RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 KANK4Q5T7N3 995 aaPredicted RBP7.83□□□□□ -1.16
VPS13A-213ENST00000539950 POTEAQ6S8J7 498 aa7.83□□□□□ -1.16
VPS13A-213ENST00000539950 RHPN1Q8TCX5 695 aa7.83□□□□□ -1.16
VPS13A-213ENST00000539950 RRAGCQ9HB90 399 aa7.83□□□□□ -1.16
VPS13A-213ENST00000539950 HCN4Q9Y3Q4 1203 aa7.83□□□□□ -1.16
VPS13A-213ENST00000539950 RBM19Q9Y4C8 960 aaKnown RBP7.83□□□□□ -1.16
VPS13A-213ENST00000539950 HIRAP54198 1017 aaPredicted RBP7.82□□□□□ -1.16
VPS13A-213ENST00000539950 GRIN2CQ14957 1233 aa7.82□□□□□ -1.16
VPS13A-213ENST00000539950 GPAT2Q6NUI2 795 aa7.82□□□□□ -1.16
VPS13A-213ENST00000539950 DCAF5Q96JK2 942 aa7.82□□□□□ -1.16
VPS13A-213ENST00000539950 MARK1Q9P0L2 795 aa7.82□□□□□ -1.16
VPS13A-213ENST00000539950 GPC6Q9Y625 555 aaPredicted RBP7.82□□□□□ -1.16
VPS13A-213ENST00000539950 PPP1R12BO60237 982 aaPredicted RBP7.81□□□□□ -1.16
VPS13A-213ENST00000539950 AMPD1P23109 780 aa7.81□□□□□ -1.16
VPS13A-213ENST00000539950 ADH6P28332 368 aa7.81□□□□□ -1.16
VPS13A-213ENST00000539950 SEC13P55735 322 aa7.81□□□□□ -1.16
VPS13A-213ENST00000539950 PCBP4P57723 403 aaKnown RBP7.81□□□□□ -1.16
VPS13A-213ENST00000539950 PTK7Q13308 1070 aa7.81□□□□□ -1.16
VPS13A-213ENST00000539950 C1orf53Q5VUE5 145 aa7.81□□□□□ -1.16
VPS13A-213ENST00000539950 LARP1Q6PKG0 1096 aaKnown RBP7.81□□□□□ -1.16
VPS13A-213ENST00000539950 FCHSD1Q86WN1 690 aa7.81□□□□□ -1.16
VPS13A-213ENST00000539950 HSH2DQ96JZ2 352 aa7.81□□□□□ -1.16
VPS13A-213ENST00000539950 BTBD6Q96KE9 485 aa7.81□□□□□ -1.16
VPS13A-213ENST00000539950 PHACTR1Q9C0D0 580 aa7.81□□□□□ -1.16
VPS13A-213ENST00000539950 NEUROD4Q9HD90 331 aa7.81□□□□□ -1.16
VPS13A-213ENST00000539950 ZNF777Q9ULD5 760 aaPredicted RBP7.81□□□□□ -1.16
VPS13A-213ENST00000539950 LGR5O75473 907 aa7.8□□□□□ -1.16
VPS13A-213ENST00000539950 LMOD1P29536 600 aaPredicted RBP7.8□□□□□ -1.16
VPS13A-213ENST00000539950 DPYDQ12882 1025 aa7.8□□□□□ -1.16
VPS13A-213ENST00000539950 LAMC2Q13753 1193 aa7.8□□□□□ -1.16
VPS13A-213ENST00000539950 LINC00114Q6XXX2 140 aa7.8□□□□□ -1.16
VPS13A-213ENST00000539950 ZNF280CQ8ND82 737 aa7.8□□□□□ -1.16
VPS13A-213ENST00000539950 SCG3Q8WXD2 468 aaKnown RBP7.8□□□□□ -1.16
VPS13A-213ENST00000539950 AVENQ9NQS1 362 aaPredicted RBP7.8□□□□□ -1.16
VPS13A-213ENST00000539950 MKL2Q9ULH7 1088 aa7.8□□□□□ -1.16
VPS13A-213ENST00000539950 CHMP3Q9Y3E7 222 aa7.8□□□□□ -1.16
VPS13A-213ENST00000539950 ATAD2Q6PL18 1390 aa7.8□□□□□ -1.16
VPS13A-213ENST00000539950 USP17L15C9J2P7 530 aa7.79□□□□□ -1.16
VPS13A-213ENST00000539950 USP17L10C9JJH3 530 aa7.79□□□□□ -1.16
VPS13A-213ENST00000539950 USP17L13C9JLJ4 530 aa7.79□□□□□ -1.16
VPS13A-213ENST00000539950 USP17L12C9JPN9 530 aa7.79□□□□□ -1.16
VPS13A-213ENST00000539950 USP17L11C9JVI0 530 aa7.79□□□□□ -1.16
VPS13A-213ENST00000539950 USP17L21D6R901 530 aa7.79□□□□□ -1.16
VPS13A-213ENST00000539950 USP17L18D6R9N7 530 aa7.79□□□□□ -1.16
VPS13A-213ENST00000539950 USP17L22D6RA61 530 aa7.79□□□□□ -1.16
VPS13A-213ENST00000539950 USP17L17D6RBQ6 530 aa7.79□□□□□ -1.16
VPS13A-213ENST00000539950 USP17L19D6RCP7 530 aa7.79□□□□□ -1.16
VPS13A-213ENST00000539950 USP17L20D6RJB6 530 aa7.79□□□□□ -1.16
VPS13A-213ENST00000539950 ITGB2P05107 769 aa7.79□□□□□ -1.16
VPS13A-213ENST00000539950 USP17L24Q0WX57 530 aa7.79□□□□□ -1.16
VPS13A-213ENST00000539950 SFSWAPQ12872 951 aaKnown RBP7.79□□□□□ -1.16
VPS13A-213ENST00000539950 PLA2G4EQ3MJ16 856 aa7.79□□□□□ -1.16
VPS13A-213ENST00000539950 ZNF468Q5VIY5 522 aaPredicted RBP7.79□□□□□ -1.16
VPS13A-213ENST00000539950 GAS2L2Q8NHY3 880 aa7.79□□□□□ -1.16
VPS13A-213ENST00000539950 C2orf49Q9BVC5 232 aaPredicted RBP7.79□□□□□ -1.16
VPS13A-213ENST00000539950 PRR12Q9ULL5 1215 aa7.79□□□□□ -1.16
VPS13A-213ENST00000539950 COL8A1P27658 744 aa7.78□□□□□ -1.16
VPS13A-213ENST00000539950 CFAP70Q5T0N1 1121 aa7.78□□□□□ -1.16
VPS13A-213ENST00000539950 CHSY3Q70JA7 882 aa7.78□□□□□ -1.16
VPS13A-213ENST00000539950 ALDH16A1Q8IZ83 802 aa7.78□□□□□ -1.16
VPS13A-213ENST00000539950 CHMP7Q8WUX9 453 aaPredicted RBP7.78□□□□□ -1.16
VPS13A-213ENST00000539950 SLC30A3Q99726 388 aa7.78□□□□□ -1.16
VPS13A-213ENST00000539950 HINFPQ9BQA5 517 aa7.78□□□□□ -1.16
VPS13A-213ENST00000539950 VRTNQ9H8Y1 702 aa7.78□□□□□ -1.16
VPS13A-213ENST00000539950 FAM196BA6NMK8 535 aa7.77□□□□□ -1.17
VPS13A-213ENST00000539950 DGKGP49619 791 aa7.77□□□□□ -1.17
VPS13A-213ENST00000539950 SYT9Q86SS6 491 aa7.77□□□□□ -1.17
VPS13A-213ENST00000539950 ANKMY2Q8IV38 441 aa7.77□□□□□ -1.17
VPS13A-213ENST00000539950 STAG2Q8N3U4 1231 aa7.77□□□□□ -1.17
VPS13A-213ENST00000539950 NGLY1Q96IV0 654 aa7.77□□□□□ -1.17
VPS13A-213ENST00000539950 SUSD3Q96L08 255 aa7.77□□□□□ -1.17
VPS13A-213ENST00000539950 SUV39H2Q9H5I1 410 aa7.77□□□□□ -1.17
VPS13A-213ENST00000539950 IGHA1P01876 353 aa7.76□□□□□ -1.17
VPS13A-213ENST00000539950 CEP63Q96MT8 703 aa7.76□□□□□ -1.17
VPS13A-213ENST00000539950 ARXQ96QS3 562 aa7.76□□□□□ -1.17
VPS13A-213ENST00000539950 BRD7Q9NPI1 651 aa7.76□□□□□ -1.17
VPS13A-213ENST00000539950 KRBA1A5PL33 1030 aa7.75□□□□□ -1.17
VPS13A-213ENST00000539950 TYRO3Q06418 890 aa7.75□□□□□ -1.17
VPS13A-213ENST00000539950 RAB44Q7Z6P3 723 aaPredicted RBP7.75□□□□□ -1.17
VPS13A-213ENST00000539950 ANKIB1Q9P2G1 1089 aa7.75□□□□□ -1.17
VPS13A-213ENST00000539950 GNB5O14775 395 aa7.74□□□□□ -1.17
VPS13A-213ENST00000539950 SUZ12Q15022 739 aaKnown RBP7.74□□□□□ -1.17
VPS13A-213ENST00000539950 MDFIQ99750 246 aa7.74□□□□□ -1.17
VPS13A-213ENST00000539950 SPEM2Q0P670 501 aa7.73□□□□□ -1.17
VPS13A-213ENST00000539950 CDCA8Q53HL2 280 aa7.73□□□□□ -1.17
VPS13A-213ENST00000539950 SPOCK3Q9BQ16 436 aa7.73□□□□□ -1.17
VPS13A-213ENST00000539950 ELOA3CA0A087WX78 387 aaPredicted RBP7.72□□□□□ -1.17
VPS13A-213ENST00000539950 ELOA3DA6NLF2 546 aaPredicted RBP7.72□□□□□ -1.17
VPS13A-213ENST00000539950 SIN3BO75182 1162 aa7.72□□□□□ -1.17
VPS13A-213ENST00000539950 PROCP04070 461 aa7.72□□□□□ -1.17
VPS13A-213ENST00000539950 IGFBP4P22692 258 aa7.72□□□□□ -1.17
VPS13A-213ENST00000539950 KCNQ4P56696 695 aa7.72□□□□□ -1.17
VPS13A-213ENST00000539950 ELOA3BQ3SY89 546 aa7.72□□□□□ -1.17
VPS13A-213ENST00000539950 BTLAQ7Z6A9 289 aa7.72□□□□□ -1.17
VPS13A-213ENST00000539950 ELOA3Q8NG57 546 aa7.72□□□□□ -1.17
VPS13A-213ENST00000539950 KCNH4Q9UQ05 1017 aa7.72□□□□□ -1.17
VPS13A-213ENST00000539950 MSTNO14793 375 aa7.71□□□□□ -1.18
VPS13A-213ENST00000539950 RFX1P22670 979 aa7.71□□□□□ -1.18
VPS13A-213ENST00000539950 RTN1Q16799 776 aa7.71□□□□□ -1.18
VPS13A-213ENST00000539950 BCS1LQ9Y276 419 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms