBP13.4□□□□□ -0.26
VPS33A-204ENST00000540669 MVPQ14764 893 aaKnown RBP13.4□□□□□ -0.26
VPS33A-204ENST00000540669 KIF6Q6ZMV9 814 aa13.4□□□□□ -0.26
VPS33A-204ENST00000540669 FLAD1Q8NFF5 587 aa13.4□□□□□ -0.26
VPS33A-204ENST00000540669 ATF5Q9Y2D1 282 aaPredicted RBP13.4□□□□□ -0.26
VPS33A-204ENST00000540669 NEURL1BA8MQ27 555 aa13.39□□□□□ -0.27
VPS33A-204ENST00000540669 CASP7P55210 303 aa13.39□□□□□ -0.27
VPS33A-204ENST00000540669 AIMP1Q12904 312 aaKnown RBP13.39□□□□□ -0.27
VPS33A-204ENST00000540669 TCIRG1Q13488 830 aa13.39□□□□□ -0.27
VPS33A-204ENST00000540669 COL23A1Q86Y22 540 aaPredicted RBP13.39□□□□□ -0.27
VPS33A-204ENST00000540669 ZBTB3Q9H5J0 574 aa13.39□□□□□ -0.27
VPS33A-204ENST00000540669 SRP68Q9UHB9 627 aaKnown RBP13.39□□□□□ -0.27
VPS33A-204ENST00000540669 TBC1D2BQ9UPU7 963 aa13.39□□□□□ -0.27
VPS33A-204ENST00000540669 HSP90AB3PQ58FF7 597 aa13.38□□□□□ -0.27
VPS33A-204ENST00000540669 TRAPPC3LQ5T215 181 aa13.38□□□□□ -0.27
VPS33A-204ENST00000540669 CLUAP1Q96AJ1 413 aa13.38□□□□□ -0.27
VPS33A-204ENST00000540669 COL11A2P13942 1736 aaPredicted RBP13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms